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Topic Review
Artificial Intelligence in Biological Sciences
Artificial intelligence (AI), currently a cutting-edge concept, has the potential to improve the quality of life of human beings. The fields of AI and biological research are becoming more intertwined, and methods for extracting and applying the information stored in live organisms are constantly being refined. As the field of AI matures with more trained algorithms, the potential of its application in epidemiology, the study of host–pathogen interactions and drug designing widens. AI is now being applied in several fields of drug discovery, customized medicine, gene editing, radiography, image processing and medication management. More precise diagnosis and cost-effective treatment will be possible in the near future due to the application of AI-based technologies. In the field of agriculture, farmers have reduced waste, increased output and decreased the amount of time it takes to bring their goods to market due to the application of advanced AI-based approaches. Moreover, with the use of AI through machine learning (ML) and deep-learning-based smart programs, one can modify the metabolic pathways of living systems to obtain the best possible outputs with the minimal inputs. Such efforts can improve the industrial strains of microbial species to maximize the yield in the bio-based industrial setup. 
  • 1.6K
  • 12 Oct 2022
Topic Review
Plasmonic biosensing schemes for virus
The uncertain proportions of pandemic outbreaks have triggered the need of reliable and cost-effective protocols easily adaptable to the changing virulence of virus strains. In recent years, plasmonic biosensors are being increasingly applied for clinical diagnosis of viral and other infectious diseases. Typical plasmonic biosensing strategies rely on the versatility of SPR and LSPR as label-free detection systems capable of monitoring binding interactions in a short period of time. Nevertheless, the incorporation of technological advancements has precipitated the development of nanomaterial-based applications for improving the sensitivity and specificity of classical configurations. The unique optical properties of plasmonic nanostructures has been exploited in combination with SERS colorimetric, fluorescence or luminescence enhancement for viral diagnosis. Likewise, the development of plasmonic virus sensing approaches has also benefitted from the variety of virus biomarkers. Thus, a high number of virus plasmonic biosensors have prompted the advance of novel functionalization strategies to achieve the effective coverage of the biological receptor while ensuring the affinity and specificity towards the target viral nucleic acids, proteins or whole virus. The huge potential for single virus detection along with the effectiveness and simplicity of current plasmonic configurations will impact on the routine surveillance of virus in clinical settings during this decade.
  • 1.5K
  • 27 Oct 2020
Topic Review
α-Lactalbumin
α-Lactalbumin (α-LA) is a small (Mr 14,200), acidic (pI 4-5), Ca2+-binding protein. α-LA is a regulatory component of lactose synthase enzyme system. α-LA is very important in infant nutrition since it constitutes a large part of the whey and total protein in human milk. The protein possesses a single strong Ca2+-binding site, which can also bind Mg2+, Mn2+, Na+, K+, and some other metal cations. It contains several distinct Zn2+-binding sites. Physical properties of α-LA strongly depend on the occupation of its metal binding sites by metal ions. In the absence of bound metal ions α-LA is in the molten globule-like state. The binding of metal ions, and especially of Ca2+, increases stability of α-LA against action of heat, various denaturing agents, and proteases, while the binding of Zn2+ to the Ca2+-loaded protein decreases its stability and causes its aggregation. The thermal unfolding of apo-α-LA takes place in the temperature region from 10 to 30 °C. The binding of Ca2+ under the conditions of low ionic strength shifts the thermal transition to higher temperatures by more than 40 °C. The binding of Mg2+, Na+, and K+ increases protein stability as well. The stronger an ion binds to the protein, the more pronounced the thermal transition shift. All four classes of surfactants (anionic, cationic, non-ionic, and zwitterionic) denature α-LA and the denaturation involves at least one intermediate. The position of any denaturation transition in α-LA (half-transition temperature, half-transition pressure, half-transition denaturant concentration) depends upon metal ion concentration in solution (especially if this metal ion is Ca2+). Therefore, values of denaturation temperature or urea or guanidine hydrochloride denaturing concentration are relatively meaningless for α-LA without specifying the metal ion content(s) and their solution concentration(s). At a neutral or slightly acidic pH at a physiological temperature, α-LA can associate with membranes. The conformations of the membrane-bound protein range from native-like to molten globule-like states. At a low pH, α-LA penetrates the interior of the negatively charged membranes and exhibits a molten globule conformation. Depending on external conditions, α-LA can form amyloid fibrils, amorphous aggregates, nanoparticles, and nanotubes. At pH 2, α-LA in the classical molten globule conformation can form amyloid fibrils. Some of these aggregated states of α-LA (nanoparticles, nanotubes) can be used in practical applications such as drug delivery to tissues and organs. The structure and self-assembly behavior of α-LA are governed by a subtle balance between hydrophobic and polar interactions and this balance can be finely tuned through the addition of selected substances. Small size nanoparticles of α-LA (100 to 200 nm) can be obtained with the use of various desolvating agents. Partially hydrolyzed α-LA can form nanotubes. α-LA and some of its fragments possess bactericidal and antiviral activities. Complexes of partially unfolded α-LA with oleic acid showed significant cytotoxicity to various tumor and bacterial cells. α-LA in such complexes plays a role of a delivery carrier of cytotoxic fatty acid molecules into tumor cells across the cell membrane. Cytotoxic protein–oleic acid complexes possess a common core-shell structure, where an oily core is made of a micellar oleic acid, whereas a proteinaceous shell, which stabilizes the oleic acid micelle, is formed from the flexible, partially unfolded proteins. These complexes called liprotides (lipids and partially denatured proteins), which are potential novel anti-tumorous drugs, can be considered as molten globular containers filled with the toxic oil.
