Encyclopedia of Fungi

Recent Advances in Research on Molecular Mechanisms of Fungal Signaling

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Sri Bühring

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Encyclopedia 2022, 2(2), 840-863; https://doi.org/10.3390/encyclopedia2020055

Biochemical signaling is one of the key mechanisms to coordinate a living organism in all aspects of its life. It is still enigmatic how exactly cells and organisms deal with environmental signals and irritations precisely because of the limited number of signaling prot [...] Read more

Biochemical signaling is one of the key mechanisms to coordinate a living organism in all aspects of its life. It is still enigmatic how exactly cells and organisms deal with environmental signals and irritations precisely because of the limited number of signaling proteins and a multitude of transitions inside and outside the cell. Many components of signaling pathways are functionally pleiotropic, which means they have several functions. A single stimulus often results in multiple responses, a distinct response can be triggered by numerous stimuli and signals initiated by different stimuli are often transduced via commonly used network components. This review sheds light on the most important molecular mechanisms of cellular signaling in fungi and consequently provides a comprehensive overview about the current state of research on the road to understand the impact of signal transduction in eukaryotic microorganisms.

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Effects of High Hydrostatic Pressure on Fungal Spores and Plant Bioactive Compounds

By

Carlos Alberto Cruz Pinto

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Mária Holovičová

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Marta Habanova

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Vasco Lima

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Ricardo Valente Duarte

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Francisco J. Barba

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Jorge Manuel Alexandre Saraiva

Encyclopedia 2022, 2(3), 1453-1463; https://doi.org/10.3390/encyclopedia2030098

Fungi, and their spores, are responsible for the spoilage of several foods and plants and are susceptible to contamination with mycotoxins, which have associated health hazards. In this context, proper methodologies for inactivating such fungi and controlling mycotoxin [...] Read more

Fungi, and their spores, are responsible for the spoilage of several foods and plants and are susceptible to contamination with mycotoxins, which have associated health hazards. In this context, proper methodologies for inactivating such fungi and controlling mycotoxin production are critical. High-pressure processing (HPP) has recently become popular as a nonthermal alternative to conventional thermal pasteurization processes. Even though HPP can effectively eliminate some fungal spores, some species, such as those from the genera Byssochlamys, Talaromyces, and Aspergillus, are quite resistant to this treatment. Additionally, high pressure can also be used as a cold extraction technique for bioactive compounds from medicinal plants and other matrices (termed high pressure-assisted extraction, HPE). With this method, safe use for food, cosmetic, and pharmaceutical applications is guaranteed. This method simultaneously works (depending on the applied pressure level) as an extraction technique and induces the pasteurization effect on the extracts. This encyclopedia entry aims to highlight the effects of nonthermal HPP on fungal spores, the prevalence of mycotoxins in plant materials and how high pressure can be used as an extraction technique to produce high-value cold pasteurized extracts with biological activity.

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Antifungals and Drug Resistance

By

Chowdhury Mobaswar Hossain

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Lisa Kathleen Ryan

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Meeta Gera

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Sabyasachi Choudhuri

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Nazmun Lyle

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Kazi Asraf Ali

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Gill Diamond

Encyclopedia 2022, 2(4), 1722-1737; https://doi.org/10.3390/encyclopedia2040118

Antifungal drugs prevent topical or invasive fungal infections (mycoses) either by stopping growth of fungi (termed fungistatic) or by killing the fungal cells (termed fungicidal). Antibiotics also prevent bacterial infections through either bacteriostatic or bactericid [...] Read more

Antifungal drugs prevent topical or invasive fungal infections (mycoses) either by stopping growth of fungi (termed fungistatic) or by killing the fungal cells (termed fungicidal). Antibiotics also prevent bacterial infections through either bacteriostatic or bactericidal mechanisms. These microorganisms successfully develop resistance against conventional drugs that are designed to kill or stop them from multiplying. When a fungus no longer responds to antifungal drug treatments and continues to grow, this is known as antifungal drug resistance. Bacteria have an amazing capacity to become resistant to antibiotic action as well, and the effectiveness of the scarce antifungal arsenal is jeopardised by this antibiotic resistance, which poses a severe threat to public health.

