Encyclopedia
Please note this is a comparison between Version 1 by Jaebong Kim and Version 2 by Lindsay Dong.
Fibroblast growth factors (FGFs) encode a large family of growth factor proteins that activate several intracellular signaling pathways to control diverse physiological functions. The human genome encodes 22 FGFs that share a high sequence and structural homology with those of other vertebrates. FGFs orchestrate diverse biological functions by regulating cellular differentiation, proliferation, and migration. Dysregulated FGF signaling may contribute to several pathological conditions, including cancer. Notably, FGFs exhibit wide functional diversity among different vertebrates spatiotemporally. A comparative study of FGF receptor ligands and their diverse roles in vertebrates ranging from embryonic development to pathological conditions may expand our understanding of FGF.
- fibroblast growth factors
- diversity
- diseases
1. Introduction
Fibroblast growth factors (FGFs) were first identified in 1973 in bovine pituitary extract [1]. FGFs represent a family of conserved polypeptide mitogens known for their ability to promote proliferation of various cells [2]. FGFs have pleiotropic activities that distinguish this family from other growth factors. Moreover, combined with their proliferation activity, FGFs manifest neurotrophic and angiogenic activities [3][4][3,4] and are involved in developmental events, including differentiation, migration, morphogenesis, and patterning [5]. Abnormal FGF signaling causes various human diseases, such as congenital craniosynostosis, dwarfism syndrome, insulin resistance, obesity, and cancer [6].
FGFs—present in invertebrates and vertebrates—are highly conserved in gene structure and amino acid sequence. Additionally, FGFs are the most diverse group of growth factors in vertebrates; approximately 22 members of FGFs have been identified in vertebrates, with a molecular mass of 17–34 kDa and 13–17% amino acid identity [7]. Most FGF ligands share 28 highly conserved and six identical amino acid residues, implying similarity in the internal core [8]. Based on sequence homology and phylogeny, vertebrate FGFs are subdivided into canonical, hormone-like, and intracellular subfamilies [9]. Members of these subfamilies share high sequence identity and biochemical and developmental properties [10]. Four distinct high affinity receptor tyrosine kinases mediate the effects of FGF signaling [2].
Moreover, diversified FGF signaling requires the precise regulation of FGF activity and receptor specificity. The FGF family is extensively complex [2], and structurally diverse FGF ligands are functionally different [11]. However, a decade-long characterization of the structural and functional diversity within the FGF ligand family has yielded new insights on the differences in the mechanisms of action among members of the FGF family.
2. Gene Organization and Protein Length
Most Fgf genes are dispersed throughout the vertebrate genome. The human and mouse Fgf families comprise 22 members, and the Xenopus Fgf family codes for approximately 19–20 FGFs [7][12][13][7,12,13]. The location of Human Fgf15, mouse Fgf19, Xenopus Fgf15, Fgf17, Fgf18, and Fgf21 has not yet been identified. Moreover, evolutionarily, Fgf15 and Fgf19 are orthologs in vertebrates; human Fgf19 and mouse Fgf15 share 51% amino acid identity, and Xenopus Fgf19 and mouse Fgf15 share 59% identity. Additionally, a few Fgf genes are clustered in the vertebrate genome, including Fgf3, Fgf4, and Fgf19 (Fgf15 in mice), grouped on chromosome 11 in humans and chromosome 7 in mice. However, these clustered associations of Fgfs are common in lower vertebrates, such as Xenopus; Fgf3, and Fgf4, and Fgf19 are closely linked on chromosome 4, and Fgf1, Fgf6, Fgf7, and Fgf23 are grouped on chromosome 3. Notably, Fgf3, Fgf4, and Fgf19 are separated by 30 kb and 45 kb on chromosome 4 in Xenopus; however, this distance reduces to 40 kb and 10 kb in human chromosome 11. In humans and Xenopus, these gene locations indicate a conserved evolutionary pattern conferred by gene and chromosomal duplication and gene translocation. Prototypic Fgfs consist of three coding regions (exons), and this number is relatively conserved in humans, mice, and Xenopus. Exon 1 mainly contains the start codon (ATG); however, there are few Fgfs (Fgf2 and Fgf3) where the sequence initiates from an additional 5′-transcribed sequence upstream of ATG [14][15][14,15]. Additionally, sub-exons are formed in some Fgfs during the splicing process of Exon 1. The gene size of Fgfs varies from <2 kb (in Fgf21) to over 500 kb (in Fgf14). Moreover, unlike other Fgf genes, the Fgf8 exon 1 is subdivided into four small exons in mammals [16] followed by typical exons 2 and 3, reflecting the multifunctionality of the Fgf8 gene. Comparing the genomic sequence of Fgf8 genes from various species reveals that the last three exons are substantially conserved despite the upstream exons being very diverse [16]. Based on the phylogeny chromosomal location (synteny) and homology, the Fgf gene family in humans, mice, and Xenopus can be categorized into seven subfamilies [17], including Fgf1, Fgf4, Fgf7, Fgf8, Fgf9, Fgf11, and Fgf19/15 (Figure 1). Phylogenetic studies suggest potential evolutionary and transformative relationships within the vertebrate gene family. Moreover, studying gene loci on chromosomes allows the evaluation of more precise evolutionary relationships within the Fgf gene family. Lastly, the protein length of FGF is in the range of 126–268 amino acids (aa) in vertebrates, and FGFs in vertebrates are mostly of similar size; therefore, they are predicted to be similarly structured.Figure 1. Evolutionary analysis of FGF proteins in humans, mice, and Xenopus. A circular rooted phylogenetic tree, depicting evolutionary relation between FGF proteins in Homo sapiens (HS), Mus musculus (MM), and Xenopus tropicalis (XT) was determined by using Clustal Omega and visualized by iTOL The evolutionary range among each protein is proportionate to the branch lengths and different subfamilies of FGF proteins are indicated by different color ranges.
