The initial step in JA biosynthesis is oxygenation of α-linolenic acid in the C-13 position by lipoxygenase (LOX) (
Figure 1)
[33]. Tomato mutants impaired in TmLOXD (wound-induced 13-lipooxygenase) function were unable to produce JA. Moreover, the significantly increased accumulation of JA as well as enhanced resistance to
B. cinerea in tomato plants overexpressing
LOXD gene was observed
[34]. The fatty acid hyperoxide resulting from α-LeA oxygenation is subsequently dehydrated by allene oxide synthase (AOS) to unstable allene oxide. In the presence of allene oxide cyclase (AOC), allene oxide is transformed into 12-oxo-phytodienoic acid (OPDA) enantiomer, 9S,13S/cis-(+)-OPDA, and it is the last step of JA biosynthesis that takes place in chloroplasts (
Figure 1)
[2]. The role of AOC in JA-dependent response to necrotrophic infection was confirmed in the
Oryza sativa–
Magnaporthe oryzae pathosystem, in which the rice mutants impaired in AOC production showed reduced production of JA and increased susceptibility to the pathogen
[35]. In peroxisomes, cis (+)-OPDA is further converted into (+)-7-iso-JA by 12-oxo-phytodienoic acid reductase (OPR) and three β-oxidation steps involving acyl-CoA oxidase (ACX) and l-3-ketoacyl-CoA thiolase (KAT) (
Figure 1)
[1][2]. Tomato plants with a silenced
OPR3 gene displayed a significant increase in susceptibility to
B. cinerea accompanied by the dramatically decreased production of both OPDA and JA-Ile
[36]. Consequently, in double
opr7/opr8 maize (
Zea mays) mutants, the reduced biosynthesis of JA as well as a diminished resistance to oomycete
Pythium aristoporum, was observed
[37].
In the next step of JA biosynthesis in cytosol, (+)-7-iso-JA may be subsequently conjugated with an amino acid by JAR1 (JASMONATE RESISTANT1) synthase, which is able to bind amino acids exclusively to jasmonic acid molecule (
Figure 1)
[38]. Different members of JAR family may synthetize rather rarely the JA conjugates with different amino acids such as valine (Val), leucine (Leu) and phenylalanine (Phe)
[30]; however, the most biologically substantial conjugate JA-Ile is provided by JAR1
[39]. The Arabidopsis
jar1 mutant showed increased susceptibility to both the
S. sclerotiorum strain deprived of
Sclerotinia sclerotiorum integrin-like (SSITL) protein suppressing host resistance as well as to the wild type
B. cinerea isolate
[40]. Accordingly, in rice plants challenged with
Magnaporthe grisea infection, a gradual increase in expression of
OsJAR1, but not the
OsJAR2 gene, was observed from 48 to 72 hpi. Simultaneously, the elevated
OsJAR1 expression was accompanied by induction of endogenous JA-Ile, but not JA-Phe levels, within the same time period
[41]. In agreement with the above findings, the content of (+)-7-iso-JA-Ile was found to be significantly elevated in wheat Fhb1 plants inoculated with
F. graminearum in comparison to mock-inoculated plants
[42], providing yet more evidence for the JA-Ile as a crucial jasmonate in defense against necrotrophic fungi. Metabolite profiling studies of Arabidopsis plants infected with
B. cinerea showed the maximum peak of JA-Ile accumulation at 3 days post-inoculation (dpi)
[43]. The intensity and duration of JA responses are controlled to a large degree by the precise balance between biosynthesis and catabolism of JA-Ile. It was demonstrated that
CYP94B3,
CYP94C1 and
CYP94B1 genes, the members of Cyt P450 family, play a key role in JA-Ile catabolic inactivation
[44][45][46][47]. These genes encode JA-Ile 12-hydroxylase, which is an enzyme catalyzing the conversion of JA-Ile to biologically inactive hydroxylated forms. The disease symptoms in
B. cinerea-infected Arabidopsis lines overexpressing
CYP94B3 and
CYP94C1 genes (B3-OE and C1-OE, respectively) were much stronger in comparison to wild type plants. Moreover, the expression levels of JA defense cascade marker genes,
PDF1.2 and
PR4, were strongly impaired in infected OE lines. These findings clearly indicate that CYP94B3 and CYP94C1 are integral components of the fungus-induced metabolic pathway controlling the abundance of JA-Ile
[43]. In general, JA and its precursors contents increase in plant cultivar resistant to necrotrophic fungi more than in susceptible ones.