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Saccharomyces cerevisiae: Multifaceted Applications in One Health and the Achievement of Sustainable Development Goals

By

Nathalie Ballet

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Sarah Renaud

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Hugo Roume

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Fanny George

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Pascal Vandekerckove

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Mickaël Boyer

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Mickaël Durand-Dubief

Encyclopedia 2023, 3(2), 602-613; https://doi.org/10.3390/encyclopedia3020043

Saccharomyces cerevisiae (SC), a yeast with an extensive history in food and beverage fermentations, is increasingly acknowledged for its multifaceted application in promoting and benefiting all aspects of a ‘One Health’ approach, including the prevention and control of [...] Read more

Saccharomyces cerevisiae (SC), a yeast with an extensive history in food and beverage fermentations, is increasingly acknowledged for its multifaceted application in promoting and benefiting all aspects of a ‘One Health’ approach, including the prevention and control of zoonoses. For instance, SC contributes to environmentally sustainable agricultural practices through the reduced use of toxic agents, thus minimizing air and soil pollution while enhancing crop quality. Additionally, this versatile yeast can improve the health of domestic and farm animals, leading to more efficient and sustainable food production, while fostering synergistic impacts across environmental, animal, and human health spheres. Moreover, SC directly applies benefits to human health by promoting improved nutrition, improving gut health through probiotics, as an alternative to antibiotics, and treating gastric disorders. By aligning with several Sustainable Development Goals (SDGs), SC is vital in advancing global health and well-being, environmental sustainability, and responsible consumption and production. This entry illustrates the numerous benefits of SC and highlights its significant impact on a global ‘One Health’ scale, promoting the achievement of SDGs through its unique characteristics and deeper understanding of its contribution to the One Health concept.

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Chytrids in Soil Environments: Unique Adaptations and Distributions

By

Deirdre G. Hanrahan-Tan

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Osu Lilje

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Linda Henderson

Encyclopedia 2023, 3(2), 642-664; https://doi.org/10.3390/encyclopedia3020046

Chytridiomycota (zoosporic true fungi) have a consistent presence in soils and have been frequently identified within many diverse terrestrial environments. However, Chytridiomycota and other early-diverging fungi have low representation in whole-genome sequencing datab [...] Read more

Chytridiomycota (zoosporic true fungi) have a consistent presence in soils and have been frequently identified within many diverse terrestrial environments. However, Chytridiomycota and other early-diverging fungi have low representation in whole-genome sequencing databases compared to Dikarya. New molecular techniques have provided insights into the diversity and abundance of chytrids in soils and the changes in their populations both spatially and temporally. Chytrids complete their life cycle within rapidly changing soil environments where they may be more common within micropores due to protection from predation, desiccation, and extreme temperatures. Reproductive and morphological changes occur in response to environmental changes including pH, fluctuating nutrient concentrations, and metals at levels above toxic thresholds. Rhizoids share some features of hyphae, including the spatial regulation of branching and the ability to attach, adapt to, and proliferate in different substrates, albeit on a microscale. Soil chytrids provide a pool of novel enzymes and proteins which enable a range of lifestyles as saprotrophs or parasites, but also can be utilised as alternative tools with some biotechnological applications. Thus, 3D live-cell imaging and micromodels such as MicroCT may provide insight into zoospore functions and rhizoid plasticity, respectively, in response to various conditions. A combination of classical techniques of soil chytrid baiting with simultaneous molecular and ecological data will provide insights into temporal population changes in response to environmental change. The authors emphasise the need to review and improve DNA-based methodologies for identifying and quantifying chytrids within the soil microbiome to expand our knowledge of their taxonomy, abundance, diversity, and functionality within soil environments.

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Amanita muscaria: Ecology, Chemistry, Myths

By

Quentin Carboué

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Michel Lopez

Encyclopedia 2021, 1(3), 905-914; https://doi.org/10.3390/encyclopedia1030069

Amanita muscaria is the most emblematic mushroom in the popular representation. It is an ectomycorrhizal fungus endemic to the cold ecosystems of the northern hemisphere. The basidiocarp contains isoxazoles compounds that have specific actions on the central nervous sys [...] Read more

Amanita muscaria is the most emblematic mushroom in the popular representation. It is an ectomycorrhizal fungus endemic to the cold ecosystems of the northern hemisphere. The basidiocarp contains isoxazoles compounds that have specific actions on the central nervous system, including hallucinations. For this reason, it is considered an important entheogenic mushroom in different cultures whose remnants are still visible in some modern-day European traditions. In Siberian civilizations, it has been consumed for religious and recreational purposes for millennia, as it was the only inebriant in this region.

