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Topic Review
Novel Pathogenic Mucorales Identified by Silkworm
Mucormycosis, a rare but highly fatal infection, is caused by fungi of the order Mucorales. Due to their ubiquitous nature, reduced susceptibility to antifungals, acid tolerance, and ability to infect immunocompromised patients through rapid dissemination, these fungi have been frequently reported to infect the COVID-19 patients. In order to develop strategies to overcome mucormycosis, it is essential to understand and identify novel Mucorales present in the environment. 
  • 1.2K
  • 14 Dec 2021
Topic Review
Manipulating Microbiota to Treat Atopic Dermatitis
Atopic dermatitis (AD) is a globally prevalent skin inflammation with a particular impact on children. Current therapies for AD are challenged by the limited armamentarium and the high heterogeneity of the disease. Thus, radically different approaches are needed to address a significant unmet need in AD patients. A novel promising therapeutic target for AD is the microbiota.
  • 1.2K
  • 13 Jun 2022
Topic Review
Intestinal Microbiota as a Contributor to Chronic Inflammation
The gut microbiota is a crucial factor in maintaining homeostasis. The presence of commensal microorganisms leads to the stimulation of the immune system and its maturation. In turn, dysbiosis with an impaired intestinal barrier leads to accelerated contact of microbiota with the host’s immune cells. Microbial structural parts, i.e., pathogen-associated molecular patterns (PAMPs), such as flagellin (FLG), peptidoglycan (PGN), lipoteichoic acid (LTA), and lipopolysaccharide (LPS), induce inflammation via activation of pattern recognition receptors. Microbial metabolites can also develop chronic low-grade inflammation, which is the cause of many metabolic diseases. 
  • 1.2K
  • 29 Nov 2021
Topic Review
The Weissella Genus: Clinically Treatable Bacteria
Weissella is a genus earlier considered a member of the family Leuconostocaceae, which was reclassified into the family Lactobacillaceae in 1993. There have been studies emphasizing the probiotic and anti-inflammatory potential of various species of Weissella, of which W. confusa and W. cibaria are the most representative. Other species within this genus include: W. paramesenteroides, W. viridescens, W. halotolerans, W. minor, W. kandleri, W. soli, W. ghanensis, W. hellenica, W. thailandensis, W. fabalis, W. cryptocerci, W. koreensis, W. beninensis, W. fabaria, W. oryzae, W. ceti, W. uvarum, W. bombi, W. sagaensis, W. kimchi, W. muntiaci, W. jogaejeotgali, W. coleopterorum, W. hanii, W. salipiscis, and W. diestrammenae.
  • 1.2K
  • 23 Dec 2022
Topic Review
Biofilm Formation Based on Studies with Pseudomonas aeruginosa
Studies with the bacterium P. aeruginosa provide important information about the attachment process. One important consideration is how bacteria sense a surface. In P. aeruginosa, there are two distinct surface sensing mechanisms. The first one involves a WSP chemosensory system. In response to the surface contact, the WSP system stimulates the production of cyclic diguanylate. The initial event is uncertain; it probably involves distortion of the cell membrane, which then activates membrane proteins. A second surface sensing mechanism involves type 4 pili. Upon contact with the surface, the methyl-accepting chemotaxis protein Pil J transduces a signal to the protein CyaB, stimulating its activity. 
  • 1.2K
  • 30 Nov 2022
Topic Review
Caseinolytic Protease Protease Families
Bacterial proteases participate in the proteolytic elimination of misfolded or aggregated proteins, carried out by members of the AAA+ protein superfamily such as Hsp100/Clp (heat shock protein-100/caseinolytic protease), Lon, and FtsH. It is estimated that the Clp and Lon families perform around 80% of cellular proteolysis in bacteria. The HSP100/Clp family of ATPases plays crucial roles in the folding, assembly, and degradation of proteins during normal growth and, mainly, under stress-inducing conditions. This family is formed by several ATPase chaperones and the peptidase ClpP (caseinolytic protease proteolytic subunit).
