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Agro-Industrial Waste Composting Process Enhancement via Microbial Inoculation
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Composting is an important technology used to treat and convert organic waste into value-added products. Recently, several studies have been done to investigate the effects of microbial supplementation on the composting of agro-industrial waste. According to these studies, microbial inoculation is considered to be one of the suitable methods for enhancing the biotransformation of organic materials during the composting process.

agro-industrial waste composting enhancement single-stage inoculation multiple-stage inoculation bacteria and fungi inoculation
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Update Time: 19 Jan 2022

1. Introduction

The increase in human population indirectly contributes to the increasing demand for various agro-industrial-based products. Currently, the agriculture sector contributed 4% (USD 87.7 billion) of the world’s Gross Domestic Product (GDP) for the year 2019 [1]. The data shown in Table 1 represents the world’s total production and yield of various agro-industrial crops in 2017 and 2018 [2]. It can be observed that the production of agro-industrial crops and the yield of the products harvested are increasing year by year to meet the market demand. Hence, the high production of agro-industrial-based products will subsequently increase the generation of waste and residues. Agro-industry is responsible for the production of various residues related to agricultural and industrial activities [3]. Looking on the bright side of the waste production trend, these potential substrates can be utilized for recycling which will help to promote the sustainability of the agriculture industry. It is notable that, almost 2.0 billion tons/year of agricultural waste are being produced worldwide with an estimated average increase rate of 5 to 10% per annum [4]. Nevertheless, if these residues are discharged into the environment without proper disposal protocol, it may cause great pollution and harmful effects on animal and human health [5]. Therefore, effective management of treating these wastes is important to promote the efforts concerning the development of a sustainable society.
Table 1. World’s total production and yield based on area harvested for various agro-industrial crops in year 2017 to 2020 [2].
  Crop 2017 2018 2019 2020
Area harvested (million ha) Barley 48 48 51.0 51
Cocoa, beans 12 12 12.0 12
Coffee, green 10 11 11 11
Maize 198 195 196 201
Millet 31 32 30 32
Oil palm fruit 27 27 28 28
Oranges 3.8 3.9 3.9 3.8
Rice, paddy 164 165 161 164
Sugar beet 4.9 4.8 4.6 4.4
Sugar cane 26 26 26 26
Wheat 218 214 215 219
Production (million tons) Barley 148 139 158 157
Cocoa, beans 5.2 5.5 5.6 5.6
Coffee, green 9.3 10 10 10
Maize 1138 1124 1141 1162
Millet 29 32 28 30
Oil palm fruit 406 409 415 418
Oranges 73 73 75 75
Rice, paddy 747 759 749 757
Sugar beet 313 273 280 252
Sugar cane 183 193 195 187
Wheat 772 732 765 761
Yield (hg/ha) Barley 31,014 29,243 31,060 30,432
Cocoa, beans 4478 4626 4640 4674
Coffee, green 9022 9756 9069 9679
Maize 57,452 57,542 58,127 57,547
Millet 9212 96,79 9202 9485
Oil palm fruit 150,255 147,556 146,434 145,614
Oranges 188,312 192,285 193,660 194,251
Rice, paddy 45,539 45,795 46,312 46,089
Sugar beet 630,328 571,355 604,012 569,869
Sugar cane 697,722 727,979 726,377 706,434
Wheat 35,377 34,222 35,432 34,744
Among the various waste management systems, composting is considered as the sustainable treatment method for recycling agro-industrial waste into valuable by-products [6]. To date, the production of compost using agro-industrial waste has been extensively used by many researchers due to the availability of cheap and abundant resources [7][8][9]. Agro-industrial waste mainly consists of complex lignocellulosic materials such as cellulose, hemicellulose and lignin. Despite being a suitable method for treating agricultural residues, one of the most common challenges for the composting of this type of waste is the difficulty of decomposing recalcitrant compounds such as cellulose, hemicellulose and lignin. This obstacle affects the productivity of the composting process and the quality of the end product. Moreover, it increases the cost of operations, energy and time in compost production. Various composting strategies had been proposed by researchers aiming to improve the composting process and to produce good quality end-products. This includes monitoring and controlling the key parameters such as C/N ratio, moisture and aeration to provide an optimum condition for composting process. Previous technologies have used pre-treatment methods such as hydrothermal and chemical treatments of the raw materials mainly to break the lignin structure and remove other recalcitrant components before the composting process [10]. However, these pre-treatment methods are not practical, especially for the pilot and industrial scale, due to the high energy and chemical inputs needed. Therefore, finding a safe, sustainable and cost-effective treatment method is necessarily required. Recently, supplementation of microbial inoculant is seen as an attractive solution and there has been growing interest as reported in several studies involving microbial inoculant supplements in the compost pile as a means to enhance productivity and end-product quality of the composting process [11][12][13][14][15].