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Arbuscular Mycorrhizal Fungi in Agriculture

By

Thomas Wilkes

Encyclopedia 2021, 1(4), 1132-1154; https://doi.org/10.3390/encyclopedia1040085

Arbuscular mycorrhizal (AM) fungi are biotrophic symbionts forming close relationships with an estimated 80% of terrestrial plants suitable as their host. Via an established AM fungal–host relationship, soil-bound nutrients are made available to the host plant through r [...] Read more

Arbuscular mycorrhizal (AM) fungi are biotrophic symbionts forming close relationships with an estimated 80% of terrestrial plants suitable as their host. Via an established AM fungal–host relationship, soil-bound nutrients are made available to the host plant through root cortical arbuscules as the site of exchange. At these sites, photosynthetic carbohydrates are provided to the AM fungus—carbohydrates that cannot be produced by the fungus. AM fungal–host symbiosis is very sensitive to soil disturbance, for example, agricultural tillage practices can damage and reduce AM fungal abilities to interact with a host and provide plant growth-promoting properties.

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Main Carotenoids Produced by Microorganisms

By

Carlos Barreiro

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Sonia Martinez

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Jose Luis Barredo

Encyclopedia 2021, 1(4), 1223-1245; https://doi.org/10.3390/encyclopedia1040093

Carotenoids are the pigments present in plants, animals, and microorganisms which are responsible for a broad variety of colors found in nature. Their capacity as antioxidants mainly established their marketable success as health, food, and feed supplements, and cosmeti [...] Read more

Carotenoids are the pigments present in plants, animals, and microorganisms which are responsible for a broad variety of colors found in nature. Their capacity as antioxidants mainly established their marketable success as health, food, and feed supplements, and cosmetics components. Currently, chemical synthesis dominates the worldwide market; however, due to the high biological value of natural carotenoids, the production scheme is moving towards microbial production as a profitable alternative.

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Marine Fungi: Opportunities and Challenges

By

Micael Gonçalves

Encyclopedia 2022, 2(1), 559-577; https://doi.org/10.3390/encyclopedia2010037

Marine fungi play a crucial role in energy flow and nutrient recycling, mediating the cycling of dissolved organic matter in marine environments. However, despite being a prolific group of organisms, marine fungi have been largely neglected for a long time. Besides thei [...] Read more

Marine fungi play a crucial role in energy flow and nutrient recycling, mediating the cycling of dissolved organic matter in marine environments. However, despite being a prolific group of organisms, marine fungi have been largely neglected for a long time. Besides their importance in the marine food web, marine fungi represent an active source of natural products. Over the last years, researchers have focused on studying marine organisms to discover new metabolites with antibacterial, antiviral, and anticancer activities. Moreover, with the advances in high-throughput sequencing technologies and mass spectrometry techniques, genomic and metabolomic approaches have revealed to be of paramount importance in natural products discovery. The marine mycobiome includes many organisms still to be identified, and the ones already known are still underutilized in biotechnological applications. For this reason, it is undeniable that exploring the marine mycobiome including new habitats and substrates, even those of remote access, is fundamental for describing the true magnitude of the Earth’s mycobiome.

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The Potential for Cellulose Deconstruction in Fungal Genomes

By

Renaud Berlemont

Encyclopedia 2022, 2(2), 990-1003; https://doi.org/10.3390/encyclopedia2020065

Fungal cellulolytic enzymes are carbohydrate active enzymes (CAzymes) essential for the deconstruction of the plant cell wall. Cellulolytic activity is described in some glycoside hydrolases (GH-cellulases) and in auxiliary activities (AA-cellulases) families. Across en [...] Read more

