Table of Contents

    Topic review

    Microbiota-Derived Approach in PDAC Treatment

    Subjects: Oncology
    View times: 24
    Submitted by: Sona Ciernikova


    Most cancer treatment modalities efficient in other malignancies display limited efficacy in pancreatic cancer, and novel therapeutic strategies in a multidisciplinary approach are highly warranted.

    1. Introduction

    Pancreatic ductal adenocarcinoma (PDAC), accounting for about 90% of all pancreatic cancer cases, is expected to become the second leading cause of cancer deaths before 2030  [1]. Since dense desmoplastic stroma represents one of the main factors responsible for the failure of currently applied PDAC treatment, focusing on the tumor microenvironment components might represent an option to overcome the chemoresistance and immune tolerance. Recently, the pancreatic microbiota has been recognized as an integral part of the PDAC microenvironment and the microbial remodeling of the tumor microenvironment towards immune tolerance might be associated with the inefficiency of antitumor immunotherapy. Thus, a microbiota-derived approach should also be taken into account and numerous clinical trials evaluating the effect of the microbiome in pancreatic cancer are currently ongoing (Table 1).

    Table 1. Pancreatic cancer, solid tumors, and the microbiome. The table summarizes the list of ongoing and completed clinical trials dealing with the impact of microbiome on the risk, prognosis, and treatment efficacy in pancreatic cancer and solid tumors (according to

    Study Study Design Disease Purpose Patients (n) Intervention Study Status
    NCT03302637 A prospective, observational, case-control study Pancreatic cancer To determine the relationship of oral and pancreatic microbiome, and their impact on pancreatic cancer risk. 732 16S rRNA gene sequencing assay, extraction of genomic DNA from oral samples Completed-results not posted
    NCT04274972 A prospective, observational, cohort study Pancreatic cancer Qualitative and quantitative analysis of the pancreatic microbiome in patients with PDAC submitted to pancreaticoduodenectomy, sampling the lesion intraoperatively. Estimated enrollment 20 The oral and rectal microbiome samples will be collected preoperatively. The PDAC tissue from the surgical specimen, the intestinal mucosal tissue from the enteric side of the pancreatic anastomosis, and the bile sample will be collected intraoperatively. On the 30th postoperative day, the oral and rectal samples will be repeated. Recruiting
    NCT04189393 A prospective, observational, cohort study Gastrointestinal cancer To assess changes in microbiome composition during surgical treatment quantified as alpha diversity by 16S rRNA sequencing. Estimated enrollment 60 Four types of samples will be collected for microbiome analysis: saliva, feces, intraoperative mucosal swabs, and drain fluid Active, not recruiting
    NCT04193904 An interventional open-label phase I study Pancreatic cancer To assess the safety of MRx0518 in combination with hypofractionated preoperative radiation through the collection of adverse events. Estimated enrollment 15 Drug: MRx0518
    Radiation: hypofractionated preoperative radiation
    NCT04579978 A prospective, observational, cohort study Advanced Solid tumors To investigate relative abundance and composition of immunotherapy response-associated bacterial species in patients with advanced/unresectable or metastatic solid tumors. Estimated enrollment 60 Fecal microbial composition analyzed by 16S rRNA and metagenomic sequencing. Recruiting
    NCT04243720 A prospective, observational, cohort study Solid tumors To assess several outcomes; fecal microbiome changes associated with primary or acquired resistance to immunotherapy given alone or in combination in patients with advanced solid tumors. Estimated enrollment 100 Stool sample will be collected for DNA extraction. Recruiting
    NCT01706393 An interventional,
    randomized study
    Solid tumors To evaluate the effect of probiotics to change the intestinal microbiome in patients undergoing concurrent pelvic/abdominal RT. Estimated enrollment 26 Dietary supplement: probiotics (six probiotic cultures); 2 capsules bid orally for 6 weeks, 1 capsule (500 mg). The subjects will start eating probiotics 1 week prior of radiation therapy. Unknown
    NCT04600154 An interventional,
    randomized study
    Pancreatic cancer To evaluate the effects of MS-20 on gut microbiota and risk/severity of cachexia in patients receiving chemotherapy for pancreatic cancer. Estimated enrollment 40 MS-20 or placebo will be orally administered twice per day in treatment period. Active, not recruiting
    NCT03840460 A prospective observational cohort study Pancreatic cancer
    • To describe the incidence and distribution of biomarkers and identify molecular subtypes in a large, multicenter population of patients with pancreatic cancer or precursor lesions.
    • To identify the molecular predictors of response or toxicity to standard of care anticancer therapies in PDAC/PanNET.
    Estimated enrollment 200 Blood, urine, stool, saliva, bile, and tissue samples from patients undergoing a tissue biopsy or surgery for suspected or known pancreatic cancer will be collected.
    Molecular analyses including miRNA analysis, DNA and RNA sequencing, nanostring, RT-PCR, and immunohistochemistry will be carried out.
    NCT03891979 A pilot study Pancreatic cancer To determine the change in immune activation in pancreatic tumor tissue following treatment with antibiotics and pembrolizumab. 0 Drug: pembrolizumab
    Drug: ciprofloxacin 500 mg PO BID days 1–29
    Drug: metronidazole 500 mg PO TID days 1–29
    Withdrawn (Suspended due to Primary Investigator’s decision)
    NCT04203459 A prospective observational cohort study Pancreatic cancer To study the mechanism of enhancing the antitumor effects of human chimeric antigen receptor T cells on pancreatic cancer by gut microbiota regulation. Estimated enrollment 80 The collected blood and tissue will undergo molecular analyses, including but not limited to, miRNA analysis, DNA and RNA sequencing, nanostring, real-time PCR, and immunohistochemistry. Recruiting
    NCT01562626 An interventional phase I/II study Solid tumors To evaluate the safety and tolerability of APS001F treatment plus 5-FC and maltose. Estimated enrollment 75 Drug: APS001F
    APS001F infusion on days 1, 2, and 3 of each 28-day cycle
    Drug: 5-FC oral doses on days 11–15 and 18–22, each 28-day cycle
    Drug: 10% maltose
    10% maltose infusion will be administered on days 1–5, 8–12, and 15–19, each 28-day cycle
    NCT03637803 An interventional phase I/II study Solid tumors To assess the safety and tolerability of MRx0518 in combination with pembrolizumab through the collection of adverse events. Estimated enrollment 132 Drug: MRx0518
    Drug: pembrolizumab 25 mg/1 mL intravenous solution

