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Topic Review
S-Glutathionylation and S-Nitrosylation in Mitochondria: Homeostasis and Neurodegeneration
Redox post-translational modifications are derived from fluctuations in the redox potential and modulate protein function, localization, activity and structure. Amongst the oxidative reversible modifications, the S-glutathionylation of proteins was the first to be characterized as a post-translational modification, which primarily protects proteins from irreversible oxidation. S-nitrosylation, another post-translational modification, was identified in the past, but it was re-introduced as a prototype cell-signaling mechanism, one that tightly regulates core processes within the cell’s sub-compartments, especially in mitochondria. S-glutathionylation and S-nitrosylation are modulated by fluctuations in reactive oxygen and nitrogen species and, in turn, orchestrate mitochondrial bioenergetics machinery, morphology, nutrients metabolism and apoptosis.
  • 1.2K
  • 26 Dec 2022
Topic Review
Molecular Diagnosis of COVID-19
COVID-19 is no longer a global pandemic due to development and integration of different technologies for the diagnosis and treatment of the disease, technological advancement in the field of molecular biology, electronics, computer science, artificial intelligence, Internet of Things, nanotechnology, etc. has led to the development of molecular approaches and computer aided diagnosis for the detection of COVID-19. 
  • 1.2K
  • 11 Jan 2023
Topic Review
Obesity and Lipids
Recently, lipidomics has become an important branch of medical/clinical sciences similar to proteomics and genomics. Due to the much higher lipid accumulation in obese patients and many alterations in the compositions of various groups of lipids, the methods used for sample preparations for lipidomic studies of samples from obese subjects sometimes have to be modified. Appropriate sample preparation methods allow for the identification of a wide range of analytes by advanced analytical methods, including mass spectrometry. This is especially the case in studies with obese subjects, as the amounts of some lipids are much higher, others are present in trace amounts, and obese subjects have some specific alterations of the lipid profile. 
  • 1.2K
  • 01 Dec 2020
Topic Review
Core Collections of Plant Genetic Resources
The core collection is a small subset that minimizes genetic redundancy while preserving the maximum genetic diversity of the entire population. Research on the core collection is crucial for the efficient management and utilization of germplasm resources.
  • 1.2K
  • 11 May 2023
Topic Review
The Main Protease of SARS-CoV-2 and its inhibitors
Mpro, also known as 3-chymotrypsin-like protease (3CLpro), is a 33.8 kDa, three-domain cysteine protease, essential for proteolytic maturation and viral replication of coronaviruses. This enzyme is an excellent target for a potential drug, as it is essential for viral replication and has no closely related homologues in humans, making its inhibitors unlikely to be toxic. 
  • 1.2K
  • 08 Aug 2022
Topic Review
Selenium and Ageing
Selenium (Se) is an essential dietary trace element that plays an important role in the prevention of inflammation, cardiovascular diseases, infections, and cancer. Selenoproteins contain selenocysteine in the active center and include, i.a., the enzymes thioredoxin reductases (TXNRD1–3), glutathione peroxidases (GPX1–4 and GPX6) and methionine sulfoxide reductase, involved in immune functions, metabolic homeostasis, and antioxidant defense. Ageing is an inevitable process, which, i.a., involves an imbalance between antioxidative defense and reactive oxygen species (ROS), changes in protein and mitochondrial renewal, telomere attrition, cellular senescence, epigenetic alterations, and stem cell exhaustion. These conditions are associated with mild to moderate inflammation, which always accompanies the process of ageing and age-related diseases. In older individuals, Se, by being a component in protective enzymes, operates by decreasing ROS-mediated inflammation, removing misfolded proteins, decreasing DNA damage, and promoting telomere length. Se-dependent GPX1–4 and TXNRD1–3 directly suppress oxidative stress. Selenoprotein H in the cell nucleus protects DNA, and selenoproteins residing in the endoplasmic reticulum (ER) assist in the removal of misfolded proteins and protection against ER stress.
  • 1.2K
  • 11 Nov 2021
Topic Review
Genome Editing Technologies
Genome editing is the technique of precise genome modifications that facilitate the targeted modifications within the genome through the deletions, insertions, or substitution of single base or specific sequences.