Fungal cellulolytic enzymes are carbohydrate active enzymes (CAzymes) essential for the deconstruction of the plant cell wall. Cellulolytic activity is described in some glycoside hydrolases (GH-cellulases) and in auxiliary activities (AA-cellulases) families. Across environments, these enzymes are mostly produced by some fungi and some bacteria. Cellulolytic fungi secrete these enzymes to deconstruct polysaccharides into simple and easy to metabolize oligo- and mono-saccharides. The fungal ability to degrade cellulose result from their repertoire of CAZymes-encoding genes targeting many substrates (e.g., xylan, arabinose). Over the past decade, the increased number of sequenced fungal genomes allowed the sequence-based identification of many new CAZyme-encoding genes. Together, the predicted cellulolytic enzymes constitute the fungal potential for cellulose deconstruction. As not all fungi have the same genetic makeup, identifying the potential for cellulose deconstruction across different lineages can help identify the various fungal strategies to access and degrade cellulose (conserved vs. variable genomic features) and highlight the evolution of cellulase-encoding genes. Here, the potential for cellulose deconstruction identified across publicly accessible, and published, fungal genomes is discussed.

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Mucormycosis—Emerging Fungal Threats

By

Gianmarco Troiano

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NICOLA NANTE

Encyclopedia 2022, 2(1), 247-255; https://doi.org/10.3390/encyclopedia2010016

Mucormycosis is an opportunistic fungal infection due to organisms of the Zygomycetes class and the order of Mucorales that can cause various types of infections. In recent years, an increasing phenomenon has been observed—invasive fungal infections especially in the he [...] Read more

Mucormycosis is an opportunistic fungal infection due to organisms of the Zygomycetes class and the order of Mucorales that can cause various types of infections. In recent years, an increasing phenomenon has been observed—invasive fungal infections especially in the healthcare setting. Among immucompromised patients, an important clinical emergency could be represented by mucormycosis. The epidemiology of mucormycosis has shown an alarming trend and its incidence is rising globally. Four elements are fundamental for a successful treatment: rapid diagnosis, reduction of predisposing factors (if possible), surgical debridement of infected tissues, and appropriate antifungal therapy.

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Black Fungi Research: Out-of-This-World Implications

By

Donatella Tesei

Encyclopedia 2022, 2(1), 212-229; https://doi.org/10.3390/encyclopedia2010013

Black fungi are an ecological group of melanized fungi specialized in extremotolerance and assumed to be among the most stress-resistant eukaryotes on Earth. Multi-omics studies have provided significant evidence that they have a peculiar response to stress that differs [...] Read more

Black fungi are an ecological group of melanized fungi specialized in extremotolerance and assumed to be among the most stress-resistant eukaryotes on Earth. Multi-omics studies have provided significant evidence that they have a peculiar response to stress that differs considerably from that of common mesophilic hyphomycetes. Survival strategies displayed by these organisms have situated them as attractive models for astrobiology and, in general, for studies directed towards the definition of the actual limits for life. Moreover, the ascertained aptitude of black fungi for degradation of hazardous volatile pollutants and for plastic breakdown suggests prospective application of several species.

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Fungal Metabolites in Human Health and Diseases—An Overview

By

Manal Esheli

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Bathini Thissera

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Hesham R. El-Seedi

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Mostafa E. Rateb

Encyclopedia 2022, 2(3), 1590-1601; https://doi.org/10.3390/encyclopedia2030108

Fungi produce a wide range of secondary metabolites. Some of these metabolites are toxic to humans and cause various health disorders, ranging from acute poisoning to chronic diseases. Contrary to this, some fungal metabolites are valuable sources in therapeutics, such [...] Read more

Fungi produce a wide range of secondary metabolites. Some of these metabolites are toxic to humans and cause various health disorders, ranging from acute poisoning to chronic diseases. Contrary to this, some fungal metabolites are valuable sources in therapeutics, such as penicillin. Herein, researchers briefly highlight the role played by different fungal metabolites in human health and diseases and give an overview of the most common fungal genera.

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Challenges in Ramularia collo-cygni Control

By

Andres Mäe

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Riinu Kiiker

Encyclopedia 2022, 2(1), 256-263; https://doi.org/10.3390/encyclopedia2010017

Ramularia leaf spot (RLS), caused by the fungus Ramularia collo-cygni, has recently become widespread in Europe. Succinate dehydrogenase inhibitor (SDHI) and demethylation inhibitor (DMI) fungicides are mainly applied for disease control on barley fields, but pathogen i [...] Read more

Ramularia leaf spot (RLS), caused by the fungus Ramularia collo-cygni, has recently become widespread in Europe. Succinate dehydrogenase inhibitor (SDHI) and demethylation inhibitor (DMI) fungicides are mainly applied for disease control on barley fields, but pathogen isolates with a reduced sensitivity can cause difficulties. There is an urgent need for new spring barley cultivars that are more resistant to RLS development and can inhibit R. collo-cygni epidemics.

