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Topic Review
Trends of Target-Integrins for Fibrosis
Liver fibrosis is an intractable disease with high morbidity by advancing into liver cirrhosis that often causes organ failure, where the parenchymal cells are replaced with collagen species and other matrix proteins. Integrins are receptors for matrix proteins that essentially consist of fibrosis tissues, and some integrins activate latent-TGFβ a central driver of fibrosis.
  • 995
  • 03 Dec 2021
Topic Review
Cytotoxic Alkaloids from Marine Sponges
Marine sponges (porifera) have proved to be a prolific source of unique bioactive secondary metabolites, among which the alkaloids occupy a special place in terms of unprecedented structures and outstanding biological activities. Identification of active cytotoxic alkaloids extracted from marine animals, particularly sponges, is an important strive, due to lack of knowledge on traditional experiential and ethnopharmacology investigations. In this report, a comprehensive survey of demospongian bioactive alkaloids in the range 1987–2020 had been performed with a special emphasis on the potent cytotoxic activity. Different resources and databases had been investigated, including Scifinder (database for the chemical literature) CAS (Chemical Abstract Service) search, web of science, Marin Lit (marine natural products research) database. More than 230 representatives of different classes of alkaloids had been reviewed and classified, different genera belonging to the phylum porifera had been shown to be a prolific source of alkaloidal molecules, including Agelas sp., Suberea sp., Mycale sp., Haliclona sp., Epipolasis sp., Monanchora sp., Crambe sp., Reniera sp., and Xestospongia sp., among others. The sufficient production of alkaloids derived from sponges is a prosperous approach that requires more attention in future studies to consider the constraints regarding the supply of drugs, attained from marine organisms.
  • 994
  • 04 Mar 2021
Topic Review
Non-Alkaloid Cholinesterase Inhibitory Compounds
The classes of cholinesterase inhibitors discussed here are mainly terpenoids, phenolic compounds, and coumarins, and some of these compounds have shown high potency. In order to consider which classes are most suitable, based on the benefits and drawbacks, certain structural features of each class will be of great importance. Using chalcones as an example, it is believed that besides economical and cost-effective production, small molecular size and flexibility for modifications to improve lipophilicity necessary for blood-brain barrier permeability are important to consider for a preferred potential therapeutic candidate for AD.
  • 994
  • 29 Sep 2021
Topic Review
Metabolomics in Atopic Eczema
Atopic eczema (AE) is an inflammatory skin disorder affecting approximately 20% of children worldwide and early onset can lead to asthma and allergies. Metabolomics, the analysis of small molecules in the skin produced by the host and microbes, opens a window to observe the mechanisms of the disease which then may lead to new drug targets for AE treatment. 
  • 994
  • 27 Sep 2022
Topic Review
Dystrophin Node
Dystrophin isoform Dp427-M is tightly associated with a variety of glycoproteins at the muscle sarcolemma membrane. The core dystrophin-glycoprotein complex forms a variety of links to components of the extracellular matrix and the intracellular cytoskeleton. The wider dystrophin complexome plays a crucial functional role as an integrative node of the skeletal muscle periphery. The sarcolemmal dystrophin node is involved in the maintenance of fiber stability, the provision of cellular signaling cascades, organizer of cytoskeletal networks and costameric anchor for lateral force transmission.
  • 994
  • 19 Feb 2021
Topic Review
Skeletal Muscle and Stress Proteins
All organisms and cells respond to various stress conditions by up-regulating the expression and/or activation of a group of proteins called heat shock proteins (HSPs). Although their expression is induced by several stimuli, they are commonly recognized as HSPs due to the first experiments showing their increased transcription after application of heat shock. These proteins are molecular chaperones mainly involved in assisting protein transport and folding, assembling multimolecular complexes, and triggering protein degradation by proteasome. In addition, they play a crucial role in gene expression regulation, DNA replication, signal transduction, cell differentiation, apoptosis, cellular senescence or immortalization, and intercellular communications. Heat shock proteins are classified according to their molecular weight in super heavy, 100, 90, 70, 60, 40, and small HSPs. Although they are the most highly conserved, ubiquitous, and abundant proteins in all organisms, their cellular stress response can depend on the class and stimulus.
  • 993
  • 16 Apr 2021
Topic Review
Edible Mushrooms in Muscle Foods
Mushrooms are valued around the world as culinary delicacies and are popularly known as “vegetable meat” in many cultures. Botanically, they are the fruiting bodies of macroscopic filamentous saprophytic fungi that grow above ground. Mushrooms are considered as next-generation healthy food components. Owing to their low content of fat, high-quality proteins, dietary fibre, and the presence of nutraceuticals, they are ideally preferred in the formulation of low-caloric functional foods.