  • 1.2K
  • 08 Mar 2022
Topic Review
Oxytocin-System
Oxytocin (OXT) is  hypothalamic neuropeptide synthetized in the brain by magnocellular and parvo cellular neurons of the paraventricular, supraoptic and accessory nuclei of the hypothalamus. OXT acts in central and peripheral nervous system via G-protein-coupled receptors. The classical physiological functions of OXT are uterine contractions, the milk ejection reflex during lactation, penile erection and sexual arousal, but recent studies have demonstrated that OXT may has anti-inflammatory and anti-oxidant properties and regulates the immune and anti-inflammatory responses. In the pathogenesis of various neurodegenerative diseases, microglia are present in active form and release high levels of pro-inflammatory cytokines and chemokines,  that are implicated in the process of neural injury.  A promising treatment for neurodegenerative diseases involves new therapeutic approaches targeting activated microglia. Recent studies have reported that OXT exerts neuroprotective effects through inhibition of production of pro-inflammatory mediators, and in development of correct neural circuitry. The focus of this review is to attribute a new important role of OXT in neuroprotection through microglia-OXT interaction of immature and adult brain. In  addition, we also analyzed the strategies that could enhance its delivery in the brain to amplificated its positive effects .  
  • 1.2K
  • 28 Sep 2021
Topic Review
GPCR Reconstitution and Labeling for Solution NMR
G protein-coupled receptors (GPCRs) are a large membrane protein family found in higher organisms, including the human body. GPCRs mediate cellular responses to diverse extracellular stimuli and thus control key physiological functions, which makes them important targets for drug design. Signaling by GPCRs is related to the structure and dynamics of these proteins, which are modulated by extrinsic ligands as well as by intracellular binding partners such as G proteins and arrestins. 
  • 1.2K
  • 19 Jul 2022
Topic Review
PROteolysis TArgeting Chimeras-Based Antiviral Strategies
The PROteolysis TArgeting Chimeras (PROTAC), a technology for targeted protein degradation, relies on using heterobifunctional molecules to recruit intracellular protein degradation machinery to the intracellular target protein of interest. This chemically-induced proximity between protein degradation machinery and the target POI results in polyubiquitylation and proteasomal degradation of the target protein. Despite the field of PROTAC technology being relatively new, PROTACs have found wide applications not just as a technical tool but also as a therapeutic approach for infectious and non-infectious diseases, including cancer and neurodegenerative diseases.
  • 1.2K
  • 10 May 2023
Topic Review
Glyoxalase 2
Glyoxalase 2 is a mitochondrial and cytoplasmic protein belonging to the metallo-β-lactamase family encoded by the hydroxyacylglutathione hydrolase (HAGH) gene. This enzyme is the second enzyme of the glyoxalase system that is responsible for detoxification of the α-ketothaldehyde methylglyoxal in cells. The two enzymes glyoxalase 1 (Glo1) and glyoxalase 2 (Glo2) form the complete glyoxalase pathway, which utilizes glutathione as cofactor in eukaryotic cells.
  • 1.2K
  • 14 Nov 2022
Topic Review
5-10-Methylenetetrahydrofolate Reductase
The 5-10-methylenetetrahydrofolate reductase (MTHFR) enzyme is vital for cellular homeostasis due to its key functions in the one-carbon cycle, which include methionine and folate metabolism, and protein, DNA, and RNA synthesis. 
  • 1.2K
  • 14 Feb 2022
Topic Review
Antibiofilm Therapeutics Strategies to Overcome Antimicrobial Drug Resistance
Biofilms embrace the capability to resist and survive harsh environmental conditions and defeat the host immune system, so there is a desire for exploring new antibiofilm agents. Antibiofilm agents that can abet the process of dismantling the biofilm has provided research strategies for designing new biofilm dispersal inducers.