Various interesting and enlightening studies on the topic of composting of agro-industrial waste, covering the impact of biochar, chemical fertilizer, and mineral amendment have been published and highlighted earlier [16][17]. However, based on the current literature search, limited review articles are describing microbial inoculation, especially for agro-industrial waste composting. The previous study claims that microbial inoculation is less practical than optimizing the physicochemical parameters of the composting process especially for municipal solid waste [7]. However, recent studies have suggested that inoculation of composting with lignocellulosic waste increase the rate of organic matter degradation, temperature, humification, and maturity [7][18][19]. In view of the effectiveness of microbial inoculation for lignocellulose composting, this review aimed to evaluate the state of the latest developments and the understanding of compost supplementation with microorganisms and their roles in the biotransformation of organic materials during the composting process of agro-industrial waste.

2. Microbial Inoculation with Additional Functions as a Means to Enhance the Composting Process

The impacts of microbial inoculation on the composting of various agro-industrial wastes are summarized in Table 2. Previous studies reported that inoculation of microbes into the composting led to improved mineralization [20], accelerated the composting process of OPEFB from 64 days to 50 days [21] and enhanced the compost maturity of rice straw and cattle manure by an increase in total nitrogen, phosphorus and potassium content [22]. The re-inoculation of microbial agents Aeromonas caviae sp. SD3 Shinella sp. XM2, Rhizobium sp. S8 Corynebacterium pseudotuberculosis sp. SD1 and Streptomyces clavuligerus sp. XM which were screened from rice straw compost into the composting pile accelerated the degradation of organic matter and coarse fiber content by 7.58% and 8.82%, respectively due to the enhancement of key enzymes (CMCase, xylanase) and core microbial metabolisms [23]. Moreover, inoculation of a microbial inoculum consisting of Ralstonia sp. (LT703298), Penicillium sp. (LT703297), Penicillium aurantiogriseum (LT703295) and Acremonium alternatum (LT703296), with abilities for cellulose and lignin degradations improved the enzymatic activities of cellulase (15.0 to 19.8%), urease (2.3 to 71.4%), polyphenol oxidase activities (0.3 to 28.4%) and thus, shorten the composting period and improved the maturation rate as compared to the control treatment (uninoculated) in pig manure and apple tree branch composting [24]. Henry et al. [25] reported the addition of effective microbes (EM) in the composting of chicken manure, rice bran and pine waste could enhance the population of thermophiles which consequently improved the composting rate as compared to the control composting. The finding by Wang et al. [9], showed that the inoculation of a bacterial consortia inoculant reduced the C/N, organic matter and moisture, and promotes the enrichment of Bacillus, Sphingobacterium and Saccharomonospora genus, which enhanced the pectin and cellulose degradation during the composting of citrus peel, bran and lime. Furthermore, inoculation of phosphate-solubilizing bacteria into the composting of sugarcane waste enhanced bacterial growth, mainly of the order Lactobacillales, triggering the rise of temperature at the initial phase which promoted the degradation of the lignocellulosic content and consequently enriched phosphorus content at the end of the composting [26].
Table 2. Summary of the impact of microbial inoculation on the agro-industrial waste composting by several works of literature.