    Abbreviations: PDAC, pancreatic ductal adenocarcinoma; rRNA, ribosomal ribonucleic acid; RT, radiation therapy; 5-FC, 5-fluorocytosine; RT-PCR, real-time polymerase chain reaction; miRNA, microRNA; DNA, deoxyribonucleic acid.

    Oral gavage with fluorescently-labeled Enterococcus faecalis or Escherichia coli confirmed that gut bacteria were able to access the pancreas and might affect the pancreatic microenvironment. Amplicon 16S rRNA gene sequencing showed distinct stage-specific gut and pancreatic microbiome in tumor samples, inducing intratumoral immune suppression and PDAC progression. Furthermore, fecal transfer from PDAC-bearing mice contributed to disease progression. According to the results, deficiency in pattern recognition receptor (PRR) signaling slowed PDAC progression [2][3]. Activation of PRRs and TLR ligation by microbial lipopolysaccharides and flagellins in peritumoral milieu might promote tumor microenvironment reprogramming, and accelerate the PDAC tumorigenesis [4]. Moreover, modification of microbiome by oral antibiotic administration induced tumor microenvironment remodeling leading to a reduction in MDSC and an increase in M1 macrophage differentiation and intratumoral CD4+ and CD8+ T cell activation. Together, bacterial ablation enhanced antitumor immunity and increased susceptibility to αPD-1 immunotherapy by upregulating PD-1 expression on effector T cells in a PDAC orthotopic mouse model. Hence, a combination of specific microbiota ablation with checkpoint-directed immunotherapy might represent a potential treatment strategy for PDAC patients [4].

    Gemcitabine is used as a key chemotherapeutic agent in the treatment of PDAC patients, therefore a deeper understanding of the mechanism of resistance would be of particular interest. Expression of the bacterial cytidine deaminase (CDDL) by intratumor Gammaproteobacteria was shown to be responsible for gemcitabine resistance in a mouse model of colorectal cancer due to the ability to metabolize the chemotherapeutic drug gemcitabine (2′,2′-difluorodeoxycytidine) into its inactive form (2′,2′-difluorodeoxyuridine). Moreover, cotreatment with ciprofloxacin has been shown to abrogate gemcitabine resistance. Interestingly, 16S rRNA sequencing of 65 human PDAC tumors identified Gammaproteobacteria (mostly members of Enterobacteriaceae and Pseudomonadaceae), as the most common bacterial taxa representing 51.7% of all reads. Geller et al. suggested the potential role of intrapancreatic microbiota in modulation of tumor resistance to gemcitabine, since cultivation of bacteria from 15 fresh PDAC tumors with colorectal carcinoma cell cultures mediated a complete resistance to a chemotherapeutic agent [5]. Discoveries from PDAC-bearing mice on gemcitabine-treated and nontreated controls revealed the substantial modifications in the gut bacterial composition. The shift towards an inflammation-related bacterial profile with increased Proteobacteria and Verrucomicrobia phylum is assumed to aggravate the pancreatic inflammatory state. Furthermore, bacterial translocation through the bloodstream or direct reflux through the pancreatic ducts might promote immune remodeling of the peritumoral microenvironment [6].

