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1 Yu Peng -- 164 2026-09-27 16:45:58

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Peng, Y. Genome Architecture. Encyclopedia. Available online: https://encyclopedia.pub/entry/60542 (accessed on 29 September 2026).
Peng Y. Genome Architecture. Encyclopedia. Available at: https://encyclopedia.pub/entry/60542. Accessed September 29, 2026.
Peng, Yu. "Genome Architecture" Encyclopedia, https://encyclopedia.pub/entry/60542 (accessed September 29, 2026).
Peng, Y. (2026, September 27). Genome Architecture. In Encyclopedia. https://encyclopedia.pub/entry/60542
Peng, Yu. "Genome Architecture." Encyclopedia. Web. 27 September, 2026.
Genome Architecture
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Genome architecture is the multiscale spatial organization of genomic DNA and chromatin within the cell nucleus, encompassing the physical arrangement, folding, and interaction patterns through which chromosomes occupy three-dimensional nuclear space. In eukaryotic cells, this organization comprises nested structural levels that include nucleosome-associated chromatin, chromatin loops, topologically associating domains, larger chromatin compartments, and chromosome territories [1][2][3]. Genome architecture is characterized by non-random contact frequencies among genomic regions and by dynamic transitions in chromatin configuration that occur while the underlying DNA sequence remains spatially organized within the nucleus [1][2]. Architectural organization is generated and maintained through the physical properties of chromatin together with molecular processes involving structural proteins such as cohesin and CTCF, chromatin-associated factors, transcriptional machinery, and epigenetic states [2][3][4]. The concept therefore covers the three-dimensional topology, hierarchical folding, spatial positioning, interaction domains, and dynamic conformational organization of the genome as a chromatin-based molecular system [3][4].

3D genome chromatin organization chromatin loops topologically associating domains

References

  1. Erez Lieberman-Aiden; Nynke L. van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R. Lajoie; Peter J. Sabo; Michael O. Dorschner; Richard Sandstrom; Bradley Bernstein; M. A. Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A. Mirny; Eric S. Lander; Job Dekker; Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome. Science 2009, 326, 289-293. [CrossRef]
  2. Jesse R. Dixon; Siddarth Selvaraj; Feng Yue; Audrey Kim; Yan Li; Yin Shen; Ming Hu; Jun S. Liu; Bing Ren; Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions. Nature 2012, 485, 376-380. [CrossRef]
  3. Ana Pombo; Niall Dillon; Three-dimensional Genome Architecture: Players and Mechanisms. Nat. Rev. Mol. Cell Biol. 2015, 16, 245-257. [CrossRef]
  4. Ludvig Lizana; Yuri B. Schwartz; The Scales, Mechanisms, and Dynamics of the Genome Architecture. Sci. Adv. 2024, 10, eadm8167. [CrossRef]
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