Genetic RyR2 Disease

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1		Spyros Zissimopoulos	--	1915	2022-08-17 10:55:15	\|
2	update references and layout	Rita Xu	Meta information modification	1915	2022-08-17 11:36:17	\|

This entry is adapted from the peer-reviewed paper 10.3390/biom12081030

The ryanodine receptor (RyR2) has a critical role in controlling Ca²⁺ release from the sarcoplasmic reticulum (SR) throughout the cardiac cycle. RyR2 protein has multiple functional domains with specific roles, and four of these RyR2 protomers are required to form the quaternary structure that comprises the functional channel. Numerous mutations in the gene encoding RyR2 protein have been identified and many are linked to a wide spectrum of arrhythmic heart disease. Gain of function mutations result in a hyperactive channel that causes excessive spontaneous SR Ca²⁺ release, but rare hypoactive loss of function mutations have also been described.

ryanodine receptor catecholaminergic polymorphic ventricular tachycardia calcium release deficiency syndrome

1. Introduction

Cardiac contraction is initiated by a wave of electrical activity (action potential) triggering a rapid rise in intracellular Ca²⁺ concentration, which activates sarcomere contraction, followed by repolarization and Ca²⁺ removal that allows the heart to relax and refill ^[1]. Gene mutations in any of the proteins involved in excitation–contraction coupling (ECC) can lead to arrhythmogenic cardiac disease, most commonly, long QT and Brugada syndromes (repolarization abnormalities), catecholaminergic polymorphic ventricular tachycardia (CPVT) (dysregulated intracellular Ca²⁺), and dilated and hypertrophic cardiomyopathies (sarcomere dysfunction) ^[2]. Cardiomyocyte Ca²⁺ homeostasis is indeed an arrhythmogenic substrate ^[3]. For contraction of the adult human heart, plasma membrane depolarization induces Ca²⁺ influx via voltage-gated Ca²⁺ channels (also known as L-type Ca²⁺ channel or dihydropyridine receptor) located on invaginations of the sarcolemma called transverse (T)-tubules. This by itself is insufficient to trigger sarcomere contraction, but the rapid rise in Ca²⁺ activates ryanodine receptors (RyR2) located on the immediately opposing junctional sarcoplasmic reticulum (SR) through which a much larger Ca²⁺ release occurs in the form of Ca²⁺ sparks ^[4]. The near-synchronous activation of ~10⁴ Ca²⁺ sparks at the start of the action potential produces the cytosolic Ca²⁺ transient that activates the contractile apparatus within cardiac myocytes. For relaxation, cytosolic Ca²⁺ concentration returns to baseline with Ca²⁺ extrusion outside of the cell via the Na⁺/Ca²⁺ exchanger (NCX) to remove an amount equal to the extracellular Ca²⁺ entry source, and Ca²⁺ uptake into the SR via the sarco/endoplasmic reticulum Ca²⁺ ATPase (SERCA) to remove an amount equal to the SR Ca²⁺ release source. Imbalances in cardiomyocyte Ca²⁺ cycling, namely the Ca²⁺ fluxes across the plasma and SR membrane, can alter the action potential and lead to arrhythmia.

2. RyR2 Structure-–Function Relationships

The RyR is the largest known ion channel, consisting of four identical subunits of ~5000 amino acids each, which combine to form a single Ca²⁺ permeable pore. Three RyR isoforms are expressed in mammals, RyR1 (the predominant isotype in skeletal muscle), RyR2 (the predominant isotype in cardiac muscle), and RyR3. Considering its size, complexity, and responsibility for achieving both short-(beat-to-beat) and long-term maintenance of heart contraction, it is not surprising that many factors fine-tune RyR2 function. In the following, researchers aim to describe determinants of RyR2 regulation as interacting layers consisting of: the pore-forming domains, domains that directly interact with the pore, domains that indirectly regulate the pore through intermediaries, or interacting regulatory proteins.

Recent high-resolution cryo-electron microscopy (EM) studies reveal that the long RyR polypeptide chain is organized in distinct structural domains that are predominantly α-helical and face the cytoplasm ^[5]^[6] (Figure 1). They include the N-terminus domain (NTD) composed of sub-domains A/B/C, three SPRY domains including RyR repeat (RY) 1&2, junctional solenoid (JSol), bridging solenoid (BSol) consisting of sub-domains B&C flanking RY3&4, and core solenoid (CSol). According to a different nomenclature by Peng et al. ^[6], JSol is known as the “handle domain”, BSol is known as the “helical domain” but it was previously referred to as the “central domain” ^[7], and CSol is also known as the “central domain”. To avoid confusion with “central domain” terminology, researchers adopt the nomenclature by des Georges et al. ^[5]. The C-terminal ~500 residues contain the transmembrane domain (TMD) composed of six segments that anchor the protein on the SR membrane, followed by the short cytosolic C-terminus domain (CTD). The pore is formed by the S6 lining helix supported by S5 and the S5-S6 loop containing the selectivity filter.