2. JA Biosynthesis Genes Induced in Response to Necrotrophic Fungi Infection
The need for accumulation of JA levels effective for signal transduction in response to pathogen infection compel host plants into reprogramming the transcriptional activity of JA-biosynthesis genes. Accordingly, numerous transcriptomic surveys confirmed that genes encoding enzymes involved in JA biosynthesis are induced upon necrotrophic fungi infection, suggesting the direct and pathogen-responsive transcriptomic regulation of JA abundance in planta.
2.1. Phospholipase (PL) Genes
As mentioned above, the primary role of A1 family phospholipases is releasing α-linolenic acid for further JA biosynthesis; although possible, this seems to be uncertain in the case of response to necrotrophic fungi infection. However, deep transcriptome sequencing experiments revealed the significant up-regulation of
PLA1 genes upon pathogen attack, the involvement of yet another
PLs gene has to be considered in at least JA biosynthesis regulation. In Arabidopsis plants infected with
B. cinerea, the induction of
A1 as well as
Dγ1 phospholipase genes (observed at 18 hpi), was preceded by the up-regulation of
PLA2 gene (12 hpi), whereby the elevated levels of all these genes transcripts were detectable also at 24 hpi
[58]. In earlier research on the same pathosystem, no significant up-regulation of
A1 family phospholipase genes has been observed. However, induction of
A2α, Dγ1 and
Dδ1 phospholipases encoding genes at 18 hpi was revealed, whereas the phospholipase
Dγ2 gene was shown to be down-regulated at that time point
[59]. Moreover, elevated levels of
A2,
A2β,
Dα1 and
Dβ1 phospholipase gene transcripts in
B. cinerea-infected Arabidopsis plants were detected (
Table 1)
[60]. Nevertheless, elevated transcript levels for phospholipase
A1γ and
Dβ1 in wild tomato (
Solanum lycopersicoides) at 24 h after
B. cinerea infection were revealed
[61]. In lettuce (
Lactuca sativa), in plants infected with
B. cinerea, up-regulation of three phospholipase A1 and four phospholipase D (γ1, ζ1, ζ2 and one of unknown isoform) encoding genes were observed at 48 hpi (
Table 1)
[62]. The up-regulation of phospholipase
A1,
Dβ1 and
Dα2 genes was detected in pooled samples of chrysanthemum (
Chrysanthemum morifolium) leaves, collected at five time points between 0 and 72 h after inoculation with
Alternaria tenuissima [63]. Comparison of transcriptomes of resistant (R) and susceptible (S)
Brassica napus lines challenged with
S. sclerotiorum infection revealed significant up-regulation of phospholipase
A2α and
Dζ2 genes in R lines at 48 h post-inoculation (hpi). No significant increase in expression level of
PLA1 genes was observed in this case
[64].
Table 1. Phospholipase (PL) genes encoding different isoforms of PLA and PLD active in various pathosystems.
In light of the above results, it has to be considered that trigger-up of jasmonate biosynthesis upon necrotrophic fungi infection is not exclusively regulated by the phospholipase
A1 family genes and that the role of
A2 and especially the
D family of PLs genes may be underestimated here (
Table 1). This conclusion is consistent with the findings of depleted production of JA and resistance level in
PLDβ1 dysfunctional Arabidopsis mutants, suggesting a role of the
Dβ1 phospholipase gene as a positive regulator of JA biosynthesis in response to
B. cinerea [65].
2.2. Lipoxygenase (LOX) Genes
Plant lipoxygenases are often classified according to a positional specificity for the oxygenation of polyunsaturated fatty acids (PUFAs). Thus, plants produce two classes of lipoxygenases 13-LOX and 9-LOX inserting O2 to C-13 or C-9 position of hydrocarbon backbone of linolenic acid, respectively
[66]. However, only 13-LOXs participate in JA biosynthesis. From six genes encoding lipoxygenases in
A. thaliana, four genes encode LOX2, LOX3, LOX4 and LOX6 enzymes that show 13S-lipoxygenase activity, contain chloroplast signaling peptides, and were proven to function in JA biosynthesis in Arabidopsis
[1][67][68]. Analysis of RNA sequencing-based transcriptomics revealed that Arabidopsis plants challenged with
B. cinerea infection displayed the elevated expression of
LOX2 and
LOX4 genes at 18 hpi compared to control plants
[58][59]. Quite confusingly, in a previous study, the down-regulation of
LOX2 in Arabidopsis plants starting 20 h after inoculation with
B. cinerea was observed; however, the
LOX4 gene was shown to be up-regulated within that time
[60]. The authors speculated that such differences in regulation of the genes belonging to the same pathway may reflect distinct roles of particular
LOX genes in the biosynthesis of JA in response to different stimuli. However,
LOX2 down-regulation was also observed in susceptible
Brassica oleracea inoculated with
A. brassicicola at a later stage of infection (48 hpi)
[69]. In phenotypically resistant
Brassica napus genotypes, when comparing susceptible plants, the
LOX2 gene was found to be up-regulated at 24 h, whereas
LOX3 and
LOX4 genes were up-regulated at 48 h after inoculation with
S. sclerotiorum [64][70][71]. Similarly, expression of
LOX2 and
LOX4 genes was induced in lettuce plants inoculated with
B. cinerea at 48 hpi
[62].
