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Topic Review
Premna odorata Blanco
In-depth botanical characterization was performed on Premna odorata Blanco (Lamiaceae) different organs for the first time. The leaves are opposite, hairy and green in color. Flowers possess fragrant aromatic odors and exist in inflorescences of 4–15 cm long corymbose cyme-type. In-depth morphological and anatomical characterization revealed the great resemblance to plants of the genus Premna and of the family Lamiaceae, such as the presence of glandular peltate trichomes and diacytic stomata. Additionally, most examined organs are characterized by non-glandular multicellular covering trichomes, acicular, and rhombic calcium oxalate crystals. P. odorata leaves n-hexane fraction revealed substantial anti-tuberculous potential versus Mycobacterium tuberculosis, showing a minimum inhibition concentration (MIC) of 100 μg/mL. Metabolic profiling of the n-hexane fraction using gas-chromatography coupled to mass spectrometry (GC/MS) analysis revealed 10 major compounds accounting for 93.01%, with trans-phytol constituting the major compound (24.06%). The virtual screening revealed that trans-phytol highly inhibited MTB C171Q receptor as M. tuberculosis KasA (β-ketoacyl synthases) with a high fitting score (∆G = −15.57 kcal/mol) approaching that of isoniazid and exceeding that of thiolactomycin, the co-crystallized ligand. Absorption, distribution, metabolism, excretion and toxicity predictions (ADME/TOPKAT) revealed that trans-phytol shows lower solubility and absorption levels when compared to thiolactomycin and isoniazid. Still, it is safer, causing no mutagenic or carcinogenic effects with higher lethal dose, which causes the death of 50% (LD50). Thus, it can be concluded that P. odorata can act as a source of lead entities to treat tuberculosis.
  • 1.7K
  • 12 Oct 2021
Topic Review
Fungal Pellets Towards Heavy Metals
The biosorption on fungal pellets is getting attention as an attractive water remediation technique, as it offers an enhanced biomass separation and a high resilience in severe environmental conditions. In this entry, biosorption capacity of fungal pellets towards heavy metals was reviewed. Available data about the adsorption capacity of pellets, their removal efficiency, and the operational conditions used were collected and synthesized. It was found that the biosorption of complex mixtures of pollutants on fungal pellets is scarcely studied, as well as the interfering effect of anions commonly found in water and wastewater. Furthermore, there is a lack of research with real wastewater and at pilot and large scale. These topics need to be further explored to take full advantage of fungal pellets on improving the quality of aquatic systems.
  • 1.7K
  • 04 May 2021
Topic Review
Wheat
Wheat is a valuable source of essential nutrients, providing carbohydrate-based energy and fiber, protein, B vitamins, calcium, magnesium, phosphorus, potassium, zinc, and iron. In low and medium-income countries, grain-based foods still make up the central part of the diet. The wheat seed can be ground into flour or semolina, for example, which form the essential ingredients of bread, pasta, noodles, and other food products, essentially the primary source of nutrients for most of the world population.
  • 1.7K
  • 21 Aug 2021
Topic Review
Cladistics
Cladistics (/kləˈdɪstɪks/; from grc κλάδος (kládos) 'branch') is an approach to biological classification in which organisms are categorized in groups ("clades") based on hypotheses of most recent common ancestry. The evidence for hypothesized relationships is typically shared derived characteristics (synapomorphies) that are not present in more distant groups and ancestors. However, from an empirical perspective, common ancestors are inferences based on a cladistic hypothesis of relationships of taxa whose character states can be observed. Theoretically, a last common ancestor and all its descendants constitute a (minimal) clade. Importantly, all descendants stay in their overarching ancestral clade. For example, if the terms worms or fishes were used within a strict cladistic framework, these terms would include humans. Many of these terms are normally used paraphyletically, outside of cladistics, e.g. as a 'grade', which are fruitless to precisely delineate, especially when including extinct species. Radiation results in the generation of new subclades by bifurcation, but in practice sexual hybridization may blur very closely related groupings. As a hypothesis, a clade can only be rejected if some groupings were explicitly excluded. It may then be found that the excluded group did actually descend from the last common ancestor of the group, and thus emerged within the group. ("Evolved from" is misleading, because in cladistics all descendants stay in the ancestral group). Upon finding that the group is paraphyletic this way, either such excluded groups should be granted to the clade, or the group should be abolished. Testifying to human focus, bias and perhaps exceptionalism, humans have never been placed in a paraphyletic group, whereas most other organisms have been. Branches down to the divergence to the next significant (e.g. extant) sister are considered stem-groupings of the clade, but in principle each level stands on its own, to be assigned a unique name. For a fully bifurcated tree, adding a group to a tree also adds an additional (named) clade, and potentially a new level. Specifically, also extinct groups are always put on a side-branch, not distinguishing whether an actual ancestor of other groupings was found. The techniques and nomenclature of cladistics have been applied to disciplines other than biology. (See phylogenetic nomenclature.) Cladistics findings are posing a difficulty for taxonomy, where the rank and (genus-)naming of established groupings may turn out to be inconsistent. Cladistics is now the most commonly used method to classify organisms.