  • 1.2K
  • 18 Jan 2023
Topic Review
State-of the-Art Constraint-Based Modeling of Microbial Metabolism
Methanotrophy is the ability of an organism to capture and utilize the greenhouse gas, methane, as a source of energy-rich carbon. Over the years, significant progress has been made in understanding of mechanisms for methane utilization, mostly in bacterial systems, including the key metabolic pathways, regulation and the impact of various factors (iron, copper, calcium, lanthanum, and tungsten) on cell growth and methane bioconversion. The implementation of -omics approaches provided vast amount of heterogeneous data that require the adaptation or development of computational tools for a system-wide interrogative analysis of methanotrophy. The genome-scale mathematical modeling of its metabolism has been envisioned as one of the most productive strategies for the integration of muti-scale data to better understand methane metabolism and enable its biotechnological implementation. 
  • 1.2K
  • 03 Jan 2024
Topic Review
Antibiofilm Therapeutics Strategies to Overcome Antimicrobial Drug Resistance
Biofilms embrace the capability to resist and survive harsh environmental conditions and defeat the host immune system, so there is a desire for exploring new antibiofilm agents. Antibiofilm agents that can abet the process of dismantling the biofilm has provided research strategies for designing new biofilm dispersal inducers.
  • 1.2K
  • 10 Mar 2022
Topic Review
Role of Spermidine in Human Pathogenic Viruses Infection
The triamine spermidine is a key metabolite of the polyamine pathway. It plays a crucial role in many infectious diseases caused by viral or parasitic infections. Spermidine and its metabolizing enzymes, i.e., spermidine/spermine-N1-acetyltransferase, spermine oxidase, acetyl polyamine oxidase, and deoxyhypusine synthase, fulfill common functions during infection in parasitic protozoa and viruses which are obligate, intracellular parasites. The competition for this important polyamine between the infected host cell and the pathogen determines the severity of infection in disabling human parasites and pathogenic viruses.
  • 1.2K
  • 16 Jun 2023
Topic Review
The Structure of Diphtheria Toxin
Only three Corynebacterium species are known to produce a lethal exotoxin called diphtheria toxin. These are C. diphtheriae, C. ulcerans and C. pseudotuberculosis. 
  • 1.2K
  • 03 Nov 2022
Topic Review
Shiga Toxin-Producing Escherichia coli
Shiga toxins (Stx) of Shiga toxin-producing Escherichia coli (STEC) are generally encoded in the genome of lambdoid bacteriophages, which spend the most time of their life cycle integrated as prophages in specific sites of the bacterial chromosome. Upon spontaneous induction or induction by chemical or physical stimuli, the stx genes are co-transcribed together with the late phase genes of the prophages. After being assembled in the cytoplasm, and after host cell lysis, mature bacteriophage particles are released into the environment, together with Stx. As members of the group of lambdoid phages, Stx phages share many genetic features with the archetypical temperate phage Lambda, but are heterogeneous in their DNA sequences due to frequent recombination events. In addition to Stx phages, the genome of pathogenic STEC bacteria may contain numerous prophages, which are either cryptic or functional. These prophages may carry foreign genes, some of them related to virulence, besides those necessary for the phage life cycle.
  • 1.2K
  • 13 Apr 2021
Topic Review
Rhodococci
Rhodococci are relatively new objects of environmental and industrial biotechnologies. Their metabolic potential for biodegradation and inactivation of complex pollutants, in addition to their mechanisms of stress resistance, are far from being exhausted. However, one should be conscious that some members of this genus are pathogens, and their number is gradually expanding, which clearly limits the practical application of rhodococci.
  • 1.2K
  • 24 Nov 2021
Topic Review
Co-Inoculation of three species
The adoption of multi-species starter cultures is highly considered in modern winemaking to enhance the complexity and wine attributes. However, the valuation of strains compatibility at the industrial-scale is essential to guarantee the quality and the safety during the process. This concept is particularly important when the starter is composed of non-Saccharomyces, Saccharomyces spp. and malolactic bacteria, three organisms with dissimilar biological properties and oenological implication.