Surprisingly, no significant induction of 13S-lipoxygenase genes was observed neither in cucumber (
Cucumis sativa)
[72] nor in
S. lycopersicoides plants
[61] and
S. lycopersicum fruits
[73] infected with
B. cinerea. However, tomato (
S. lycopersicum) mutants with a dysfunctional 13S-lipoxygenase D (
TomLOXD) gene displayed severely compromised resistance to
B. cinerea. Consistently, the overexpression of
TomLOXD resulted in elevated JA biosynthesis and enhanced resistance to this pathogen
[34]. The above results suggest that in the case of
LOX genes the regulation of their product abundance may be driven by the mechanism different than transcriptional control.
2.3. Allene Oxide Synthase (AOS) and Allene Oxide Cyclase (AOC) Genes
Allene oxide synthase (AOS) catalyzes the synthesis of LOX-produced 9-/13-HPOT (polyunsaturated fatty acids hydroperoxides) to the unstable epoxide, 12,13-EOT (12,13-epoxyoctadecatrienoic acid), which is further cyclized to 12-oxo-phytodienoic acid (OPDA) by allene oxide cyclase (AOC). Similar to LOXs, only 13-AOS functions in JA biosynthesis. Either
13-AOS and
AOC genes encode a plastid-transit peptide, indicating that OPDA synthesis is localized in chloroplast
[67]. In Arabidopsis, a single copy of
AOS gene and four genes of
AOC have been identified
[74][75].
The induction of the
AOS gene in both resistant (R) and susceptible (S)
B. napus genotypes was revealed at 24 h after inoculation with
S. sclerotiorum; however, the higher level of its expression was observed in R genotypes at that time point
[64]. The up-regulation of
AOS gene was also observed in Arabidopsis after inoculation with
B. cinerea (18 hpi)
[59], lettuce plants (48 hpi)
[62], as well as in green and ripe tomato fruits (1 dpi)
[73].
A significant up-regulation of
AOC2 gene was observed in resistant
B. napus genotypes 48 h after inoculation with
S. sclerotiorum [71]. Nevertheless, in most recent studies, no significant differences in
AOC2 expression level were found between R and S genotypes for this pathosystem
[64]. The latter authors, however, observed the enhanced up-regulation of the
AOC3 gene at 24 hpi and the
AOC4 gene at 48 hpi in
B. napus R genotypes when compared to S plants. The up-regulation of
AOC2 and
AOC3 genes was observed in Arabidopsis plants 18 h after inoculation with
B. cinerea [58]. These results are unanimous with previous research on this pathosystem in which the induced expression of
AOC2 and
AOC3 was observed at 8 and 20 hpi, respectively
[60]. However, in the latter experiment, the down-regulation of the
AOC4 gene was observed after 20 hpi, similar to the
LOX2 manner of expression yet inconsistent with the other members of this pathway. Confusingly, no significant changes were found in any of the
AOC gene expressions in Arabidopsis plants tested at 18 h after inoculation with
B. cinerea [59]. Similar to that, no regulation of
AOC genes was detected in tomato (
S. lycopersicum) fruits
[73] and cucumber (
C. sativa) plants
[72] infected with this pathogen. In the latter case, the operation of a signaling pathway alternative to JA-mediated one may be speculated, as none of the genes involved in jasmonate biosynthesis displayed a regulation in infection-triggered manner.
2.4. Oxo-Phytodienoic Acid Reductase (OPR) Genes
The family of oxo-phytodienoic acid (OPDA) reductases (OPRs) comprises at least 3 members in tomato, 6 in Arabidopsis, 6 in pea, 8 in maize and 10 in rice
[76]. As described above, the silencing of the
OPR3 gene in tomato as well as disruption of
OPR7 and
OPR8 genes in maize resulted in decreased production of JA and diminished resistance to necrotrophic fungi
[36][37], supporting the idea that jasmonic acid and not OPDA plays a crucial role in defense to this group of pathogens. The up-regulation of
OPR1 and
OPR3 genes in susceptible and resistant
B. napus genotypes infected with
S. sclerotiorum was observed, with no significant differences in expression levels between the two phenotypic groups
[64].
