1. PR-2 and PR-3 Families: β-1,3 Glucanases and Chitinases
β-1,3 glucanases belong to PR-2 family, classified as endonuclease enzymes (E.C.3.2.1.39). They are multifunctional enzymes present in many living beings, including bacteria, fungi and some invertebrate animals and plants. Over the years, four β-glucanases subfamilies have been reported (A, B, C and D). Among these subfamilies, ten β-1,3-glucanases were classified, based on amino acid sequences shared considering similarities and uniqueness
[1]. The β-1,3 glucanase enzyme is one of three β-glucans found in plants (in addition to β-1,4 glucanases and β-1,3-1,4 glucanases)
[2].
Despite being distributed differently among plant organs, glucanases (β-1,3) may play an important role in the physiological systems of plants, including plant growth, seed germination re-production, and fruit ripening
[3][4][5]. β-glucans (cellulose, callose, xyloglucan, vmixed-linked glucan—MLG) are cell wall structures, predominant in almost all vegetables. These structures can be degraded by specific enzymes such as β-glucanases
[6]. Due to their great potential in plant defense participation, β-1,3 glucanases have been extensively studied, isolated and sequenced
[7][8][9][10]. Naturally, β-1,3 glucanase gene expression levels are relatively low, but when a plant–pathogen interaction or elicitors are used, high levels of β-1,3 glucanase can be detected; enzyme accumulation occurs rapidly and consequently hydrolytic activity increases
[7][8].
In a fungal invasion, for example, specifically in fungal cell wall degradation through the action of β-1,3 glucanases (
Figure 1), oligomers are released, namely β1,3/1,6-D-glucan. These released oligomers can be considered elicitor oligosaccharides. The release of these elicitors induces a plant defense response, demonstrating direct antimicrobial activity
[7][8]. Using DNA recombinant technology, a novel β-1,3-glucanase (Gns6) was characterized by functionality. β-1,3-glucanase Gns6 belongs to subfamily A. The gene expression of Gns6 was evaluated at an early stage of rice blast infection, and the involvement of β-1,3-glucanase Gns6 in early plant defense was proved
[1]. In order to evaluate the effect of β-1,3-glucanase on the construction of the fungal cell wall, the phytopathogenic fungus was submitted to Gns6 in an antifungal activity bioassay. The results revealed that the enzyme Gns6 exhibited potent antifungal activity against
Maganaporthe orzyae, which causes blast disease in rice
[1].
Figure 1. Initial plant defense response in plant–pathogen interaction. At first, the pathogen is recognized on the plant cell wall surface. Then, the elicitors activate a signaling network, where defense genes are activated to produce PR proteins that accumulate and act in the degradation of the pathogenic cell (i.e., β-1,3-gluc and chit; the degradation products of these enzymes can also act as elicitors). The oxidative buster mediates the generation of ROS in an attempt to limit the spread of the pathogen. PRs (i.e., β-1,3-glucanases, chitinases, PRXs, PR10 together with Phyx) are able to induce a hypersensitivity response to prevent the spread of the pathogen to other tissues, releasing elicitors that induce the plant’s defense mechanism. PR10, RBPs and RIPs are also produced by the plant, mediating virus infection. NB-LRR and PR10 act together in gene defense induction. PRX, peroxidase; PRs, pathogen-related proteins; Chit, chitinase; ROS, reactive oxygen species; Phyx, phytoalexin; β-1,3-gluc, β-1,3-glucanases; Ethy, ethylene; JA, jasmonic acid; LRR-RLK, leucine-rich repeat receptor-like protein kinase; NB-LRR, nucleotide-binding and leucine-rich repeat; RBPs, RNA-binding proteins; RIPs, ribosome-inactivating proteins.
Plant β-1,3 glucanases can act in synergism with chitinases, catalyzing the cell wall degradation of microorganisms through the process of hydrolysis of β-1,3 glucans and chitin, respectively (
Figure 1). These enzymes are the most studied among the PRs. Furthermore, these enzymes, together with other hydrolases, also participate in the degradation of cell membrane constituents, mainly fungi
[6]. Chitinases are enzymes (E.C. 3.2.1.14) belonging to groups 3, 4, 8, and 11 of the PRs.
Chitinases can also act similarly to chitosanases (induced in plants as a response to pathogenic interaction) and are capable of degrading chitosan, which is present in structural components of the cell wall of some species of fungi, including those of the order Mucorales. Chitinases have efficient action in the degradation of chitin, the second-most abundant structural polysaccharide in nature, found in insect exoskeletons; they are also vital components of the fungal cell wall. Additionally, chitinases can be observed in some plant species in response to the action of phytopathogenic viruses
[11].