Figure 1. A schematic illustration of human RyR2 domain organization and boundaries. Color-coded distribution of mutations associated with disease (top value) and their frequency within individual structural domains (bottom value). The six transmembrane segments (S) are represented by a vertical line. See Figure 2 below for a corresponding cartoon representation showing the arrangement of domains in 3D (using same color coding).

RyR2 Channel Self-Assembly

Although RyR2 is a macromolecular complex with cytosolic, SR integral, and luminal accessory proteins, the 4-subunit RyR2 self-assembly is necessary and sufficient to form a fully functional Ca²⁺ release channel. To understand how RyR2 is auto-regulated, researchers consider a reductionist, “bottom-up” approach starting from the pore. Expression of the last two TM segments together with the CTD forms a tetrameric cation permeable pore that is constitutively open ^[8]. The CTD self-associates to support RyR tetramerization required for the formation of functional channels ^[9]^[10]. On top of the pore sits the CSol acting as the channels’ gatekeeper. The CSol makes extensive contacts with the pore-forming region including the S2S3 loop, the extended cytosolic part of S6, and the CTD ^[5]^[6]. However, the expression of large constructs encompassing the CSol, TMD, and CTD form ion channels that remain largely open and leaky ^[11]^[12]^[13]. Clearly, the remaining domains are needed to support the closure of the pore and fully regulate the channel. They are not making direct contact with the pore-forming region, but their effects are mediated via the CSol. Indeed, the NTD, Jsol, Bsol, and CSol are involved in multiple intra- and inter-subunit interactions with each other ^[5]^[6]^[14]^[15]^[16]. The NTD also interacts with itself to promote channel closure as well as to support the formation of functional tetrameric RyR2 channels ^[17]^[18]^[19]. RyR2 activity is fine-tuned by the peripheral SPRY and RY domains, and their interactions with JSol and BSol ^[5]^[6].

3. Physiological RyR2 Regulators

The principal physiological RyR2 regulator is Ca²⁺ acting from both the cytosolic and SR luminal side. RyR2 is mostly inactive at low diastolic (~100 nM) cytosolic Ca²⁺ concentration ([Ca²⁺]). Membrane depolarization causes a rapid rise in [Ca²⁺] from nanomolar to micromolar levels in the narrow dyadic cleft formed between T-tubule and SR junctional membrane, which increases RyR2 activity in a sigmoidal function of cytosolic Ca²⁺ concentration. RyR2 can be fully activated at ~100 μM Ca²⁺ (reviewed in ^[20]^[21]). Recent cryo-EM and mutagenesis studies suggest that the cytosolic Ca²⁺-binding site is located at the CSol–CTD interface with residues E3848, E3922, and T4931 (coordinates for human RyR2) critical for Ca²⁺ interaction ^[5]^[22]^[23]^[24]. Interestingly, although the Ca²⁺-bound RyR structure reveals a contraction of the CSol that facilitates the dilation of the S6 bundle, the pore remains closed ^[5]^[22]. This could be due to the in vitro experimental conditions of cryo-EM. RyR2 is also regulated by SR luminal Ca²⁺ (reviewed in ^[20]^[21]). Although luminal Ca²⁺ can indirectly activate RyR2 by acting on the cytosolic Ca²⁺-binding site following passage through the pore, a separate site accessible only to luminal Ca²⁺ is likely to exist. Mutagenesis analysis has indicated that residue E4872 within S6 is necessary for luminal Ca²⁺ activation without affecting cytosolic Ca²⁺ modulation ^[25].

3.1. Regulation of RyR2 by Accessory Proteins

RyR2 is also regulated by accessory proteins and post-translational modifications (phosphorylation and oxidation) (reviewed in ^[21]^[26]). Here, researchers focus on three RyR2-associated proteins, FK506-binding protein (FKBP), calmodulin (CaM), and calsequestrin (CSQ2) because of their implication in genetic cardiac disease.