Quite unexpectedly, no up-regulation of the
OPR3 gene in Arabidopsis upon infection with
B. cinerea was revealed. However, 24 h after the combined challenge with
B. cinerea and herbivore pest
Pieris rapae, the induction of this gene was observed, suggesting that in that case the mechanical wounding stimulus had a bigger effect on JA biosynthesis than of necrotrophic infection alone
[58]. These findings are in accordance with earlier research
[60] that also reported no time-course differences in
OPR genes expression in Arabidopsis plants during
B. cinerea infection. The explanation for such expression observed in the above-mentioned experiments seems unobtainable at the moment, especially as the up-regulation of the
OPR3 gene was -yet revealed in another transcriptomic study in this pathosystem
[59].
The circadian clock, an endogenous time-keeping mechanism, adjusts biological processes of a plant in response to environmental signals, so that they are turned on at optimum times throughout the day
[77][78]. Plant defenses are also rhythmically regulated to be expressed with full strength at the time of maximal susceptibility to infection or to synchronize with the time of the day when a pathogen is most abundant
[79]. Arabidopsis plants show differential susceptibility to
B. cinerea depending on the time of inoculation during the day
[80]. It is speculated that plants can anticipate the timing of pathogen infection by time-specific defense pathway activation and thus maximize the response against a particular pathogen
[81]. Consequently, the susceptibility of Arabidopsis to
B. cinerea decreases after inoculation at early daytime (dawn) compared with night. Moreover, the state of decreased susceptibility persists under permanent light conditions and is disrupted in mutants impaired in circadian clock (CC) function. Moreover, the enhanced susceptibility to this pathogen has been lost in the
jaz6 mutant, suggesting the key role of JA signal transduction via JAZ6 in rhythm-dependent susceptibility of Arabidopsis to
B. cinerea [80]. As yet, the only evidence for the direct molecular interaction between CC and JA-mediated defense components comes from the plant response to bacteria
P. syringae pv.
tomato. As it was revealed, the circadian clock component TIME FOR COFFEE (TIC) rhythmically regulates the JA signaling pathway in Arabidopsis by inhibiting MYC2 protein accumulation and controlling transcriptional repression of COI1 in an evening-phase-specific manner
[81]. In case of temporal variation in susceptibility to necrotrophic fungi, the operation of more complex functional CC network has been suggested, since among the transcription factors that responded more rapidly to infection at subjective dawn than subjective night, the target genes of core clock regulators were shown to be notably abundant
[80]. Moreover, duration of the light period seems to influence not only regulation of plant response to biotic stress factors but also the development of an attacking pathogen
[82][83]. Mustard plants (
B. juncea) grown under different regimes of light periods showed variation not only in leaf size but also in necrosis formation in response to
A. brassicicola. The light period over 16 h restricted leaf development and necrosis spreading
[84]. However, how this phenomenon may be connected to a plant JA-dependent resistant response to
A. brassicicola must be further explored
[84]. Consistently, long day photoperiod enhanced Arabidopsis resistance to
B. cinerea activating JA-dependent defense responses, e.g., expression of
MYC2 gene
[85]. Nevertheless, the JA-dependent influence of circadian clock and photoperiod on defense response to necrotrophic fungi requires further extensive investigations.
4. Conclusions
Negative impact of climatic changes and a growing human population requires harnessing new efficient technologies in agriculture to increase yield of crops and decrease to minimum the loss of yield and incomes due to the disadvantageous influence, among other factors, of pathogenic fungi
[86]. One of the new approaches to create modern agricultural technologies, which fit into ecological trends leading mostly in Europe and North America, is the use of natural plant defense mechanisms against pathogens. Skilled use and/or manipulation of JA biosynthesis and JA-dependent signaling pathways can be a good basis for development of novel ‘green’ compounds that not only stimulate growth of plants but also increase the defense capacity of the whole plant with a long-lasting effect against attacks of various necrotrophic pathogens.
In recent years, many research groups all over the world have worked on JA biosynthesis and signaling in various crop species. However, further investigations should also focus exclusively on the JA-dependent signal transduction pathway and JA-responsive genes activation in plants resistant and susceptible to necrotrophic fungi under not only laboratory conditions but also in the field.