Some chitinases identified so far have demonstrated lysozyme activity, which may also act in bacterial cell wall degradation. This may be antibacterial action, demonstrated by the ability to hydrolyze the β-1,4 bonds that are between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan-like heterosaccharides present in the cell wall of prokaryotes
[12]. As mentioned, during pathogen–plant interactions, elicitor molecules are recognized, and just like β-1,3-glucanase, the chitinases can hydrolyze these elicitors, transforming them into eliciting oligosaccharides (
Figure 1). So, the elicitors produced from chitin and β-1,3-glucanase activity can activate a signaling network, where defense genes are activated to produce other PR proteins that accumulate and act in pathogen cell degradation
[7][8][13][14].
Functional analysis has revealed that transgenic plants of
Arabidopsis, overexpressing the endochitinase gene, proved to be resistant to
Xanthomonas campestris pv.
campestris (
Xcc) when compared to wild-type plants. This endochitinase was identified in cabbage plants and showed up-regulation 24 h after infection
Xcc. Gene expression analysis showed high levels of the endochitinase gene when compared to the uninoculated cabbage plant
[15]. The analysis of
Cucumis sativus L. showed the induction of genes encoding chitinase in plant roots during infection by
Fusarium oxysporum f. sp. cucumerinum (Foc)
[16].
An in vitro assay with purified chitinases Chi2 and Chi14 showed that proteins limited Foc growth. In addition, the gene silencing of Chi14, using the technique of virus-induced gene silencing (VIGS), increased the plant’s sensitivity to fungus. Chi2 gene silencing drastically compromised the activation of the jasmonic acid pathway gene, which is a phytohormone important in plant defense signaling. These results corroborate the hypothesis that chitinase (Chi2) may play a key role in plant resistance
[16]. The overexpression of type II chitinase (LcCHI2) in
Leymus chinensis conferred increased hydrolytic activity in transgenic tobacco and corn plants, which have been shown to be more resistant to pathogens and salt stress
[17].
Twenty-six chitinase genes were identified in
Morus notablis plants
[18]. The differential expression of one of these enzymes, MnChi18, leads to an increased defense against
Botrytis cinera. The plant models overexpressing MnChi18 were protected from damage and were shown to be involved in
B. cinera resistance
[18]. Finally, another study showed that the chitinase gene can positively regulate the hypersensitive and defense responses of
Capsicum annuum L. to infection caused by
Colletotrichum acutatum [19].
In summary, both β-1,3-glucanase and chitinase have been shown to play a significant role in plant defense against microbial agents. It is known that β-1,3-glucanases accumulate during pathogen attack and can act in the hydrolysis of the pathogen cell wall. As mentioned above, the substrate for this enzyme, β-1,3-glucans, can be found in several microorganisms
[1]. Faced with the action of β-1,3-glucanases and chitinase enzymes, oligomers are released, which are β1,3/1,6-D-glucano and chitin, respectively. These released oligomers can be called elicitor oligosaccharides. Elicitor release induces a plant defense response. The activity of both enzymes can cause the depolymerization of structural saccharides present in the pathogen wall, degrading it
[20].
2. PR-9 Family: Peroxidases
Together, plant peroxidases, β-1,3-glucanases and chitinases act in the early plant infection stages
[21]. Once the plant has detected pathogen elicitors or abiotic stress, a series of events, such as oxidative burst, takes place in an attempt to protect the plant from damage induced by ROS. Plant ROS production leads to oxidative burst (
Figure 1). This action plays an important role in direct defense by promoting lignification and pathogen intoxication due to ROS accumulation
[21][22][23].
Currently, the peroxidases are classified into two groups, the first of which is nonheme peroxidase, which is found in prokaryotes and eukaryotes (including halo-peroxidases, NADH peroxidases, thiol peroxidases, and alkylhydro-peroxidase). The second group, heme-peroxidases, is composed of two superfamilies: (1) the peroxidase-cyclooxygenase superfamily (PCOXS) and (2) the peroxidase-catalase superfamily (PCATS). The PCOXS representatives are known as the animal-peroxidase superfamily, while the PCATS are commonly called the nonanimal heme peroxidases
[24][25]. Nowadays, three classes are found in the nonanimal peroxidases: class I (ascorbate peroxidase, yeast cytochrome and bacterial catalase peroxidases), class II (heme peroxidase, includes lignin peroxidase, manganese peroxidase and versatile peroxidase) and class III (found in plants). The class III peroxidases correspond to about 70% of plant-derived peroxidases
[25]. Plant peroxidases (POX, EC 1.11.1.7) are antioxidant enzymes, belonging to group 9 of the PRs (PR-9)
[26].
