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Chavez-Galan, L. Flow Cytometry and Respiratory Diseases. Encyclopedia. Available online: (accessed on 20 April 2024).
Chavez-Galan L. Flow Cytometry and Respiratory Diseases. Encyclopedia. Available at: Accessed April 20, 2024.
Chavez-Galan, Leslie. "Flow Cytometry and Respiratory Diseases" Encyclopedia, (accessed April 20, 2024).
Chavez-Galan, L. (2021, January 13). Flow Cytometry and Respiratory Diseases. In Encyclopedia.
Chavez-Galan, Leslie. "Flow Cytometry and Respiratory Diseases." Encyclopedia. Web. 13 January, 2021.
Flow Cytometry and Respiratory Diseases

Flow cytometry (FCM) arises with the design of the cell spectrophotometer, which makes it possible to measure both the content of nucleic acids and the size of the analyzed cells. The subject of the study is not limited to humans, other animal species and bacterias can also be studied. Moreover, FCM allows identify expression of molecules in the membrane, cytoplasm or nucleus, beside soluble proteins (cytokines, chemokines, etc), extracellular vesicles, antibodies, etc.

flow cytometry,experimental design

1. Introduction

Flow cytometry (FCM) arises with the design of the cell spectrophotometer, which makes it possible to measure both the content of nucleic acids and the size of the analyzed cells [1]. The use of FCM in clinical practice required the development of (1) monoclonal antibodies (mAbs), attributed to Cesar Milstein, Georges Köhler and Niels Jerne and, (2) molecules with intrinsic excitation and emission capacity at different wavelengths (fluorophores); since the former is required to be chemically coupled to fluorescent molecules to be detected by FCM [2][3][4].

Currently, the “International Society for Advancement of Cytometry (ISAC)” and the “International Clinical Cytometry Society (ICCS)”, are the institutions that dictate the correct standardization of techniques and equipment for FCM, to generate effective and reproducible results. FCM has established itself as one of the main tools to support the diagnosis and clinical monitoring of diseases since it allows the monitoring of the expression of specific cell markers (Figure 1A).

Figure 1. New generation flow cytometry applications. (A) FCM is a tool widely used in the clinic to support the diagnosis and clinical follow-up of patients. (B) The use of FCM is not limited to humans, its application allows to identify molecules expressed on the surface or intracellular of circulating cells, soluble molecules, signaling pathways, intracellular organelles, genetic material, and even microorganisms. In summary, FCM has allowed important improvements in basic research, as well as established parameters that help to diagnose and monitor various diseases.

2. Basic Systems for the Operation of the Flow Cytometer

The expression “flow cytometry” is composed of the Greek ‘κντοζ (cell)’, ‘μετρον (measurement)’ and from the English word ‘flow’. FCM is a technique that allows evaluating events (commonly cells) in suspension, through the use of mAb coupled to fluorochromes (mAb-F). In FCM, the subject of the study is not limited to humans, since other animal species can also be studied, including bacteria. The use of FCM is diverse, it allows to identify cell’s subpopulation utilizing the expression of molecules in the cell membrane, cytoplasm or nucleus, besides soluble proteins (cytokines, chemokines, growth factors, etc.), extracellular vesicles, antibodies, etc. (Figure 1).

The proper functioning of FCM is the conjunction of six fundamental systems, which involve different areas of science such as fluid physics, optics, electronics, and computing [5] (Figure 2). 

Figure 2. Fundamental systems in flow cytometers. For the proper functioning of the flow cytometer, six basic systems are required: (A) fluid system, (B) source of light emission, (C) optical system, (D) electronic system, (E) informatic system, and (F) analysis system.

3. Basic Considerations to Perform Flow Cytometry

To date, more than 400 mAbs have been standardized and approved for use in research and clinical diagnosis in human leukocytes. When considering FCM as a work tool, we must start from basic questions to establish an adequate experimental design that suits our interests, for example:

  • Related to the object of study: Will cells, soluble components, functional processes (in vitro activation) be evaluated?
  • Related to the staining protocol: What type of sample is it? Do I need to identify surface marks, intracellular, phosphoproteins, etc? Will the acquisition of the samples be immediate or do I need to preserve them?
  • Equipment related: What equipment is available? How many types of lasers do you have attached? What detectors does it have?
  • Related to fluorescence: How much do the emission signals of the selected fluorochromes overlap?
  • Related to the analysis system: What analysis program is available?

It is recommended that for the selection of the fluorochrome that will be coupled to the mAb, the intensity of expression of the molecule to be evaluated is considered; thus, with regard to molecules with abundant expression, it is preferable to use low-bright fluorochromes such as those of the blue laser (488 nm) and red (633 nm), while for molecules with minimal or unknown expression, it is preferable to use bright fluorochromes such as those excited by the violet laser (405 nm) [6]. Another consideration is to avoid selecting those that fluoresce at similar wavelengths, for example, the emission spectrum of fluorochrome called phycoerythrin cyanine 5 spans ~637–705 with a maximum emission at 667 nm; because the fluorochrome called allophycocyanin (APC) emits 660 nm wavelength, the detector for APC can recognize the signal and quantify false positives. 