  • 993
  • 11 May 2021
Topic Review
The Chloroplast Epitranscriptome
Here, we report about epitranscriptomic methods for the identification of RNA modifications, bioinformatic tools, and the potential physiological roles of RNA modifiers and interpreters in plant nuclear/cytoplasmic gene expression related to chloroplast functions and the post-transcriptional fate of chloroplast RNAs.
  • 993
  • 03 Aug 2021
Topic Review
Bio-Photonic Cavities
An eco-friendly approach to usual optical cavities, in which an electromagnetic radiation can release energy to matter by interacting with its molecular or atomic structure. Based on bio-inspired and biodegradable meta-surfaces, able to behave as a resonator for light, their optical response can be engineered at will to accomplish a particular optical task.  
  • 993
  • 24 Nov 2021
Topic Review
Protein Sorting at the Outer Mitochondrial Membrane
Mitochondria are double membrane-bound organelles consisting of an outer membrane, intermembrane space (IMS), inner membrane, and matrix that play critical functions in cells including metabolism, energy production, regulation of intrinsic apoptosis, and maintenance of calcium homeostasis. Mitochondria are fascinatingly equipped with their own genome and machinery for transcribing and translating 13 essential proteins of the oxidative phosphorylation system (OXPHOS). The rest of the proteins (99%) that function in mitochondria in the various pathways described above are nuclear-transcribed and synthesized as precursors in the cytosol. These proteins are imported into the mitochondria by the unique mitochondrial protein import system that consists of seven machineries. Proper functioning of the mitochondrial protein import system is crucial for optimal mitochondrial deliverables, as well as mitochondrial and cellular homeostasis.
  • 993
  • 17 May 2023
Topic Review
Intracellular Ca2+ Signalling in the Pathogenesis of Acute Pancreatitis
Intracellular Ca2+ signaling is a major signal transduction pathway in non-excitable cells, responsible for the regulation of a variety of physiological functions. In the secretory epithelial cells of the exocrine pancreas, such as acinar and ductal cells, intracellular Ca2+ elevation regulates digestive enzyme secretion in acini or fluid and ion secretion in ductal cells. Although Ca2+ is a uniquely versatile orchestrator of epithelial physiology, unregulated global elevation of the intracellular Ca2+ concentration is an early trigger for the development of acute pancreatitis. Regardless of the aetiology, different forms of acute pancreatitis all exhibit sustained intracellular Ca2+ elevation as a common hallmark.
  • 992
  • 17 Jun 2020
Topic Review
Nuclear Magnetic Resonance and Metabolomics
The use of nuclear magnetic resonance spectroscopy (NMR) for structure determination and the quantification of small molecules has a long history in successfully characterizing the chemical composition of biological systems. One of the earliest applications of NMR included the use of 31P and 13C NMR to monitor the energetic and redox status of cells and tissues. While these studies demonstrated the value of NMR for metabolism, a renaissance occurred with the emergence of metabolomics in the early 2000s. Metabolomics is defined as the broad range analysis of measurable small molecules in biological samples. 
  • 992
  • 26 Aug 2022
Topic Review
Classification of Trinucleotides/Codons
Ariadne’s thread on the path of our discovery of DNA and genetic code symmetries was our trinucleotide classification. Trinucleotides of each DNA genome and codons of the genetic code consist of four nitrogenous bases: two purines (adenine (A) and guanine (G)) and two pyrimidines (cytosine (C) and thymine (T) or uracil (U)). Thus, three of the bases are found in both DNA and the genetic code, whereas thymine is unique to DNA, and uracil is unique to the genetic code. A nucleotide is formed in the cell when the base attaches itself to the 1′ carbon of the sugar and phosphate attaches itself to the 5′ carbon of the same sugar the nucleotide takes its name from.
  • 991
  • 04 Aug 2023
Topic Review
Mitochondrial Electron Transport Pathway Components
All plants contain an alternative electron transport pathway (AP) in their mitochondria, consisting of the alternative oxidase (AOX) and type 2 NAD(P)H dehydrogenase (ND) families, that are thought to play a role in controlling oxidative stress responses at the cellular level. These alternative electron transport components have been extensively studied in plants like Arabidopsis and stress inducible isoforms identified, but we know very little about them in the important crop plant chickpea. Previously we demonstrated AOX  activity in purified mitochondria from chickpea, identified the genes that encode the AOX isoforms and analysed their relative transcript levels. Here we do the same for NDs, and also explore the response of all AP gene transcripts to salinity stress in leaves of chickpea cultivars differing in their salinity response. A coordinated up-regulation of particular AP genes suggests that the mitochondrial alternative pathway of respiration is an important facet of the stress response in chickpea, in high Na accumulators in particular, despite high capacities for both of these activities in leaf mitochondria of non-stressed chickpeas.
