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HandWiki. Secondary Treatment. Encyclopedia. Available online: (accessed on 15 June 2024).
HandWiki. Secondary Treatment. Encyclopedia. Available at: Accessed June 15, 2024.
HandWiki. "Secondary Treatment" Encyclopedia, (accessed June 15, 2024).
HandWiki. (2022, November 08). Secondary Treatment. In Encyclopedia.
HandWiki. "Secondary Treatment." Encyclopedia. Web. 08 November, 2022.
Secondary Treatment

Secondary treatment is a treatment process for wastewater (or sewage) to achieve a certain degree of effluent quality by using a sewage treatment plant with physical phase separation to remove settleable solids and a biological process to remove dissolved and suspended organic compounds. After this kind of treatment, the wastewater may be called as secondary-treated wastewater. Secondary treatment is the portion of a sewage treatment sequence removing dissolved and colloidal compounds measured as biochemical oxygen demand (BOD). Secondary treatment is traditionally applied to the liquid portion of sewage after primary treatment has removed settleable solids and floating material. Secondary treatment is typically performed by indigenous, aquatic microorganisms in a managed aerobic habitat. Bacteria and protozoa consume biodegradable soluble organic contaminants (e.g. sugars, fats, and organic short-chain carbon molecules from human waste, food waste, soaps and detergent) while reproducing to form cells of biological solids. Biological oxidation processes are sensitive to temperature and, between 0 °C and 40 °C, the rate of biological reactions increase with temperature. Most surface aerated vessels operate at between 4 °C and 32 °C.

effluent quality colloidal biological process

1. Definitions

1.1. Primary Treatment

Primary treatment of sewage by quiescent settling allows separation of floating material and heavy solids from liquid waste. The remaining liquid usually contains less than half of the original solids content and approximately two-thirds of the BOD in the form of colloids and dissolved organic compounds.[1] Where nearby water bodies can rapidly dilute this liquid waste, primary treated sewage may be discharged so natural biological decomposition oxidizes remaining waste.[2]

The city of San Diego used Pacific Ocean dilution of primary treated effluent into the 21st century.[3]

1.2. Secondary Treatment

The United States Environmental Protection Agency (EPA) defined secondary treatment based on the performance observed at late 20th-century bioreactors treating typical United States municipal sewage.[4] Secondary treated sewage is expected to produce effluent with a monthly average of less than 30 mg/l BOD and less than 30 mg/l suspended solids. Weekly averages may be up to 50 percent higher. A sewage treatment plant providing both primary and secondary treatment is expected to remove at least 85 percent of the BOD and suspended solids from domestic sewage. The EPA regulations describe stabilization ponds as providing treatment equivalent to secondary treatment removing 65 percent of the BOD and suspended solids from incoming sewage and discharging approximately 50 percent higher effluent concentrations than modern bioreactors. The regulations also recognize the difficulty of meeting the specified removal percentages from combined sewers, dilute industrial wastewater, or Infiltration/Inflow.[5]

Where natural waterways are too small to rapidly oxidize primary treated sewage, the liquid may be used to irrigate sewage farms until suburban property values encourage secondary treatment methods requiring less acreage. Glacial sand deposits allowed some northeastern United States cities to use intermittent sand filtration until more compact secondary treatment bioreactors became available.[6]

Biological nutrient removal is regarded by some sanitary engineers as secondary treatment and by others as tertiary treatment. The differentiation may also differ from one country to another.

1.3. Tertiary Treatment

The purpose of tertiary treatment (also called "advanced treatment") is to provide a final treatment stage to further improve the effluent quality before it is discharged to the receiving environment (sea, river, lake, wet lands, ground, etc.). Tertiary treatment may include biological nutrient removal (alternatively, this can be classified as secondary treatment), disinfection and removal of micropollutants, such as environmental persistent pharmaceutical pollutants.

2. Process Upsets

Process upsets are temporary decreases in treatment plant performance caused by significant population change within the secondary treatment ecosystem.[7] Conditions likely to create upsets include for example toxic chemicals and unusually high or low concentrations of organic waste BOD providing food for the bioreactor ecosystem.