  • 1.2K
  • 28 Oct 2020
Topic Review
Metabolic Engineering of Wine Strain
The adaptive laboratory evolution (ALE) is a technique of strain optimization that assumes serial or continuous culturing of a particular yeast strain for many generations under selective pressure, such as high ethanol content, high osmolarity etc., thus directing the accumulation of mutants with desired phenotype. As compared to stochastic and laborious CSI techniques, ALE methods are more targeted and convenient . The power of this approach towards optimizing wine yeast is exemplified by generation of strains with altered production of important metabolites (ethanol, glycerol, succinic, and acetic acid) and more rapid sugar utilization, strains with increased sulfite tolerance and glycerol accumulation, strains with improved resistance towards KCL-induced osmotic stress with increased glycerol and reduced ethanol content, as well as enhanced viability and resveratrol production.
  • 1.2K
  • 03 Nov 2020
Topic Review
Bacteriophage-Mediated Control of Phytopathogenic Xanthomonads
Xanthomonads, members of the family Xanthomonadaceae, are economically important plant pathogenic bacteria responsible for infections of over 400 plant species. Bacteriophage-based biopesticides can provide an environmentally friendly, effective solution to control these bacteria. Bacteriophage-based biocontrol has important advantages over chemical pesticides, and treatment with these biopesticides is a minor intervention into the microflora. However, bacteriophages’ agricultural application has limitations rooted in these viruses’ biological properties as active substances. These disadvantageous features, together with the complicated registration process of bacteriophage-based biopesticides, means that there are few products available on the market. 
  • 1.2K
  • 04 Aug 2021
Topic Review
Human Coronavirus
Coronaviruses (CoVs) are a large group of viruses common among many animals, including humans. They can cause respiratory illnesses in humans and gastrointestinal illnesses in animals. Under the electron microscope, virions of CoVs have large peplomers that make it look like a crown, hence the name corona, meaning “crown” or “halo. The emerging coronavirus disease (COVID-19) swept across the world, affecting more than 200 countries and territories.
  • 1.2K
  • 20 May 2022
Topic Review
Aeromonas spp.
Aeromonas a Gram-negative bacillus, positive for oxidase and catalase tests, a glucose fermenter, and it is resistant to vibriostatic O/129 (2,4-diamino-6,7-diisopropylpteridine). In humans, it can cause intestinal and extra-intestinal infections. It is important in the medical area, mainly in patients with diarrhea, or with infections in the skin and soft tissue; moreover, it can cause bacteremia, which progresses to sepsis, or endocarditis.
  • 1.2K
  • 26 Jun 2021
Topic Review
Nanocellulose-Based Membrane Filtration Material
Nanocellulose is among the emerging materials of this century and several studies have proven its use in filtering microbes. Its high specific surface area enables the adsorption of various microbial species, and its innate porosity can separate various molecules and retain microbial objects.
  • 1.2K
  • 08 Oct 2021
Topic Review
Heme-Copper Oxidases with Nitrite and Nitric Oxide
Nitrite and nitric oxide (NO), two active and critical nitrogen oxides linking nitrate to dinitrogen gas in the broad nitrogen biogeochemical cycle, are capable of interacting with redox-sensitive proteins. The interactions of both with heme-copper oxidases (HCOs) serve as the foundation not only for the enzymatic interconversion of nitrogen oxides but also for the inhibitory activity.
  • 1.2K
  • 26 Jan 2022
Topic Review
Natural Milk Microbiota
Profound bioactivities of raw breastmilk include benefits attributed to the dense and diverse natural microbiota, termed natural microbiota hereafter. Infants benefit from breastfeeding not just nutritionally, but by both ‘seeding and feeding’ the infant gut , providing microbes that seed the naïve gastrointestinal (GI or gut) ecosystem and nutritive components that feed both infant and microbial cells.
  • 1.2K
  • 11 Nov 2021
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