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Cultures of Spalting

By

Seri C. Robinson

Encyclopedia 2022, 2(3), 1395-1407; https://doi.org/10.3390/encyclopedia2030094

Wood decayed and colored by fungi, colloquially known as ‘spalted wood’, has been a source of art and folklore across numerous cultures. From intarsia and marquetry in Italy and Germany to woodturning in the U.S. and carving and mythology in Chile, the uses of, and stor [...] Read more

Wood decayed and colored by fungi, colloquially known as ‘spalted wood’, has been a source of art and folklore across numerous cultures. From intarsia and marquetry in Italy and Germany to woodturning in the U.S. and carving and mythology in Chile, the uses of, and stories about, spalted wood are explored, as well as how those have shaped their surrounding cultures as well as modern science.

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Fungal Secondary Metabolism

By

Javier Avalos

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M Carmen Limon

Encyclopedia 2022, 2(1), 1-13; https://doi.org/10.3390/encyclopedia2010001

Fungal secondary metabolites (SMs) comprise a vast collection of compounds expendable for these organisms under laboratory conditions. They exhibit enormous chemical diversity, and usually belong to four major families: terpenoids, polyketides, non-ribosomal peptides, o [...] Read more

Fungal secondary metabolites (SMs) comprise a vast collection of compounds expendable for these organisms under laboratory conditions. They exhibit enormous chemical diversity, and usually belong to four major families: terpenoids, polyketides, non-ribosomal peptides, or a combination of the last two. Their functions are very diverse and are normally associated with a greater fitness of the producing fungi in their environment, which often compete with other microorganisms or interact with host plants. Many SMs have beneficial applications, e.g., as antibiotics or medical drugs, but others, known as mycotoxins, are harmful to health.

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Saprophytic Filamentous Fungi against Helminths Affecting Captive Wild Animals

By

Rami Salmo

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Cándido Viña

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João Lozano

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Antonio M. Palomero

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José Ángel Hernández

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Rodrigo Bonilla

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Rita Sánchez-Andrade

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Adolfo Paz-Silva

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Luis M. Madeira de Carvalho

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María Sol Arias

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Cristiana Cazapal-Monteiro

Encyclopedia 2024, 4(1), 91-100; https://doi.org/10.3390/encyclopedia4010008

In recent decades, important modifications have been introduced in zoos in order to guarantee the welfare of captive wild animals. Thus, many of these species are housed in enclosures with access to vegetation, where they can enjoy habitats close to those in their natur [...] Read more

In recent decades, important modifications have been introduced in zoos in order to guarantee the welfare of captive wild animals. Thus, many of these species are housed in enclosures with access to vegetation, where they can enjoy habitats close to those in their natural surroundings, interact with the environment, etc. These habitats present beneficial conditions for some species of parasites to survive and spread. This is a very similar problem to that affecting livestock, and the same solution, based on deworming, is currently being applied. However, the free-living stages of certain parasites that develop in the soil are responsible for high rates of ground contamination throughout the year, so that animals become infected soon after successful deworming, resulting in chemical parasiticides being frequently administered. Preventive measures are seldom considered, which worsens the situation. This entry summarizes the usefulness of the dissemination of certain saprophytic filamentous fungi with proven antagonism against some of the parasites.

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Lichen as Multipartner Symbiotic Relationships

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Encyclopedia 2022, 2(3), 1421-1431; https://doi.org/10.3390/encyclopedia2030096

Lichens have long been considered as composite organisms composed of algae and/or cyanobacteria hosted by a fungus in a mutualistic relationship. Other organisms have been gradually discovered within the lichen thalli, such as multiple algal species, yeasts, or even vir [...] Read more

Lichens have long been considered as composite organisms composed of algae and/or cyanobacteria hosted by a fungus in a mutualistic relationship. Other organisms have been gradually discovered within the lichen thalli, such as multiple algal species, yeasts, or even viruses. Of pivotal relevance is the existence of the lichen microbiome, which is a community of microorganisms that can be found living together on the lichen surface. This community performs a growing number of functions. In this entry, we explore the journey of lichens being considered from a dual partnership to a multi-species symbiotic relationship.