Rate of
Impact on the Entire
Composting Process
Mushroom residue Paenibacillus GX 5
Paenibacillus GX 7
Paenibacillus GX 13
Brevibacillus GX 5
Brevibacillus GX 7
Brevibacillus GX 13
2 mL 100 g−1 C/N ratio (12),
(57 °C),
MC (60 to 24%), pH (8)
Improved degradation rate of lignocellulose and organic matter, prolonged thermophilic period, enhanced microbial interaction. [19]
Mushroom residue and wood chips Aspergillus, Penicillium,
Bacillus, Streptomyces
0.2% (w w−1) C/N ratio (22), Temperature (58.4 °C),
MC (50%),
pH (7.8)
Prolonged thermophilic stage, increased degradation efficiency of cellulose and hemicellulose, optimizing the microbial community structure. [18]
Chicken manure and maize straw Strains isolated from natural chicken manure and maize straw compost: Bacillus licheniformis, Bacillus amyloliquefaciens, Ureibacillus thermosphaericus, Bacillus megaterium, Geobacillus pallidus, Bacillus pumilus, Geobacillus sp.
Paracoccus denitrificans
200 mL with 1 × 108 CFU mL−1 cell concentration C/N ratio (21), Temperature (68.4 °C),
MC (55.6 to 42%), pH (8.7)
Increased germination index, NO3 content, prolonged thermophilic stage, reduced volatile solids contents,
improved humification and compost maturity level.
Chicken manure and rice husk Ureibacillus terrenus BE8 and Bacillus tequilensis BG7 5% (v w−1) Total C (263 g kg−1), and Total N (34 g kg−1), Temperature (65 °C), MC (78.1%) Enhanced germination index values, accelerated compost maturity by stimulating different key microbes at the initial stage which promotes better phytotoxicity-free compost than the control treatment. [27]
Pig manure and wheat straw Microbial agent solution consisting of photosynthetic bacteria, actinomycetes, yeasts, and lactic acid bacteria 40 mL 10 kg−1 Total C (41.2 ± 0.5%), Total N (1.79 ± 0.03%), Temperature (68.4 °C), MC (55%) Changes in ARG profiles and bacterial communities have promoted the changes in the potential hosts of ARGs, thus increasing the removal of total ARGs. [28]
Rice straw Compound bacterial agent screened from rice straw composts: Aeromonas caviae sp. SD3 (KR868995.1), Shinella sp. XM2 (CP015736.1),
Rhizobium sp. S8 (KF261556.1),
Corynebacterium pseudotuberculosis sp. SD1 (CP020356.1) and
Streptomyces clavuligerus sp. XM (CP032052.1)
1% (w w–1) with
1 × 109 CFU mL–1 cell concentration
C/N (30), MC (65%) Improved the degradation of organic matter and coarse fiber content by 7.58% and, 8.82% due to the enhancement of core microbial metabolism. [23]
Chicken manure, rice bran and pine waste Bacteria: Bacillus spp., Alicyclobacillus spp., Pseudomonas spp., Lactobacillus spp., Pediococcuss spp., and Actinomycetes. Fungi: Rhizomucor pusillus, Aspergillus spp. 0.2% (w w−1) C/N ratio (28.4), Temperature (65 °C), MC (60 to 40%), pH (8.5) Increased microbial diversity and population, enhanced in composting rate and mineralization. [25]
Rice straw biogas residue and rice straw Aspergillus niger 
CICIMF0410 and
P. chrysosporium AF 96007
1% (v w−1) with
1 × 108 CFU mL−1 cell concentration
C/N ratio (32), Temperature (68.3 °C), MC (60%) Reduced the time required for decomposition of organic matter, removed the toxicity risk for crops and promoted the stability of the compost. [29]
Swine manure and spent mushroom substrate Microbial suspension of lignocellulose-
degrading microorganism’s consortium consisting of Bacillus,Brevibacillus, Paenibacillus and Lysinibacillus genera
10% (v w−1) Mixture ratio (1:1), Temperature
(68 °C), MC (60%), pH (7.6)
Promoted the changes of the bacterial community in the mesophilic phase and reduced the risk of ARGs in the final compost. [30]
Maize straw and canola residue Phanerochaete chrysosporium 1 × 108 CFU mL−1 C/N ratio (25), Temperature
