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References

1. Ben-Dor, A.; Shamir, R.; Yakhini, Z. (1999), "Clustering gene expression patterns", Journal of Computational Biology 6 (3–4): 281–297, doi:10.1089/106652799318274, PMID 10582567  https://dx.doi.org/10.1089%2F106652799318274
2. Sharan, R.; Maron-Katz, A.; Shamir, R. (2000), "CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis", Intelligent Systems in Molecular Biology - ISMB 19 (14): 307–316, doi:10.1093/bioinformatics/btg232, PMID 14512350 . Tanay, A.; Sharan, R.; Shamir, R. (2000), "Discovering statistically significant biclusters in gene expression data", Bioinformatics 18 (1): S136–S144, doi:10.1093/bioinformatics/18.suppl_1.S136, PMID 12169541  https://dx.doi.org/10.1093%2Fbioinformatics%2Fbtg232
3. Sharan, R.; Maron-Katz, A.; Shamir, R. (2003), "CLICK and EXPANDER: a system for clustering and visualizing gene expression data", Bioinformatics 19 (14): 1787–1799, doi:10.1093/bioinformatics/btg232, PMID 14512350  https://dx.doi.org/10.1093%2Fbioinformatics%2Fbtg232
4. Ulitsky, Igor; Maron-Katz, Adi; Shavit, Seagull; Sagir, Dorit; Linhart, Chaim; Elkon, Ran; Tanay, Amos; Sharan, Roded et al. (2010), "Expander: From expression microarrays to networks and functions", Nature Protocols 5 (2): 303–22, doi:10.1038/nprot.2009.230, PMID 20134430, https://zenodo.org/record/3426102 
5. Kaplan, Haim; Shamir, Ron (1996), "Pathwidth, Bandwidth, and Completion Problems to Proper Interval Graphs with Small Cliques", SIAM Journal on Computing 25 (3): 540–561, doi:10.1137/S0097539793258143  https://dx.doi.org/10.1137%2FS0097539793258143
6. Kaplan, Haim; Shamir, Ron; Tarjan, Robert E. (1999), "Tractability of Parameterized Completion Problems on Chordal, Strongly Chordal, and Proper Interval Graphs", SIAM Journal on Computing 28 (5): 1906–1922, doi:10.1137/S0097539796303044  https://dx.doi.org/10.1137%2FS0097539796303044
7. Golumbic, M.C.; Kaplan, H.; Shamir, R. (1994), "On the Complexity of DNA Physical Mapping", Advances in Applied Mathematics 15 (3): 251–261, doi:10.1006/aama.1994.1009  https://dx.doi.org/10.1006%2Faama.1994.1009
8. Hartuv, E.; Shamir, R. (2000), "A clustering algorithm based on graph connectivity", Information Processing Letters 76 (4–6): 175–181, doi:10.1016/S0020-0190(00)00142-3  https://dx.doi.org/10.1016%2FS0020-0190%2800%2900142-3
9. Ben-Dor, Amir; Shamir, Ron; Yakhini, Zohar (1999), "Clustering Gene Expression Patterns", Journal of Computational Biology 6 (3–4): 281–97, doi:10.1089/106652799318274, PMID 10582567  https://dx.doi.org/10.1089%2F106652799318274
10. Sharan, R.; Shamir, R. (2000), "CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis", Proceedings ISMB '00 8: 307–316C 
11. Tanay, A.; Sharan, R.; Shamir, R. (2000), "Discovering statistically significant biclusters in gene expression data", Bioinformatics 18 (1): S136–S144, doi:10.1093/bioinformatics/18.suppl_1.S136, PMID 12169541  https://dx.doi.org/10.1093%2Fbioinformatics%2F18.suppl_1.S136
12. Ulitsky, I.; Shamir, R. (2007), "Identification of functional modules using network topology and high-throughput data", BMC Systems Biology 1 (8): 8, doi:10.1186/1752-0509-1-8, PMID 17408515  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1839897
13. Mueller, F.J.; Williams, R.; Kostka, D.; Laurent, L.; Ulitsky, I.; Lu, C.; Rao, M.S.; Shamir, R. et al. (2008), "Regulatory networks define phenotypic classes of human stem cell lines", Nature 455 (7211): 401–405, doi:10.1038/nature07213, PMID 18724358, Bibcode: 2008Natur.455..401M  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2637443
14. Kaplan, H.; Shamir, R.; Tarjan, R.E. (1999), "A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals", SIAM Journal on Computing 29 (3): 880–892, doi:10.1137/s0097539798334207  https://dx.doi.org/10.1137%2Fs0097539798334207
15. Elkon, R.; Linhart, C.; Sharan, R.; Shamir, R.; Shiloh, Y. (2003), "Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells", Genome Research 13 (5): 773–780, doi:10.1101/gr.947203, PMID 12727897  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=430898
16. Linhart, C.; Halperin, Y.; Shamir, R. (2008), "Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets", Genome Research 18 (7): 1180–1189, doi:10.1101/gr.076117.108, PMID 18411406  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2493407
17. Tanay, A.; Regev, A.; Shamir, R. (2005), "Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast", Proceedings of the National Academy of Sciences USA 102 (20): 7203–7208, doi:10.1073/pnas.0502521102, PMID 15883364, Bibcode: 2005PNAS..102.7203T  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1091753
18. Belle, A.; Tanay, A.; Bitincka, L.; Shamir, R.; O'Shea, E.K. (2006), "Quantification of protein half-lives in the budding yeast proteome", Proceedings of the National Academy of Sciences USA 103 (35): 13004–9, doi:10.1073/pnas.0605420103, PMID 16916930, Bibcode: 2006PNAS..10313004B  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1550773
19. RECOMB steering committee, including former member Ron Shamir. Accessed January 12, 2014 http://www.recomb.org/Steering-Committee
20. http://safrabio.cs.tau.ac.il/steering_committee.htm Members of the steering committee of the Edmond J. Safra Center for Bioinformatics
21. Pevzner, Pavel; Shamir, Ron (2011), Bioinformatics for biologists, Cambridge University Press, ISBN 9781107648876 
22. Sharan, Roded; Ideker, Trey; Kelley, Brian; Shamir, Ron; Karp, Richard M. (July 2005). "Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data". Journal of Computational Biology 12 (6): 835–846. doi:10.1089/cmb.2005.12.835. ISSN 1066-5277. PMID 16108720.  https://dx.doi.org/10.1089%2Fcmb.2005.12.835
23. ACM fellow profile, Association for Computing Machinery http://awards.acm.org/award_winners/shamir_3130614.cfm
24. RECOMB award winners. Accessed January 12, 2014 http://www.recomb.org/22470/RECOMB-Awards
25. Landau Prize Winners for 2010 (Hebrew). Accessed January 12, 2014 http://www.pais.co.il/Foundations/Landau/Pages/AwardOfScienceAndResearch-2010.aspx
26. The Raymond and Beverly Sackler Chair in Bioinformatics endowed chairs. Accessed January 12, 2014 http://www.cs.tau.ac.il/endowedchairs.htm
27. Intelligent System for Molecular Biology (ISMB) keynote speakers, ISMB. Accessed January 12, 2014.