    Re-establishing an effective intestinal ecosystem with a favorable enteric microbiota might increase the efficacy of cancer treatment (Figure 2). Despite the emerging role of the microbiome in PDAC, there is a limited number of controlled trials with a consistent design regarding the potential role of the gut and/or tumor microbiome modulation towards tumor progression or improving the sensitivity to therapeutics.

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    Figure 2. The possible trend of the gut and/or tumor microbiome modulation in PDAC. Precise targeting of microbiota composition might represent a novel approach to improve the therapeutic efficacy and clinical outcome for PDAC patients. Further research and randomized control trials with careful benefit-risk assessment are warranted due to the considerable risks of infection in immunosuppressive cancer patients. Abbreviations: PDAC, pancreatic ductal adenocarcinoma.

    Oral antibiotics lead to an antitumor immune activation and restrained tumor burden in mice models bearing PDAC [7]. Coadministration of the PDAC drug gemcitabine with ciprofloxacin significantly reduced the level of detectable bacteria via in vivo imaging and improved the response to the chemotherapeutic agent in colon mouse models [5]. In addition, bacterial ablation via oral antibiotics was found to be protective in pancreatic tumorigenesis and to augment the sensitivity to immunotherapy [4]. Mohindroo et al. retrospectively analyzed the clinical data of 148 metastatic PDAC patients (135 patients exposed to antibiotics) showing prolonged OS and PFS (progression-free survival) after macrolide consumption longer than 3 days [8]. However, a retrospective single-center cohort study on resectable PDAC patients found that tetracycline treatment was associated with clinically significant decreased PFS and statistically significant worse OS [9]. Recently, the reanalysis of the comparator arm of the MPACT clinical trial (comprising 430 metastatic PDAC patients on antibiotic therapy) demonstrated increased gemcitabine-associated toxicity during and after antibiotic exposure [10].

    2. Discussion

    Numerous studies highlight the positive effects of probiotics and prebiotics on gastrointestinal cancers through the activation of the host’s immune system, maintenance of intestinal barrier integrity, reduction in microbial activity by decreased intestinal pH, as well as inhibition of bacteria involved in the conversion of procarcinogens to carcinogens [11]. Probiotics are described as “mono- or mixed cultures of live microorganisms able to beneficially affect the host by improving the properties of the indigenous flora” [12]. Bacterial translocation is thought to be a possible route of communication between the gut and pancreatic microbiota. Hence, the effects of probiotic modulation in patients with pancreatitis have been evaluated as a risk factor for PDAC development. The first randomized, controlled, and double-blind study in a small cohort of 45 patients with severe acute pancreatitis (SAP) reported a significant reduction in pancreatic sepsis and the number of surgical interventions [13]. However, these results were not able to be reproduced in a second trial [14]. Importantly, the multicenter, randomized, and double-blind versus placebo PROPATRIA study, comprising 296 patients, reported that probiotic prophylaxis did not reduce the risk of infectious complications and was associated with an increased risk of mortality in patients with predicted SAP [15]. Moreover, the result of meta-analysis of six clinical trials found no significant effects of probiotics on the clinical outcomes of patients with SAP [16].

    Fecal microbiota transplantation (FMT) contains a greater quantity of microbiota than commonly used probiotic supplements and may represent a promising trend in overcoming the immunosuppression and resistance to therapy in cancer patients likely to have relatively short survival [17]. Animal studies suggest the protective effect of gut and tumor bacteria in PDAC patients who had survived more than 5 years without evidence of disease (long-term survivors). Mice that received FMT from patients with advanced disease harbored much larger tumors compared to the animals receiving FMT from long-term survivors of PDAC or healthy controls [18]. To evaluate the results from preclinical findings, the first clinical trial on resectable PDAC patients receiving FMT from healthy donors delivered through both colonoscopy and oral pills is in preparation.

    Due to the contribution of microbiota to an enormous variety of metabolic and immunological pathways, the particular composition of patient´s microbiome should be taken into account to achieve the most efficient therapy response. According to recent studies, a combination of chemotherapy and immunotherapy with proper microbiota modulation might improve the efficacy of cancer treatment and outcome for PDAC patients.


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