4. Quality management  in Flow Cytometry

The applications of FCM are aimed at evaluating the expression pattern of molecules in health and disease, based on the biological principle that there are both phenotypic and functional cellular alterations in the immunopathogenesis of disease [7].

Currently, FCM serves as a tool for the diagnosis and clinical monitoring of pathologies of various origins; including oncological, immunodeficiencies or infectious, it is essential not to compromise the obtained results for the proper processing of the samples, for example, it is recommended that peripheral blood samples from patients with sepsis be subjected to bi-hemolysis processes, to avoid problems of specificity of mAb-F [8][9].

5. Use of Flow Cytometry inthe diagnosis of respiratory diseases

The respiratory diseases are the most common causes of death worldwide [10]. The Forum of International Respiratory Societies (FIRS) defines respiratory disease as those that “affect the airway and lungs, impacting lung capacity or gas distribution in our body”, and the five main ones are chronic obstructive pulmonary disease (COPD), asthma, acute lower respiratory tract infections, tuberculosis (TB), and lung cancer (Figure 3).

Techniques such as single-cell RNA sequencing, mass cytometry and FCM have been essential to describe pathophysiological mechanisms and to search for diagnostic markers in respiratory diseases [11]. In the next sections, we have demonstrated the experimental evidence that exists on the importance of using FCM as a tool for monitoring and diagnosing respiratory diseases.

Figure 3

Figure 3. Developments in the diagnosis of respiratory diseases obtained by flow cytometry (FCM). FCM has made it possible to establish parameters for the diagnosis and study of the five main respiratory diseases: (A) chronic obstructive pulmonary disease (COPD), (B) asthma, (C) acute lower respiratory tract infections (AILRT), (D) tuberculosis and (E) lung cancer. Abbreviations: t-SNE, high-dimensional unbiased stoichiometric analysis; PBMC, peripheral mononuclear cells; MBA, microsphere-based antibody assay; mAB-F, Monoclonal antibodies coupled to fluorochromes; GAL-9, Galectine 9; LAP, Latency Associated Peptide; TERT, telomerase reactivity.

6. Advantages and limitations of conventional methods, compared to FCM, in the diagnosis of respiratory diseases

Currently, specialized agencies in public health such as the WHO and the centers for disease control and prevention, establish and approve guidelines for the diagnostic and follow-up of different pathologies, including those of respiratory origin. 

As we discussed above, FCM is a technique that has been showing is useful to improve the diagnosis and monitoring of respiratory diseases, majorly in those pathologies where the conventional technique for diagnostics (provided in the guidelines) has inconvenient like low sensitivity and specificity, highly invasive technique to obtain the tissue sample, expensive, long time to deliver results, among other. The measuring of molecules by FCM usually is implemented in peripheral mononuclear cells or serum, this means; a blood sample is sufficient to develop the quantification of molecules by FCM. Moreover, although this technique requests sophisticated equipment and special capacitation to use it, FCM results are delivered in a short time, and they are relatively easy to interpretive. Finally, flow cytometer is a stable machine that has the potential to implement a point-of-care test.

Guidelines provided by European Respiratory Society (ERS), American Thoracic Society (ATS) and Global Initiative for Chronic Obstructive Lung Disease (GOLD), recommend the use of lung function tests and imaging tests in the diagnosis of respiratory diseases [12]. For instance, spirometry test is relevant for COPD diagnosis, and though it is an excellent tool to support a clinical decision, to have a quality of spirometric measurements is requested a consensus among manufacturers, clinicians, operators, and researchers in order to improve the accuracy and precision of the test [13][14][15].

Methods used to TB diagnosis also show limitations, for instance, culture-based methods need of a long time to deliver the result, and it delays the starting of the treatment, and another test as the tuberculin skin test has a low specificity [16]. Currently, serological and nucleic acid amplification tests are useful to identify influenza or SARS-CoV-2 infection. However, RT-PCR test is expensive, and although it is highly specific and sensitive, there are reports of negative- and positive-false that are majorly associated to the high homology between strains or because the test is detecting non-viable virus or cell debris; whereas, some serological test requests improve its sensibility and specificity [17].

Finally, the biopsy is a method used for lung cancer diagnosis is a highly invasive method to get the tissue sample. Moreover, it should be done by competent personal that request training for a long time.

7. Conclusions

Diseases that affect the respiratory system influence humans to high mortality and morbidity, regardless of age, gender or social status. These conditions are subject to our lifestyle, geographic environment, and climate change.

In the history of humanity, diseases that arise with clinical characteristics of their pathophysiology have been described. Therefore, tools are needed to address the following criteria:

  • Quick and specific diagnosis.
  • Identification of clinical phases.
  • Follow-up biomarkers to evaluate adequate response to treatments.
  • Cost-benefit ratio.

Within the current clinical evaluation tools, special attention has been paid to the specificity and sensitivity for the diagnosis and follow-up of diseases offered by FCM. Since its inception, it has emerged as a tool for rapid and individualized interrogation of suspended events. Through continuous improvement in the basic principles of fluorochrome excitation and emission, monoclonal antibody production, and data analysis systems, today's cytometrists have been equipped with powerful tools to extend our knowledge of biological systems.


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