  • 1.2K
  • 10 Mar 2022
Topic Review
Plant Kunitz Inhibitors and Their Interaction with Proteases
Plant Kunitz inhibitors generally exhibit highly conserved primary structures. These inhibitors usually have a reactive site located in the region that binds to the enzyme, and the formation of the enzyme–inhibitor complex occurs in 1:1 stoichiometry. Their reactive sites are frequently composed of Arg and Lys; they may occasionally contain Glu, Ala, or Val.
  • 1.2K
  • 13 May 2022
Topic Review
Long Non-Coding RNAs in Cardiovascular Diseases
Cardiovascular diseases (CVDs) are the leading cause of death worldwide. It is estimated that approximately 18.5 million people die annually on account of these diseases, with a third of these people dying under the age of 70 years. Identifying those most affected by CVDs and ensuring they receive the appropriate treatment can prevent premature deaths. Furthermore, the development of new therapeutic strategies and biomarkers with the potential to predict the progression of CVDs is fundamental to reducing mortality worldwide. CVDs can be defined as disorders that affect the heart or blood vessels such as heart failure, coronary heart disease, cerebrovascular disease, peripheral arterial disease, and congenital heart disease.
  • 1.2K
  • 30 Oct 2021
Topic Review
S-adenosyl-l-homocysteine Hydrolase
S-adenosyl-l-homocysteine hydrolase (SAHase) is a major regulator of cellular methylation reactions that occur in eukaryotic and prokaryotic organisms. SAHase activity is also a significant source of l-homocysteine and adenosine, two compounds involved in numerous vital, as well as pathological processes. Therefore, apart from cellular methylation, the enzyme may also influence other processes important for the physiology of particular organisms.
  • 1.2K
  • 17 Feb 2021
Topic Review
Tyrosyl-DNA Phosphodiesterase 1
Tyrosyl-DNA phosphodiesterase 1 (TDP1) is an important repair enzyme that removes various covalent adducts from the 3′ end of DNA. Particularly, covalent complexes of topoisomerase 1 (TOP1) with DNA stabilized by DNA damage or by various chemical agents are an examples of such adducts. 
  • 1.2K
  • 27 Mar 2023
Topic Review
Peroxiredoxin
Peroxiredoxin (Prx) is a relatively recently discovered antioxidant enzyme family that scavenges peroxides and is known to be present in organisms from biological taxa ranging from bacteria to multicellular eukaryotes, including photosynthetic organisms.
  • 1.2K
  • 24 Mar 2021
Topic Review
Cholinesterase Modeling and Simulation
The cholinesterase enzyme family has but two members: acetylcholinesterase (AChE) and butyrylcholinesterase (BChE).  Computational efforts to better understand these enzymes, with a focus on their structural and catalytic properties and dynamics, includes docking and other Monte Carlo based calculations, as well as dynamic simulations of varying rigor and resource-demand including molecular dynamics, Langevin dynamics, quantum mechanical/molecular mechanics, and related algorithms. 
  • 1.2K
  • 21 Apr 2021
Topic Review
Antibody-Based Immunotherapy for Metastatic Melanoma
Melanoma is the least common form of skin cancer and is associated with the highest mortality. Where melanoma is mostly unresponsive to conventional therapies (e.g., chemotherapy), BRAF inhibitor treatment has shown improved therapeutic outcomes. Photodynamic therapy (PDT) relies on a light-activated compound to produce death-inducing amounts of reactive oxygen species (ROS). Their capacity to selectively accumulate in tumor cells has been confirmed in melanoma treatment with some encouraging results. However, this treatment approach has not reached clinical fruition for melanoma due to major limitations associated with the development of resistance and subsequent side effects. These adverse effects might be bypassed by immunotherapy in the form of antibody–drug conjugates (ADCs) relying on the ability of monoclonal antibodies (mAbs) to target specific tumor-associated antigens (TAAs) and to be used as carriers to specifically deliver cytotoxic warheads into corresponding tumor cells. Of late, the continued refinement of ADC therapeutic efficacy has given rise to photoimmunotherapy (PIT) (a light-sensitive compound conjugated to mAbs), which by virtue of requiring light activation only exerts its toxic effect on light-irradiated cells.
  • 1.2K
  • 26 Oct 2020
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