  • 1.7K
  • 19 Oct 2022
Topic Review
Cell Lines from Strawberry Fruits
Fleshy fruits are crucial in a healthy human diet but highly perishable due to their delicate texture at full ripe stage. Tomato and strawberry are leading crops which belongs to this fleshy fruit category, as well as models for ripening of climacteric and non-climateric fruits, respectively. In this regard, cell cultures derived from strawberry fruit at different developmental stages have been obtained to evaluate their potential use to study different aspects of strawberry ripening. Callus from leaf and cortical tissue of unripe-green, white, and mature-red strawberry fruits were induced in a medium supplemented with 11.3 M 2,4-dichlorophenoxyacetic acid (2,4-D) under darkness. This 2,4-D chemical reagent is an herbicide which mimics the action of the natural plant hormone auxin, widely used in plant cell culture. The transfer of the established callus from darkness to light induced the production of anthocyanin. The replacement of 2,4-D by abscisic acid (ABA) noticeably increased anthocyanin accumulation in green-fruit callus. Cell walls were isolated from the different fruit cell lines and from fruit receptacles at equivalent developmental stages and sequentially fractionated to obtain fractions enriched in soluble pectins, ester bound pectins, xyloglucans (XG), and matrix glycans tightly associated with cellulose microfibrils. These fractions were analyzed by cell wall carbohydrate microarrays. In fruit receptacle samples, pectins were abundant in all fractions, including those enriched in matrix glycans. The amount of pectin increased from green to white stage, and later these carbohydrates were solubilized in red fruit. Apparently, XG content was similar in white and red fruit, but the proportion of galactosylated XG increased in red fruit. Cell wall fractions from callus cultures were enriched in extensin and displayed a minor amount of pectins. Stronger signals of extensin antibodies were detected in sodium carbonate fraction, suggesting that these proteins could be linked to pectins. Overall, the results obtained suggest that fruit cell lines could be used to analyze hormonal regulation of color development in strawberry but that the cell wall remodelling process associated with fruit softening might be masked by the high presence of extensin in callus cultures.
  • 1.7K
  • 24 Nov 2020
Topic Review
Rational Vaccine Design
Vaccines are the most effective medical intervention due to their continual success in preventing infections and improving mortality worldwide. Early vaccines were developed empirically however, rational design of vaccines can allow us to optimise their efficacy, by tailoring the immune response. Establishing the immune correlates of protection greatly informs the rational design of vaccines. This facilitates the selection of the best vaccine antigens and the most appropriate vaccine adjuvant to generate optimal memory immune T cell and B cell responses. This review outlines the range of vaccine types that are currently authorised and those under development. We outline the optimal immunological correlates of protection that can be targeted. 
  • 1.7K
  • 29 Apr 2021
Topic Review
Biofluids: Storage of Biomarkers
In recent years, there has been an increase in knowledge of cancer, accompanied by a technological development that gives rise to medical oncology. An instrument that allows the implementation of individualized therapeutic strategies is the liquid biopsy. Currently, it is the most innovative methodology in medical oncology. Its high potential as a tool for screening and early detection, the possibility of assessing the patient’s condition after diagnosis and relapse, as well as the effectiveness of real-time treatments in different types of cancer. Liquid biopsy is capable of overcoming the limitations of tissue biopsies. The elements that compose the liquid biopsy are circulating tumor cells, circulating tumor nucleic acids, free of cells or contained in exosomes, microvesicle and platelets. Liquid biopsy studies are performed on various biofluids extracted in a non-invasive way, and they can be performed both from the blood and in urine, saliva or cerebrospinal fluid. The development of genotyping techniques, using the elements that make up liquid biopsy, make it possible to detect mutations, intertumoral and intratumoral heterogeneity, and provide molecular information on cancer for application in medical oncology in an individualized way in different types of tumors. Therefore, liquid biopsy has the potential to change the way medical oncology could predict the course of the disease.
  • 1.7K
  • 29 Oct 2020
Topic Review
Bioactive Compounds from Marine Sponges
Marine sponges are sessile invertebrates that can be found in temperate, polar and tropical regions. They are known to be major contributors of bioactive compounds, which are discovered in and extracted from the marine environment. The compounds extracted from these sponges are known to exhibit various bioactivities, such as antimicrobial, antitumor and general cytotoxicity.
  • 1.7K
  • 25 May 2021
Topic Review
Succession Pathways in Mixed Forests of Pacific Northwest
Forest succession is an ecological phenomenon that can span centuries. Nowadays it is recognized that stochastic events and disturbances play a pivotal role in forest succession. In spite of that, forest maps and management plans around the world are developed and focused on a unique “climax” community, likely due to the difficulty of quantifying alternative succession pathways. Our work demonstrated that a three-pathway stochastic succession model can mimic the observed landscape distribution among different stand types before commercial logging started in the region. We conclude that, while knowing the difficulty of parameterizing this type of models, their use is needed to recognize that for a given site, there may be multiple “climax” communities and hence forest management should account for them.
  • 1.7K
  • 29 Dec 2021
Topic Review
Zeaxanthin and Lutein in Humans
Many factors in the environment (including radiation, pathogens, and various stresses) prompt internal formation of oxidants that orchestrate beneficial adjustments in human metabolism and but can also lead to damage and disease. To prevent adverse effects of these oxidants, humans require antioxidants and anti-inflammatories, many of which are vitamins and other essential micronutrients that must be consumed with the diet. The xanthophylls zeaxanthin and lutein are unique human micronutrients that protect the integrity and function of biological membranes – especially in the human eye and brain.
  • 1.7K
  • 16 Feb 2021
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