Plant peroxidases have an important role in plant physiology (
Figure 1), including lignification and wound healing; these enzymes can also participate in the regulation of cell elongation
[27]. Peroxidases play a plant defense role against pathogens. Besides participating in cell signaling after infection, peroxidases can polymerize macromolecules which, after being deposited on the extracellular surface, can promote cell wall strengthening and thus make pathogen invasion more difficult. Peroxidases can also induce the oxidative degradation of phenolic compounds in the cell rupture region caused by pathogens in the first infection stages
[27]. Along with two other oxidizing enzyme families (unrelated), the laccases (LACs) and the polyphenol oxidases (PPOs) family, the PRXs make up the phenoloxidases. PRXs can oxidize substrates, including some phenols, through the reduction of H
2O
2 or organic peroxides
[27][28][29]. Some phenols can generate oxygen radicals, which can be extremely reactive and harmful to the plant. PRXs and other phenoloxidases play a protective role, leading to the oxidative degradation of some phenol forms at the site of infection
[29]. Thus, the use of plant peroxidases arouses great industrial interest as potential biodegradable agents. PRX from plants can degrade residual phenols in water, from industrial wastewater
[30][31][32].
Diverse isoforms of the peroxidase family are found throughout the plant and are capable of oxidizing numerous molecules. POXs are involved in many biological activities (
Figure 1), such as cellular detoxification and the elimination of ROS (including
1 O
2, singlet oxygen; O
2•−, superoxide anion; H
2O
2, hydrogen peroxide; and OH
•, hydroxyl radical). Peroxidases are important enzymes for maintaining the redox homeostasis of plant cells
[33].
In addition, in the first moment of plant stress, ROS are produced to protect the plant from oxidative stress, since the oxidative burst can be lethal to the plant. The balance between antioxidant (AOX) and ROS production is necessary for plant normality. Plant detoxification is also needed, and this can be through peroxidase and other enzymes, such as catalase, superoxide dismutase, etc.
[34]. An imbalance between AOX and ROS, either due to AOX depletion or ROS excess, can prolong oxidative stress, which can compromise the production of lipids, amino acids, proteins, nucleotide acid and pigments
[35]. The remaining oxidative stress also causes cellular damage, leading to membrane injury, organelle function losses, reduced metabolic efficiency, reduced carbon fixation, electrolyte leakage, and chromatid breaks and mutation. All this damage can lead to growth reduction, yield loss and cell death. Peroxidase action is essential for maintaining cellular balance
[35].
Both peroxidase and NADPH oxidase, present in the plant cell wall, play an important role in the apoplastic oxidative burst after microbial attack against plants. In
Arabidopsis, after interaction with the fungus
Alternaria brassicola, cell wall peroxidases (named PRX33 and PRX34) and NADPH oxidase mediated the oxidative burst in the plant. These enzymes are considered to be the main catalyst of the oxidative burst process
[36]. A characterization study also demonstrated that the
Arabidopsis mutant prx34 can reduce ROS and callose accumulation after Flg22-elicitor treatment. These results corroborate other findings, showing that the PRX34 enzyme could be an important component for plant disease resistance
[37].
Another work overexpressed a peroxidase (swpa4) gene, and the stress-related functions of these enzymes in
Ipomoea batatas L. were evaluated. The results indicated that swapa4 gene overexpression can protect the plant from damage
[38]. Furthermore, these results suggested that transgenic sweet potato, overexpressing the PRX genes, can respond more efficiently to saline stress
[38]. An in vivo bioassay evaluation, using transgenic
Arabidopsis, showed that lines overexpressing PRX genes (cotton gene
GhPRXIIB) were capable of tolerating and limiting nematode infection
[39].
Some POX enzymes, such as ascorbate peroxidase (APX) and glutathione peroxidase (GPx), can catalyze the conversion of H
2O
2 to H
2O
[40][41]. Many APX isoforms can be found in different subcellular compartments, including chloroplasts, mitochondria, peroxisome and cytosol
[42], and can play an important role in oxidative defense metabolism
[43][44]. Transgenic plants overexpressing glutathione peroxidase (named AtGPXL5) revealed that this enzyme gene can participate in ethylene (ET) biosynthesis and signaling
[45].
After treatment with the ET-precursor (1-aminocyclopropane-1-carboxylic acid—ACC), transgenic plants show glutathione- and thioredoxin-induced activity and other enzymes involved in ROS processing, which suggests the involvement of the AtGPXL5 gene with ethylene signaling and thus also with plant cell defense
[45]. Transgenic plants of
Citrus sinensis, overexpressing the CsPrx25 gene and encoding a class III peroxidase, show ROS homeostasis and increased H
2O
2 levels and consequently a strong hypersensitivity reaction to
Xcc. The results also show that CsPrx25 gene overexpression contributes to the lignification process of the cell wall, increasing plant resistance
[46].
In summary, ROS production increases, such as H
2O
2, and seems to protect the plant against environmental stimulus including pathogens, but can cause significant stress, since ROS accumulation can lead to cellular toxicity. APX and GPx can act in cellular homeostasis under oxidative stress, protecting the plant
[41][47].