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Fungi in a One Health Perspective

By

Daniela Simões

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Eugénia de Andrade

,

Raquel Sabino

Encyclopedia 2023, 3(3), 900-918; https://doi.org/10.3390/encyclopedia3030064

Fungi constitute a diverse group with highly positive and negative impacts in different environments, having several natural roles and beneficial applications in human life, but also causing several concerns. Fungi can affect human health directly, but also indirectly b [...] Read more

Fungi constitute a diverse group with highly positive and negative impacts in different environments, having several natural roles and beneficial applications in human life, but also causing several concerns. Fungi can affect human health directly, but also indirectly by being detrimental for animal and plant health, influencing food safety and security. Climate changes are also affecting fungal distribution, prevalence, and their impact on different settings. Searching for sustainable solutions to deal with these issues is challenging due to the complex interactions among fungi and agricultural and forestry plants, animal production, environment, and human and animal health. In this way, the “One Health” approach may be useful to obtain some answers since it recognizes that human health is closely connected to animal and plant health, as well as to the shared environment. This review aims to explore and correlate each of those factors influencing human health in this “One Health” perspective. Thus, the impact of fungi on plants, human, and animal health, and the role of the environment as an influencing factor on these elements are discussed.

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Asexual Epichloë Fungi—Obligate Mutualists

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Encyclopedia 2021, 1(4), 1084-1100; https://doi.org/10.3390/encyclopedia1040083

Asexual Epichloë are obligate fungal mutualists that form symbiosis with many temperate grass species, providing several advantages to the host. These advantages include protection against vertebrate and invertebrate herbivores (i.e., grazing livestock and invertebrate [...] Read more

Asexual Epichloë are obligate fungal mutualists that form symbiosis with many temperate grass species, providing several advantages to the host. These advantages include protection against vertebrate and invertebrate herbivores (i.e., grazing livestock and invertebrate pests, respectively), improved resistance to phytopathogens, increased adaptation to drought stress, nutrient deficiency, and heavy metal-containing soils. Selected Epichloë strains are utilised in agriculture mainly for their pest resistance traits, which are moderated via the production of Epichloë-derived secondary metabolites. For pastoral agriculture, the use of these endophyte infected grasses requires the balancing of protection against insect pests with reduced impacts on animal health and welfare.

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The Mysteries of the White Truffle: Its Biology, Ecology and Cultivation

By

Simone Graziosi

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Ian Robert Hall

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Alessandra Zambonelli

Encyclopedia 2022, 2(4), 1959-1971; https://doi.org/10.3390/encyclopedia2040135

Tuber magnatum Picco is the most expensive of the truffles and a great deal of research has been carried out in an attempt to solve the mysteries of its ecology and biology. However, considerable work remains to be done particularly on those secrets of its life cycle th [...] Read more

Tuber magnatum Picco is the most expensive of the truffles and a great deal of research has been carried out in an attempt to solve the mysteries of its ecology and biology. However, considerable work remains to be done particularly on those secrets of its life cycle that remain a mystery. It is known that T. magnatum is heterothallic, but it has yet to be determined how fertilization occurs between the two strains of different mating types. It is also known that the white truffle is an ectomycorrhizal fungus, and its mycorrhizas can be produced in greenhouses, but then they seem to disappear in the field. The role of other soil microorganisms, fungi and bacteria, on its soil mycelial development and fructification is intriguing but is far from being completely understood. All these uncertainties have made the cultivation of T. magnatum extremely difficult and only recently have we had the scientific proofs that it is possible. Even so, many questions remain unanswered and the management practices of T. magnatum plantations are still to be better defined to also enable the taming of this truffle.

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Published Entries

Planned Entries

Institution: Multidisciplinary Institute for Environmental Studies/Department of Marine Sciences and Applied Biology, University of Alicante, Apdo. 99, E-03080 Alicante, Spain

Interests: biocontrol; nematophagous fungi; entomopathogenic fungi; chitosan; plant pathology; endophytes; fungal "omics"

Institution: Multidisciplinary Institute for Environmental Studies/Department of Marine Sciences and Applied Biology, University of Alicante, Apdo. 99, E-03080 Alicante, Spain

Interests: biocontrol; nematophagous fungi; entomopathogenic fungi; chitosan; plant pathology; endophytes; fungal "omics"

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