(60 °C), MC (52%), pH (8.17)
Improved lignin degradation during the cooling stage, enhanced compost
River sediment, rice straw, vegetables, and bran Phanerochaete chrysosporium 0.5% (v w−1) C/N ratio (30), Temperature
(69 °C), MC (60%), pH (8.6)
Enhanced the passivation of copper and reduced the effect of pH on the bioavailability of heavy metals. [31]
Dairy manure and sugarcane leaves Thermophilic lignocellulolytic microbes screened from dairy and sugarcane leaves compost samples: Bacillus licheniformis (TA65), Aspergillus nidulans (GXU-1) and Aspergillus oryzae (GXU-11) 2% (w w−1) C/N ratio (30), Temperature
(55 °C),
Improve the mineralization of organic carbon, promoted the lignocellulose degradation and the humification process. [32]
Pig manure and corn stalk Compound bacterium agent comprised of Acinetobacter pittii, Bacillus subtilis sub sp. Stercoris and Bacillus altitudinis 1% (v w−1) with
1 × 109 CFU mL–1 cell concentration
C/N ratio (30), Temperature (67.3 °C), MC (60%), pH (8.8) Prolonged at the thermophilic stage, decreased abundance of human disease-related functional genes, increased the numbers of biomarkers and enhanced the maturity and fertility. [33]
Citrus peel. bran and lime The bacterial consortium which was screened from citrus peel compost samples 3% (w w−1) C/N ratio (25), Temperature
(65 °C), MC
(60%), pH (8.5)
Decreased C/N, organic matter, moisture, pectin and cellulose content, and enhanced the richness and diversity of the bacterial community. [9]
Cattle manure and wheat stalks Bacillus subtilis 0.5% (w w−1) C/N ratio (25),
MC (60%), pH (7.61)
Promoted changes in ARGs and removed a large number of pathogenic bacteria. [34]
Wheat straw, rice, corn and soybean Actinomycetes:
Streptomyces sp. H1 (KX641927.1), Mycobacerium sp. G1 (KY910181.1),
Micromonospora sp. G7 (LC333394.1) and
Saccharomonospora sp. T9 (NR074713.2)
3 mL kg−1 with
1 × 109 CFU mL−1 cell concentration
C/N ratio (30), Temperature
(63 °C), MC (50 to 60%), pH (9.4) and the aeration rates: 0.5 L kg−1 (dry matter)
Improved 34.3% lignocellulose degradation and 8.3% enzyme activity. [35]
Pig manure and apple tree branches Microbial inoculum: Ralstoinia sp., Penicillium sp., Penicillium aurantiogriseum, and Acremonium alternatum 2% (v w−1) C/N ratio (30), Temperature
(77 °C),
MC (60%), pH (8.1)
Enhanced cellulase, urease, and polyphenol oxidase activities and promoted the succession of the bacterial community structure. [24]
Corn straw and dairy
Thermotolerant actinomycetes Streptomyces sp. H1, Streptomyces sp. G1, Streptomyces sp. G2 and Actinobacteria bacterium T9 2% (v w−1) with
1 × 109 CFU mL−1 cell concentration
C/N ratio (30), Temperature
(57 °C), MC (60%)
Enhanced cellulase activities and increased degradation of cellulose, humic substances content. [36]
Food waste and maize straw Cold adapted microbial consortium comprised of stains Pseudomonas fragi (KY283110),
Pseudomonas simiae (KY283111),
Clostridium vincentii (KY283112),
Pseudomonas jessenii (KY283113) and
Iodobacter fluviatilis (KY283114).
1% (v w−1) with
1 × 108 CFU mL−1 cell concentration
C/N ratio (18), Temperature
(45 °C), MC (66%)
Increased organic matter degradation at low temperature and promoted the change of the bacterial community composition and succession. [37]
Dairy manure and rice straw Psychrotrophic-thermophilic complex microbial agent (PTCMA): Bacillus diminuta CB1, Flavobacterium glaciei CB23, Aspergillus niger CF5 and Penicillium commune CF8 10 mL kg−1 with
1 × 108 CFU mL−1 cell concentration
C/N ratio (32),
(63 to 45 °C),
MC (60%), pH (8.2 to 8.4)
Increasing the composting pile temperature and significantly enriched compost
Maturity and proposed
inoculation of PTCMA is an effective approach in cold climates.