3.1.1. FKBP12/12.6

In native cardiac tissue, both of the two FKBP homologues of 12 and 12.6 kDa are found associated with RyR2 depending on the animal species ^[27]. RyR2 affinity is much greater for FKBP12.6 than FKBP12; however, native RyR2 occupancy by FKBP12.6 is minimal due to the latter being expressed at very low levels ^[27]^[28]^[29]. Functional studies generally suggest that FKBP12.6 promotes RyR2 channel closure and prevents SR Ca²⁺ leak (reviewed in ^[30]). Cryo-EM RyR structures in complex with FKBP12/12.6 indicate that the binding site is composed of multiple determinants contributed by the SPRY1, SPRY3, NTD, and JSol domains ^[22]^[31]^[32]. FKBP12.6 stabilizes RyR2 in a closed state by inducing the relaxation of the CSol and strengthening the NTD-NTD inter-subunit interaction ^[22].

3.1.2. Calmodulin (CaM)

CaM is a high-affinity, Ca²⁺-binding, dumbbell-shaped protein containing four EF-hand motifs, two of each on both N and C lobes. Both the Ca²⁺ free (apo-CaM) and Ca²⁺ bound forms of CaM interact with RyR2 to inhibit channel activity, although inhibition is more pronounced at high Ca²⁺ ^[33]^[34]. The cryo-EM RyR2 structures in complex with apo-CaM and Ca²⁺-CaM indicate that they bind to distinct sites ^[35]. The N-lobe of apo-CaM binds BSolB, whereas its C-lobe binds at the interface between JSol and CSol. Ca²⁺-CaM shifts position and interacts only with the CSol. Ca²⁺-CaM stabilizes RyR2 in a closed state by inducing conformational changes in the CSol to release the pulling force for the dilation of the S6 bundle. Notably, CaM mutations have been linked with arrhythmia and sudden cardiac death, with most cases diagnosed as long QT syndrome and CPVT (reviewed in ^[36]^[37]). Mutations in all three CALM genes, which produce identical CaM peptide sequences, have been reported. Most of the disease-associated CaM mutations studied to date seem to reduce CaM’s inhibitory action on RyR2.

3.1.3. Calsequestrin-2 (CSQ2)

CSQ2 is a low-affinity, high-capacity Ca²⁺-binding protein of ~45 kDa located within the SR lumen, where it buffers the free Ca²⁺ concentration to ~1 mM. It is associated with RyR2 via the SR integral proteins triadin and junctin, as well as directly interacting with the S1S2 luminal loop of RyR2 ^[38]^[39]. It is generally believed that CSQ2 exerts an inhibitory effect on RyR2 Ca²⁺ release (reviewed in ^[40]). CSQ2 knockout mouse models present with stress-induced arrhythmia indicating that CSQ2 plays an important role in the cardiac function ^[41]^[42]. Indeed, CASQ2 is the second most mutated gene in CPVT accounting for ~5% of cases ^[37]. Initially described as the recessive form of CPVT (CPVT2), autosomal dominant mutations have also been reported ^[43]^[44]^[45]. CPVT-linked CSQ2 mutations may result in impaired Ca²⁺ buffering, multimer formation and/or RyR2 regulation ^[37]^[40]^[46].

To summarize, researchers propose a 4-layer model for cytosolic regulation of the RyR2 pore (Figure 2). The first layer directly blanketing the pore consists of the CSol. The second layer consisting of NTD, Jsol, and BSol transmits stimulatory/inhibitory signals to the pore via the CSol. The third layer consists of the SPRY and RY domains acting on the second layer. The final fourth layer consists of cytoplasmic ligands, namely accessory proteins and protein kinases. While small ligands such as Ca²⁺ may have access to the pore-forming region, the large size of proteins precludes them from doing so. The effects of cytoplasmic proteins feed into layers 1/2/3 to alter their conformation and RyR2 inter-domain interactions. For example, FKBP12.6 binding (to SPRY1, SPRY3, NTD, and JSol domains) directly affects layers 2&3, which in turn transmit an allosteric signal to the pore via layer 1. The effect of phosphorylation (mediated by protein kinases) also feeds into layers 1/2/3. S2808 and S2814, whose phosphorylation is implicated in RyR2 physiology and disease are located within RY3&4. The luminal regulation of the RyR2 pore is simpler. The effects of luminal ligands can be direct to the pore (e.g., luminal Ca²⁺) or via the small RyR2 luminal loops.

Figure 2. A schematic representation of the RyR2 3D architecture depicting 4 regulatory layers from the cytoplasmic side. The pore-forming region, comprised of the TMD and CTD, is modulated by the CSol (Layer 1), NTD, JSol and BSol (Layer 2), SPRY1/2/3 and RY1/2/3/4 (Layer 3), and accessory proteins (Layer 4), e.g., FKBP. The colors of regions in the RyR2 3D structure correspond to the colors in the RyR2 sequence in Figure 1.

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