  • 1.5K
  • 31 Aug 2020
Topic Review
Nanoparticles
Iron oxide nanoparticles are frequently used in various biomedical applications, in particular as magnetic resonance imaging contrast agents in liver imaging. Indeed, number of iron oxide nanoparticles have been withdrawn due to their poor clinical performance and/or toxicity issues. In the literature it has been criticized that failure of clinical applications is to a large extent due to poor understanding of the sub-cellular molecular targets of nanoparticles. Nanoparticles were found to change the activity of autophagic flux via lysosome-dependent signalling. However, precise underlying mechanisms of such modulation remain poorly understood.
  • 1.5K
  • 03 Feb 2021
Topic Review
Heart Failure
Heart failure (HF) is marked by dampened cardiac contractility. A mild therapeutic target that improves contractile function without desensitizing the β-Adregenric system during HF may improve cardiac contractility and potentially survival. Inhibiting PKCα activity may fit the criteria of the therapeutic target with milder systemic effects that still boosts contractility in HF patients. PKCα activity has been observed to increase during HF. This increase in PKCα activity is perplexing because it is also accompanied by the up-regulation of a molecular braking mechanism.
  • 1.4K
  • 17 Feb 2024
Topic Review
Calcium Phosphate Nanocluster Complexes
Calcium phosphate nanocluster complexes comprise a core of amorphous calcium phosphate and a sequestering shell of intrinsically disordered phosphopeptides or phosphoproteins. Solutions containing the nanocluster complexes can be thermodynamically stable or metastable due to a tendency to form a precipitate enriched in calcium phosphate. Theoretical and biophysical studies with native and recombinant phosphopeptides have shown how the radius of the core and the stability of the solution depend on the concentration of the sequestering peptide, its affinity for the calcium phosphate and its concentration in relation to the concentration of the calcium phosphate. The thickness of the sequestering shell depends on the conformation of the peptide on the core surface. A sequestering peptide is a flexible sequence including one or more short linear motifs, each of which usually contains several phosphorylated and other acidic residues.  These are the main binding sites to the core so that a peptide with several binding motifs can forms loops and trains on the core surface. Calcium phosphate nanocluster complexes were first identified as substructures of casein micelles in milk and have been prepared as individual particles from peptides derived from caseins and osteopontin. Stable biofluids containing nanocluster complexes cannot cause soft tissues to become mineralized whereas stable or metastable biofluids containing nanocluster complexes can help to mineralize hard tissues.
  • 1.4K
  • 09 Nov 2020
Topic Review
Collagen Fibrils
Collagen fibrils are dissected from collagen rich tissues, such as rat tail tendons. Tissue samples such as tendons are sectioned with scalpels and washed with deionized water or phosphate-buffered saline. Subsequently, bundles of collagen fibers are collected with tweezers and then deposited on clean substrates such as microscope glass slides.
  • 1.3K
  • 06 Apr 2022
Topic Review
Lipids of Sulfolobus spp.
Archaea, and thereby, Sulfolobus spp. exhibit a unique lipid composition of ether lipids, which are altered in regard to the ratio of diether to tetraether lipids, number of cyclopentane rings and type of head groups, as a coping mechanism against environmental changes. Sulfolobales mainly consist of C40-40 tetraether lipids (caldarchaeol) and partly of C20-20 diether lipids (archaeol). A variant of caldarchaeol called glycerol dialkylnonitol tetraether (GDNT) has only been found in Sulfolobus and other members of the Creanarchaeota phylum so far. Altering the numbers of incorporated cyclopentane rings or the the diether to tetraether ratio results in more tightly packed membranes or vice versa.
  • 1.2K
  • 26 Oct 2020
Topic Review
Thermal Load and Heat Transfer in Dental Implants
Heat is a kinetic process whereby energy flows from between two systems, hot-to-cold objects. In oro-dental implantology, conductive heat transfer/(or thermal stress) is a complex physical phenomenon to analyze and consider in treatment planning. Hence, ample research has attempted to measure heat-production to avoid over-heating during bone-cutting and drilling for titanium (Ti) implant-site preparation and insertion, thereby preventing/minimizing early (as well as delayed) implant-related complications and failure. The goal is two-fold: (A) the standard heat equation is proposed to be solved, modifying the imposed boundary conditions without any additional source term, and on the other hand, (B) a gap is filled in the literature via obtaining an exact analytical solution of a somewhat simplified problem, which nevertheless, encapsulates the physics and reproduces the results already found in previous works via numerical analyses. In addition, for the first time, the intrinsic time is introduced and involved herein, a “proper” time that characterizes the geometry of the dental implant fixture and overall system, and how the interplay between that time and the exposure time influences temperature changes, and subsequent implant survival, are shown. Thus, this work aims to complement the overall clinical diagnostic and treatment plan for enhanced biological one–implant interface and mechanical implant stability and success rates, whether for immediate or delayed implant loading strategies.
  • 1.2K
  • 11 Mar 2022
Topic Review Peer Reviewed
The Applications of Microphysiological Systems in Biomedicine: Impact on Urologic and Orthopaedic Research
Microphysiological systems (MPSs) are in vitro models that can incorporate dynamic stimuli such as flow, pressure and contraction in cell culture, enabling the formation of cellular architectures and retrieving physiological function often absent in conventional 2D-cell culture. MPS applications saw a substantial growth in recent years, drawing attention from industry as a strategy to optimize pre-clinical drug-development purposes, as well as from biomedical research, to fill a gap between in vivo and in vitro models. Several MPS platforms are now available and are employed in the development of bone and kidney complex systems for urologic and orthopaedic research. These advances have enabled, for example, the in vitro modelling of bone regeneration and renal drug secretion, and have dramatic potential to improve research into both orthopaedic and urology cancers. 
  • 1.1K
  • 16 Jun 2022
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