  • 990
  • 02 Nov 2020
Topic Review
Nuclear P38
One of the hallmarks of MAPK signaling is the nuclear translocation of some of its components upon stimulation. This is important for the regulation of transcription, activation of enzymes and stabilisation of proteins that lead to the induced  processes involved in the response to the particular stimulation or pathologies. Here we describe the nuclear function regulation and mechanism of translocation of two central MAPKs, namely P38α/β that are involved in the regulation of a variety of processes including mainly stress response. 
  • 990
  • 26 Oct 2020
Topic Review
Single Cell RNAseq of PBMCs in Stored Blood
With highly sensitive single cell RNA-seq (scRNAseq), our study highlights the effects of blood storage on PBMCs, e.g. gene sets highly relevant to human diseases (NF-kB, AP-1 signaling) are upregulated, and advocates for scRNAseq/bulk RNAseq experiments of PBMCs from fresh blood.
  • 990
  • 06 Jan 2023
Topic Review Peer Reviewed
Trefoil Factor Family (TFF) Peptides
Trefoil factor family (TFF) peptides mainly consist of characteristic TFF domains, which contain about 40 amino acid residues, including 6 conserved cysteine residues. TFF peptides possess a single (mammalian TFF1 and TFF3), two (mammalian TFF2, Xenopus laevis xP2) or four TFF domains (X. laevis xP4). They exhibit lectin activities and are characteristic exocrine products of the mucous epithelia. Here, they play different roles for mucosal protection and the innate immune defense: TFF1 is a gastric tumor suppressor; TFF2 builds a lectin complex with the mucin MUC6, physically stabilizing the inner gastric mucus layer; and TFF3 forms a disulfide-linked heterodimer with IgG Fc binding protein (FCGBP), probably preventing the infiltration of microorganisms. Minor amounts of TFF peptides are endocrine products of the immune and nervous systems. Pathologically, TFF peptides are linked to inflammation. There are increasing indications that TFF peptides can antagonize cytokine receptors, such as receptors for IL-1β, IL-6, and TNFα (thereby acting as anti-inflammatory peptides). TFF peptides can probably also activate a variety of receptors, such as CXCR4. The TFF domain is a unique shuffled module which is also present in a number of mosaic proteins, such as zona pellucida proteins, sugar degrading enzymes and frog skin mucins. Here, their function seems to be defined by a lectin activity, which might even allow a role in fertilization.
  • 989
  • 13 Apr 2022
Topic Review
Principles of NMR and MRI
Depending on the appropriately tuned amplifiers and transceiver coils, in theory, any nuclear magnetic resonance (NMR) active nucleus can be used for imaging by MRI. A nucleus with a spin quantum number of ½ (e.g., 1H, 3He, 13C, 14N, 15N, 19F, 19O, 31P, etc.) is designated to be in two spin states and the direction of spin alignment depends on the sign (+/−) of the gyromagnetic ratio, one of the two spin states will align along the magnetic field (ground state, lower energy), whereas the other one will align against it (excited state, higher energy). When an external magnetic field is applied, the spins in the ground state can be promoted to the excited state after absorbing the energy. Upon the termination of the external magnetic field, the spin returns to its equilibrium state (ground state) by a process called relaxation. There are two processes involved, each with an exponential time constant (Ti, i = 1,2): ‘T1’ (longitudinal or spin-lattice) or ‘T2’ (transverse or spin-spin) relaxation times. These parameters help in determining the signal/contrast-to-noise ratio (SNR) and the image resolution.
  • 989
  • 18 Feb 2022
Topic Review
Waste Clearing in Retinal Pigment Epithelium Cells
Waste clearing in retinal pigment epithelium (RPE) cells includes proteasomal degradation, heterophagy, macroautophagy and mitophagy. Exosomes can also be involved in waste removal in RPE cells. The ubiquitin proteasome system (UPS) is mainly responsible for degradation of damaged or no longer needed proteins. Autophagy can degrade damaged organelle and may also take a part in degradation proteins when other clearance processes are failed. RPE cells phagocytose used photoreceptors outer segments (POS) with their subsequent autophagy-lysosomal degradation. 
  • 989
  • 03 Mar 2022
Topic Review
MS-Based Proteomics for Bipolar Disorder Potential Biomarkers Assessment
Bipolar disorder (BD) is a clinically heterogeneous condition, presenting a complex underlying etiopathogenesis that is not sufficiently characterized. Without molecular biomarkers being used in the clinical environment, several large screen proteomics studies have been conducted to provide valuable molecular information. Mass spectrometry (MS)-based techniques can be a powerful tool for the identification of disease biomarkers, improving prediction and diagnosis ability.
  • 989
  • 27 May 2022
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