3. Structural and Functional Diversity
The molecular weight of FGFs in vertebrates ranges from 17–34 kDa, and the domain structure of FGF protein constitutes an internal core region of approximately 120–140 aa [18] (Figure 2). Within this core region, most FGFs contain a highly conserved sequence of 28 residues and 6 identical amino acids [8]. Among the 28 highly conserved amino acid residues, 10 mediate the interaction of FGFs with their receptors (FGFR) [19]. Moreover, the core region in most FGFs is composed of a cylindrical barrel resulting from the precise folding of 12 antiparallel β-strands. However, FGF1 and FGF2 are exceptions because their structures have a triangular array formed by the typical arrangement of four β-strands [20]. Notably, FGF1 and FGF2—previously known as acidic and basic FGFs—were the first FGFs identified [21]. Sharing 55% homology within their sequence, acidic and basic FGFs have acidic and basic isoelectric points of 5.6 and >9, respectively. FGF1 is a non-glycosylated polypeptide that forms a 17–18 kDa protein (155 aa in length) in most vertebrates [22].
Figure 2. Diagrammatic representation of domain structure of FGF protein. Members of FGF family are classified based on their mode of action. N: amino terminus, SP: signal peptide, NLS: nuclear localization signal, HBS: heparin binding site, SP*: uncleaved bipartite signal sequence, C: carboxyl terminus, SR: serine rich motif.
Additionally, FGF5 (FGF3a in mice) is a precursor polypeptide containing signal and mature peptides of 17 and 251 aa, respectively, in humans. Unlike other FGFs, FGF5 is characterized by two types of glycosylation: N- and O-linked glycosylation. Lastly, FGF5 has been identified in the Xenopus tropicalis genome [23][24].
Furthermore, in the canonical subfamily, FGFs are mainly secreted ligands and are tightly bound to heparin/heparin sulfate (HS) proteoglycans (HSPGs) that regulate their receptor specificity and affinity [24][29]. Members of this subfamily (FGF1, FGF4, FGF7, FGF8, and FGF9) bind to cell surface FGFRs and their cofactor protein HS to form a FGF: FGFR: HS dimer, activating in vertebrates [25][30]. Notably, the FGF1 and FGF2 belong to the FGF1 subfamily.
The four major signaling pathways activated by canonical FGFs include the RAS-MAPK, phosphatidylinositol-4,5-bisphosphate 3-kinase-AKT, phospholipase Cγ/protein kinase C, and signal transducer and activator (STAT) pathways [10]. Additionally, canonical FGFs are key regulators of mesenchymal and epithelial signaling required for organogenesis [26][31].
After binding FGFR, FGF1 crosses the plasma membrane, passes through the cytosol, and reaches the nucleus [27][28][32,33]. Notably, FGF1 is the only FGF that can activate all splice variants of FGFR [10], and nuclear FGF1 possibly controls the cell cycle, cell differentiation, survival, and apoptosis [29][30][34,35].
Phylogenically, the FGF7 subfamily includes FGF3, FGF7, FGF10, and FGF22 [13]. However, some controversies exist regarding the inclusion of FGF3 in this subfamily, as chromosomal synteny supports its inclusion in the FGF4 subfamily [1]. Notably, a recent study has proposed a new subfamily of FGF3 [31][41]. All members of the FGF7 subfamily selectively activate splice variant IIIb of FGFR2; besides this function, FGF3 and FGF10 activate the IIIb variant of FGFR1 [32][33][39,40].