Sugarcane industry waste Phosphate-solubilizing bacteria: Pseudomonas
aeruginosa, Bacillus sp., Lactobacillales, Bacillales, Pseudomonas sp., Clostridiales
8 L mg−1 with
1 × 108 CFU mL−1 cell concentration
C/N ratio (30), Temperature
(60 °C)
Enhanced bacterial growth, mainly of the order Lactobacillales, thus causing the heating of the piles during the initial phase and enriched phosphorus content at the end of composting. [26]
Rice straw, soil, vegetables, and bran Phanerochaete chrysosporium 2% (v w–1) with
1 × 106 CFU mL–1 cell concentration
C/N ratio (30), Temperature
(58 °C), MC (60%), pH (8)
Decreased the toxicity of lead and increased the diversity of bacterial community in the composting. [39]
Chicken manure and rice straw Ammonia-oxidizing bacteria 5% (v w−1) with
1 × 106 CFU mL−1 cell concentration
C/N ratio (25), Temperature
(57 °C), MC
(60 to 70%),
pH (7.4)
aeration rate:
0.5 L/min
Decreased ammonia emission and nitrogen loss by transforming ammonium into nitrite and also enhanced the abundance of bacterial community. [40]
Rice straw Cellulase producing
bacteria: Bacillus
licheniformis 1-1v and
Bacillus sonorensis 7-1v
1% (v w−1) with
3.6 and 6.8 × 107 CFU mL−1 cell concentration
C/N ratio (35.8), Temperature
(54 °C), MC (35%), pH (8.1)
Shortened the composting time by 40 to 43%, resulting in a higher decrease in the total organic carbon and C/N ratio and enriched compost quality. [22]
Vegetable waste: cattle manure: sawdust Phanerochaete chrysosporium (MTCC 787) 107 to 108 spores g−1 of compost Compost mixture ratio (5:4), Temperature
(64 °C), MC (65%), pH (7.5)
Enhanced the volatile solids reduction by 1.45-fold in trial 2 (initial phase) and 1.7-fold (thermophilic phase) in trial 3 as compared to uninoculated compost treatment. [41]
Rice straw and goat manure EM: lactic acid bacteria, yeast and phototrophic bacteria. 5% (v w−1) C/N ratio (32.4) Improved the mineralization in composting process. [20]
Wheat straw and cattle manure Ammonium-oxidizing bacteria: Bacillaceae (strain T-AOB-2, M-AOB-4 and MT-AOB, 2-4) 5% (v w−1) with
1 × 108 CFU mL–1 cell concentration
C/N ratio (30), MC (65%) Promote formation of humic substances by reducing total organic carbon and dissolved organic carbon, improving bacterial activity. [42]
Chicken manure, furfural residues and bagasse Exogenous microbes (VT) and indigenous microbes (M3T) 0.5% (v w−1) C/N ratio (30), Temperature
(50 to 58 °C),
MC (55%)
Improved rate of temperature increase, enhanced urease, protease and cellulase activity. [43]
Maize straw and pig manure Bacillus subtilis,
Bacillus licheniformis,
Phanerochaete chrysosporium,
Trichoderma koningii,
Saccharomyces cerevisiae
0.1% (w w−1) C/N ratio (27.7),
(66 °C), MC (60%)
Improved rate of temperature increase, increased micronutrients (N, P, K), enhanced decomposition of
organic carbon, improved germination index.
Wheat straw and dairy manure Microbial agent:
Aspergillus niger, Saccharomyces cerevisiae, Lactobacillus plantarum, Lactobacillus acidophilus, Bacillus megaterium, Streptomyces albogriseusand Bacillus subtilis
0.2% (v w−1) C/N ratio (16), Temperature
(60 °C), MC (60%), pH (8.0)
Increased composting maturity and total organic carbon degradation, decreased abundance of potential
pathogen and improved key bacterial network interaction.
Rice straw and cattle manure Malbranchea cinnamonmea, Gloephyllum
10 mL kg−1 C/N ratio (25), Temperature
(73 °C), MC (65%), pH (8.5)
Promoted cellulose, hemicellulose and lignin degradation, increased nutrients and humus carbon, increased diversity and relative abundance of lignocellulosic fungi. [46]
Rice straw and swine manure Kitasatospora phosalacinea C1, Paenibacillus glycanilyticus X1, Bacillus licheniformis S3, Brevibacillus agri E4 and Phanerochaete chrysosporium Not mentioned C/N ratio (27.5),
(62 °C)
Improved rate of temperature increase, enhanced
maturation level.
