Your browser does not fully support modern features. Please upgrade for a smoother experience.
Submitted Successfully!
Thank you for your contribution! You can also upload a video entry or images related to this topic. For video creation, please contact our Academic Video Service.
Version Summary Created by Modification Content Size Created at Operation
1 handwiki Camila Xu -- 1125 2022-11-24 01:47:13

Video Upload Options

We provide professional Academic Video Service to translate complex research into visually appealing presentations. Would you like to try it?
No, upload directly Yes
Cite
If you have any further questions, please contact Encyclopedia Editorial Office.
HandWiki. Computer Atlas of Surface Topology of Proteins. Encyclopedia. Available online: https://encyclopedia.pub/entry/36240 (accessed on 26 September 2026).
HandWiki. Computer Atlas of Surface Topology of Proteins. Encyclopedia. Available at: https://encyclopedia.pub/entry/36240. Accessed September 26, 2026.
HandWiki. "Computer Atlas of Surface Topology of Proteins" Encyclopedia, https://encyclopedia.pub/entry/36240 (accessed September 26, 2026).
HandWiki. (2022, November 24). Computer Atlas of Surface Topology of Proteins. In Encyclopedia. https://encyclopedia.pub/entry/36240
HandWiki. "Computer Atlas of Surface Topology of Proteins." Encyclopedia. Web. 24 November, 2022.
Computer Atlas of Surface Topology of Proteins
Edit
The content is sourced from: https://handwiki.org/wiki/Software:Computer_Atlas_of_Surface_Topology_of_Proteins

Computer Atlas of Surface Topology of Proteins (CASTp) aims to provide comprehensive and detailed quantitative characterization of topographic features of protein, is now updated to version 3.0. 

proteins

References

  1. Tian, Wei; Chen, Chang; Lei, Xue; Zhao, Jieling; Liang, Jie (2018-06-01). "CASTp 3.0: computed atlas of surface topography of proteins". Nucleic Acids Research 46 (W1): W363–W367. doi:10.1093/nar/gky473. ISSN 0305-1048. PMID 29860391.  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=6031066
  2. Dundas, J.; Ouyang, Z.; Tseng, J.; Binkowski, A.; Turpaz, Y.; Liang, J. (2006-07-01). "CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues". Nucleic Acids Research 34 (Web Server): W116–W118. doi:10.1093/nar/gkl282. ISSN 0305-1048. PMID 16844972.  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1538779
  3. Edelsbrunner, Herbert; Facello, Michael; Liang, Jie (November 1998). "On the definition and the construction of pockets in macromolecules". Discrete Applied Mathematics 88 (1–3): 83–102. doi:10.1016/s0166-218x(98)00067-5. ISSN 0166-218X.  https://dx.doi.org/10.1016%2Fs0166-218x%2898%2900067-5
  4. Liang, Jie; Woodward, Clare; Edelsbrunner, Herbert (September 1998). "Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design". Protein Science 7 (9): 1884–1897. doi:10.1002/pro.5560070905. ISSN 0961-8368. PMID 9761470.  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2144175
  5. UniProt Consortium, The (2018-02-07). "UniProt: the universal protein knowledgebase". Nucleic Acids Research 46 (5): 2699. doi:10.1093/nar/gky092. ISSN 0305-1048. PMID 29425356.  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5861450
  6. Velankar, Sameer; Dana, José M.; Jacobsen, Julius; van Ginkel, Glen; Gane, Paul J.; Luo, Jie; Oldfield, Thomas J.; O’Donovan, Claire et al. (2012-11-29). "SIFTS: Structure Integration with Function, Taxonomy and Sequences resource". Nucleic Acids Research 41 (D1): D483–D489. doi:10.1093/nar/gks1258. ISSN 0305-1048. PMID 23203869.  http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3531078
  7. Lee, B.; Richards, F.M. (February 1971). "The interpretation of protein structures: Estimation of static accessibility". Journal of Molecular Biology 55 (3): 379–IN4. doi:10.1016/0022-2836(71)90324-x. ISSN 0022-2836.  https://dx.doi.org/10.1016%2F0022-2836%2871%2990324-x
  8. Connolly, M. (1983-08-19). "Solvent-accessible surfaces of proteins and nucleic acids". Science 221 (4612): 709–713. doi:10.1126/science.6879170. ISSN 0036-8075.  https://dx.doi.org/10.1126%2Fscience.6879170
  9. Characterizing Protein Structures by Surface Mapping - Elaine Ellen Thompson - Google Books. ISBN 9780549688488. https://books.google.com/?id=j42tZNOReg0C&pg=PA4&dq=CASTp#v=onepage&q=CASTp&f=false. Retrieved 2013-09-08. 
More
©Text is available under the terms and conditions of the Creative Commons-Attribution ShareAlike (CC BY-SA) license; additional terms may apply. By using this site, you agree to the Terms and Conditions and Privacy Policy.
Upload a video for this entry
Information
Subjects: Others
Contributor MDPI registered users' name will be linked to their SciProfiles pages. To register with us, please refer to https://encyclopedia.pub/register :
HandWiki
View Times: 747
Entry Collection: HandWiki
Revision: 1 time (View History)
Update Date: 24 Nov 2022
Table of Contents
    Notice
    You are not a member of the advisory board for this topic. If you want to update advisory board member profile, please contact office@encyclopedia.pub.
    OK
    Confirm
    Only members of the Encyclopedia advisory board for this topic are allowed to note entries. Would you like to become an advisory board member of the Encyclopedia?
    Yes
    No
    ${ textCharacter }/${ maxCharacter }
    Submit
    Cancel
    There is no comment~
    ${ textCharacter }/${ maxCharacter }
    Submit
    Cancel
    ${ selectedItem.replyTextCharacter }/${ selectedItem.replyMaxCharacter }
    Submit
    Cancel
    Confirm
    Are you sure to Delete?
    Yes No
    Academic Video Service
    Feedback