3. PR-10 Family: Ribonucleases
As mentioned, the ribonucleases (RNase) are a member of group 10 of PRs. They show approximately 17 kDa and exhibit a hydrophobic core capable of binding a wide variety of ligands. Ribonuclease PR10 has demonstrated ligand ability for low-molecular-mass compounds. The PR-10 hydrophobic cavity can bind with small molecules, and this hydrophobic cavity can be considered as a general feature of such enzymes
[48]. Many studies have reported the protein–ligand interaction of PR-10 proteins, as reviewed by
[48]. These enzymes can bind to steroids, cytokinin, flavonoids and fatty acids, phytoprostanes, phytomelatonin, gibberellic acid and plant metabolites, with molecules involved in flavor production and color. Ribonuclease enzymes can interact with phytohormones in the hormone-mediated signaling process
[48][49].
Homologs share this conserved structure, but function is not a universal characteristic among the members of the group. These enzymes have been identified in different plant species. However, no unique biological function has been assigned to PR-10 proteins. Among the functions assigned to PR-10 are plant growth and development, as well as antioxidation, UV protection, and pathogen defense. An unusual protein was found in rubber trees and presented activity like the PR-10 class. After structural characterization, plant protection against the
Rigidoporus microporus fungus was related to this protein. The structural analysis demonstrated that these proteins can bind with a deoxycholic acid ligand
[50]. Deoxycholic acid is a bile acid (bile acid deoxycholic acid—DCA), which demonstrated action related to plant defense response. DCA can induce defense in
Arabidopsis plants and reduce bacterial proliferation
[51]. It is possible to observe the up-regulation of PR10 enzymes during plant pathogen interaction and/or direct induction after applying external phytohormones, proving the protective action of PR10 during plant–pathogen interaction
[49][52][53]. Additionally, it is possible to observe an increase in PR10 abundance during interactions caused by viruses and fungi
[54][55][56][57][58].
Besides PR-10′s involvement in the signaling pathways of defense genes, ribonucleolytic activity to cleave invading pathogens has been reported (
Figure 1), causing the pathogen’s RNA cleavage
[59]. During pathogen infection, the RNase activity of PR10 proteins can cause a cytotoxic cell impact and inhibit pathogen growth, degrading the pathogen cell
[54][55][56][57][58]. This inhibition occurs mainly through ribonuclease penetration into the pathogen, with PR10 phosphorylation subsequently occurring, and consequently the destruction of pathogenic cell RNAs
[60].
RNase activity can be exhibited by several PR-10 proteins but it is not believed to be a universal characteristic
[61]. RNase activity is required under biotic and abiotic stress, since these proteins are involved in plant HR signalization, in programmed cell death control and/or apoptosis process
[62][63]. Much evidence has been reported on the general activity of PR-10 against different phytopathogens such as fungi, bacteria, and viruses
[48][59]. Additionally, one report indicated the protease inhibitory activity of PR-10 in the root-knot nematode
Meloidogyne incognita [64].
Concerning the PR-10 activity against pathogens, although not well-explained, these enzymes are believed to be related to the endogenous cytokinin (CK) concentrations and CK in negative feedback regulation. These cytokines are involved in plant immunity modulation, acting directly in the plant defense response to many pathogens
[53][59][65].
In addition, PR-10 proteins can interact with plant hormones such as ABA, JA, auxins, ethylene, and SA, which are involved in hormone-mediated signaling to mitigate damage suffered by the plant, caused by biotic and abiotic stress
[59][66]. In plants infected with
Verticillium dahlia, PR10 genes were found to be up-regulated after an expression profile investigation in leaves, roots and stems of strawberry plants
[52]. Once again, the induction of some phytohormones, including ABA, SA, JA, and gibberellic acid, was seen in the early stages of plant–pathogen interaction. In roots, just two hormones were induced, indole acetic acid (IAA) and JA, but in the late stages of infection
[52].
In
Valsa mali fungus, VmP1 is a virulence factor and can interact with PR10 (named MdPR10) in vivo. The MdPR10 gene present in
Malus domestica is a VmP1 target, and when the silencing of the MdPR10 gene occurs, plant susceptibility increases in plants, while gene overexpression decreases the infection, showing the role of MdPR10 in plant defense against
V. mali [67]. Mahmoud et al. (2020)
[68] demonstrated, with exogenous products to induce the plant’s systemic resistance, that after treatment the plants showed increased abundance of PR10 as well as another protein, which is also used as a marker of systemic acquired resistance (SAR), namely, phenylalanine ammonia lyase (PAL). The in vivo results demonstrate antiviral activity against the tomato pathogen Tobacco Mosaic Virus (TMV)
[68].