Wheat straw and swine manure Gloephyllum trabeum 1 × 108 spores
C/N ratio (27), Temperature
(73 °C), MC (60%)
Shorten maturation period, increased decomposition rate of cellulose, hemicellulose and lignin, influencing fungal community by increasing relative abundance of Aspergillus, Mycothemus and melanocapus. [48]
Another finding by Wan et al. [15] revealed that the addition of a microbial cocktail inoculum consisting of Bacillus licheniformis,Bacillus amyloliquefaciens,Bacillus megaterium, Bacillus pumilus,Geobacillus pallidus, Ureibacillus thermosphaericus and Paracoccus denitrificans which were isolated and cultivated from chicken manure and maize straw compost itself enhanced the thermophilic phase of composting process with maximum temperature reaching 68 °C as compared to the control treatment with only 60.8 °C as the maximum temperature. Due to this, the germination index increases as high temperature reduced the phytotoxicity effect and thus contributed to the better maturity level of the compost [49]. Previously, Zhang et al. [40] reported the inoculation of enriched ammonia-oxidizing bacteria successfully reduced ammonia emission by 53% of total ammonia than uninoculated compost by promoting ammonia transformation into nitrate. The inoculation of combined bacterial agents (Acinetobacter pittii, Bacillus subtilis sub sp. Stercoris and Bacillus altitudinis) influenced the bacterial community succession and prolonged the thermophilic stage of the composting of pig manure and corn stalk by 2 days [33]. The inoculation of these microbes also increased the total phosphorus and showed no plant toxicity at the end of the composting process. Their findings showed that the extended thermophilic period reduced the abundance of human disease-related functional genes which was due to the elimination of a large number of pathogenic bacteria.
Liu et al. [27] reported that the germination index of the chicken manure and rice husk composting reached 80% within 13 days with the addition of microbial inoculants as compared to control which took 21 days to reach this value. The higher GI achieved was attributed to the increase in fluorescence intensity of fulvic acid-like and humic acid-like substances detected, indicating inoculation of microbes promotes the biotransformation of water-extractable organic matter and also the compost maturity. Zhang et al. [50] suggested that compost with more than 80% GI could be considered as matured and phytotoxicity-free. Similarly, inoculation of Phanerochaete chrysosporium at the cooling phase of the composting of maize straw and canola residues showed the higher GI (103.11%) as compared to the control (without inoculation) and inoculation at the initial phase with GI at only 90.65% and 96%, respectively [13].
To date, fungal inoculation had shown its effectiveness for enhancing the composting process. One of the significant and widely used fungi in composting is white-rot fungus Phanerochaete chrysosporium that produces the extracellular enzymes system consisting of manganese peroxidase, lignin peroxidase and laccases for lignocellulose degradation [41]. Huang et al. [39] demonstrated that inoculation with Phanerochaete chrysosporium significantly reduced the toxicity in the composting of lead (Pb)-contaminated rice straw, soil, vegetables and bran. Likewise, via DGGE profile analysis, Phanerochaete chrysosporium showed a positive impact on the bacterial community composition which contributed to the reduction of toxic Pb2+ ions concentration. A study by Chen et al. [31] also showed that the inoculation of Phanerochaete chrysosporium reduced the bioavailability of heavy metals for cadmium, plumbum and zinc, respectively, as compared to non-inoculated composting of agricultural waste and river sediment. This is due to the fact that Phanerochaete chrysosporium promotes the passivation of heavy metals through chelation action by organic humus. It was also found that the inoculation with Phanerochaete chrysosporium showed greater passivation of copper than other heavy metals during the composting process.
Furthermore, the inoculation of Phanerochaete chrysosporium at the initial and thermophilic stages in the co-composting of vegetable waste, cattle manure and sawdust at ratio 5:4:1 promoted the volatile solids reduction by 1.45-fold (initial phase) and 1.7-fold (thermophilic phase) as compared to the uninoculated compost treatment [41]. Wan et al. [15] reported the inoculation of microbial cocktails in the composting pile also improved the reduction of volatile solids from initial content of 44% in both piles to final content of 29.9% for the inoculation and 32.1% for the control treatment. The reduction of the volatile solids was mainly due to the volatilization of ammonia gases during the composting process [51]. Additionally, the combination of Aspergillus niger and Phanerochaete chrysosporium reduced the composting time by improving the degradation rates of hemicellulose, cellulose and lignin by 29.4%, 34.8% and 40.5%, respectively, as compared to the control treatment [29]. Moreover, the inoculation of both fungi promoted the maturity level of compost through the enhancement of humification with higher humic acid content (10.5% to 18.6%) and humification index (1.69 to 2.64) in 30 days of the composting process. Another finding by Xu et al. [32] revealed the degradation rate of cellulose and hemicellulose for inoculated dairy manure-sugarcane leaves composting (27%) was higher than that of the uninoculated composting (22%). Inoculation also promoted the formation of humic substance compost by 11.82% higher than that of the uninoculated one. Hence, Xu et al. [52] concluded that the inoculation of efficient microbes could enhance the metabolism of easily available organic compounds and the organic matter of the composting process. In addition, Wei et al. [35] revealed that the inoculation of actinomycetes in the composting of wheat, rice, corn and soybean straw improved by 34.3% lignocellulose degradation and by 8.3% enzyme activity. These results were in agreement with the studies reported by Zeng et al. [53] which demonstrated that with the inoculation of Phanerochaete chrysosporium during the mesophilic cooling phase of the composting of agricultural wastes (mixture of rice straw, vegetables, rice bran and soil) enhanced the xylanase, manganese peroxidase and lignin peroxidase activity which then increased by 40% lignocellulose degradation ratio. Similarly, thermotolerant cellulolytic actinomycetes (Streptomyces sp. H1, Streptomyces sp. G1, Streptomyces sp. G2 and Actinobacteria bacterium) which were inoculated into different (initial, thermophilic and cooling) stages of composting were reported to enrich cellulase activities, enhance the degradation of cellulose, increase the content of the humic substances and subsequently influence the structure of the actinomycete community in dairy manure-corn straw composting [36].
In general, composting is conducted in an environment with ambient temperatures between 20 °C to 30 °C. However, in cold climates conditions such as winter with temperatures usually lower than 15 °C, it is difficult to operate the composting process due to the slow metabolism of microbes that contributes to the suppression of microbial heat generation in the piles [54]. As a solution, the inoculation of cold-adapted and thermophilic microbial agents consisting of Brevundimonas diminuta CB1, Flavobacterium glaciei CB23, Aspergillus versicolor CF5 and Penicillium commune CF8 successfully increased the temperature at the onset of composting and significantly improved the compost maturity by decreasing the total organic carbon and C/N ratios, as well as promoting the increment of total nitrogen, degradation of cellulose and lignin, and germination index than the control compost [38]. This was in agreement with Xie et al. [37] who showed that the inoculation of a cold-adapted microbial consortium consisting of strains Pseudomonas fragi (KY283110), Pseudomonas simiae (KY283111), Clostridium vincentii (KY283112), Pseudomonas jessenii (KY283113) and Iodobacter fluviatilis (KY283114) significantly enhanced the degradation of organic matter and increased the temperature when the food waste was composted at low ambient temperature (10 °C), contributing to start-up composting in winter or cold regions.
It is also important to highlight that, composting is regarded as an effective method to eliminate antibiotic resistance genes (ARGs) present in the waste especially manure. Manure application has been shown to increase the occurrence and spread of ARG in soils that may enter the food chain via contaminated crops and groundwater, hence, posing a potential risk to human health [55]. As reported by Cao et al. [28] the addition of microbial agents composed of photosynthetic bacteria, actinomycetes, yeasts and lactic acid bacteria in the composting increased the reduction of total ARGs by changing the variations of ARG profiles and the potential hosts of ARGs (bacterial community) which subsequently influences the removal of ARGs. Similarly, the inoculation of 0.5% (w/w) of Bacillus subtilis into the composting of cattle manure and wheat stalks mixture decreased the relative abundances of ARGs, mobile genetic elements and human pathogenic bacteria (by 2 to 3 logs) in the composts [34]. Furthermore, it was reported that the inoculation of microbial suspension of lignocellulose-degrading microorganisms consisting of mainly Bacillus,Brevibacillus, Paenibacillus and Lysinibacillus genera, decreased the total relative abundance of ARGs by 0.08 logs and affected the bacterial community structure in the mesophilic phase, with the inhibitory effect of potential pathogens during the composting of swine manure and spent mushroom substrate as compared to control treatment [30]. Hence, the addition of inoculum could potentially reduce the ARGs, inhibit pathogens, as well as making the final compost products safer.
Although microbial inoculation has demonstrated some outstanding effects on the composting process, the economic feasibility of this technology should be considered so that it could be applied at the pilot or large-scale production levels. Many of the success stories of this technology are mainly based on small-scale production. As far as we know, there is only a study done by Yoshizaki et al. [56], who evaluated the economic viability of composting of an agro-industrial waste, oil palm biomass which is oil palm empty fruit bunch (OPEFB), with sludge containing microbial seeds at the semi-industrial and commercial-scale production in Malaysia. In this study, the palm oil mill effluent (POME) anaerobic sludge from the anaerobic digestor and OPEFB were used as the composting material. Their findings showed that the composting of 11,570 tons of EFB and POME anaerobic sludge produced 579 tons of nitrogen, 151 tons of phosphorus and 761 tons of potassium per year. It was estimated that the produced compost could provide a 32% internal rate of return (IRR) of USD 9.53 million of net present value (NPV) and 2.9 years for the payback period (PBP) of the investment in 10 years. However, the economic analysis of composting with raw POME showed that the IRR, NPV and PBP for 10 years were 8%, USD 0.43 million and 6.5 years, respectively, which is 24% and USD 9.1 million less and 3.6 years longer than that of composting with POME anaerobic sludge. The results indicated that composting with POME anaerobic sludge was more effective as compared to composting with raw POME. The reason might be that the raw POME did not provide enough microbial seeding and nutrient resources, owing to its diverse characteristics. Unlike raw POME, POME anaerobic sludge generated from the anaerobic digester demonstrated higher nutritional and microbial seed contents with consistent characteristics. Therefore, the higher IRR and faster PBP could be due to the enhancement of the composting process through the application of palm oil mill effluent anaerobic sludge consisting of not only nutrients but also various beneficial indigenous microorganisms which reduced the degradation time, from 60 days to 40 days, with acceptable quality and maturity of the composting product [57][58]. The microbial seed present in the POME anaerobic sludge made this material highly applicable and economically viable as no additional microbes and enzymes were required in order to maintain the quality of the product. It is important to note that the supplementation of single or multiple microbes and enzymes would contribute to the additional annual cost of operations and maintenance. Therefore, developing the optimal methods of microbial seeding is required to ensure that this technology is economically viable especially in pilot or industrial-scale production. In addition, several bacterial strains including Citrobacter sidlakii and Bacillus tequilensis with multiple functions such as plant growth promotion, biocontrol and lignocellulose degradation were successfully isolated from the OPFEB-POME anaerobic sludge compost [59]. Therefore, the produced OPFEB-POME anaerobic sludge compost can be a prodigious replacement for mineral fertilizer as it contains not only high nutrient content, but also a beneficial microbe that is good for soil amendments and crop growth. As a result, the cost for feedstock of the composting process and chemical/inorganic fertilizer could be cut down significantly with the application of composts. Yoshizaki et al. [56] also pointed out that the OPEFB-POME anaerobic sludge compost can replace around 3,250 tons of the conventional chemical fertilizer used to fertilize the palm tree in the plantation.


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    Zainudin, M.H.M. Agro-Industrial Waste Composting Process Enhancement via Microbial Inoculation. Encyclopedia. Available online: (accessed on 30 September 2022).
    Zainudin MHM. Agro-Industrial Waste Composting Process Enhancement via Microbial Inoculation. Encyclopedia. Available at: Accessed September 30, 2022.
    Zainudin, Mohd Huzairi Mohd. "Agro-Industrial Waste Composting Process Enhancement via Microbial Inoculation," Encyclopedia, (accessed September 30, 2022).
    Zainudin, M.H.M. (2022, January 19). Agro-Industrial Waste Composting Process Enhancement via Microbial Inoculation. In Encyclopedia.
    Zainudin, Mohd Huzairi Mohd. ''Agro-Industrial Waste Composting Process Enhancement via Microbial Inoculation.'' Encyclopedia. Web. 19 January, 2022.