2.1. Toxicity

Waste containing biocide concentrations exceeding the secondary treatment ecosystem tolerance level may kill a major fraction of one or more important ecosystem species. BOD reduction normally accomplished by that species temporarily ceases until other species reach a suitable population to utilize that food source, or the original population recovers as biocide concentrations decline.[8]

2.2. Dilution

Waste containing unusually low BOD concentrations may fail to sustain the secondary treatment population required for normal waste concentrations. The reduced population surviving the starvation event may be unable to completely utilize available BOD when waste loads return to normal. Dilution may be caused by addition of large volumes of relatively uncontaminated water such as stormwater runoff into a combined sewer. Smaller sewage treatment plants may experience dilution from cooling water discharges, major plumbing leaks, firefighting, or draining large swimming pools.

A similar problem occurs as BOD concentrations drop when low flow increases waste residence time within the secondary treatment bioreactor. Secondary treatment ecosystems of college communities acclimated to waste loading fluctuations from student work/sleep cycles may have difficulty surviving school vacations. Secondary treatment systems accustomed to routine production cycles of industrial facilities may have difficulty surviving industrial plant shutdown. Populations of species feeding on incoming waste initially decline as concentration of those food sources decrease. Population decline continues as ecosystem predator populations compete for a declining population of lower trophic level organisms.[9]

2.3. Peak Waste Load

High BOD concentrations initially exceed the ability of the secondary treatment ecosystem to utilize available food. Ecosystem populations of aerobic organisms increase until oxygen transfer limitations of the secondary treatment bioreactor are reached. Secondary treatment ecosystem populations may shift toward species with lower oxygen requirements, but failure of those species to use some food sources may produce higher effluent BOD concentrations. More extreme increases in BOD concentrations may drop oxygen concentrations before the secondary treatment ecosystem population can adjust, and cause an abrupt population decrease among important species. Normal BOD removal efficiency will not be restored until populations of aerobic species recover after oxygen concentrations rise to normal.

2.4. Design for Damage Control

Measures creating uniform wastewater loadings tend to reduce the probability of upsets. Fixed-film or attached growth secondary treatment bioreactors are similar to a plug flow reactor model circulating water over surfaces colonized by biofilm, while suspended-growth bioreactors resemble a continuous stirred-tank reactor keeping microorganisms suspended while water is being treated. Secondary treatment bioreactors may be followed by a physical phase separation to remove biological solids from the treated water. Upset duration of fixed film secondary treatment systems may be longer because of the time required to recolonize the treatment surfaces. Suspended growth ecosystems may be restored from a population reservoir. Activated sludge recycle systems provide an integrated reservoir if upset conditions are detected in time for corrective action. Sludge recycle may be temporarily turned off to prevent sludge washout during peak storm flows when dilution keeps BOD concentrations low. Suspended growth activated sludge systems can be operated in a smaller space than fixed-film trickling filter systems that treat the same amount of water; but fixed-film systems are better able to cope with drastic changes in the amount of biological material and can provide higher removal rates for organic material and suspended solids than suspended growth systems.[10]:11–13

Wastewater flow variations may be reduced by limiting stormwater collection by the sewer system, and by requiring industrial facilities to discharge batch process wastes to the sewer over a time interval rather than immediately after creation. Discharge of appropriate organic industrial wastes may be timed to sustain the secondary treatment ecosystem through periods of low residential waste flow.[11] Sewage treatment systems experiencing holiday waste load fluctuations may provide alternative food to sustain secondary treatment ecosystems through periods of reduced use. Small facilities may prepare a solution of soluble sugars. Others may find compatible agricultural wastes, or offer disposal incentives to septic tank pumpers during low use periods.

3. Process Types

A great number of secondary treatment processes exist, see List of wastewater treatment technologies. The main ones are explained below.

3.1. Filter Beds (Oxidizing Beds)

In older plants and those receiving variable loadings, trickling filter beds are used where the settled sewage liquor is spread onto the surface of a bed made up of coke (carbonized coal), limestone chips or specially fabricated plastic media. Such media must have large surface areas to support the biofilms that form. The liquor is typically distributed through perforated spray arms. The distributed liquor trickles through the bed and is collected in drains at the base. These drains also provide a source of air which percolates up through the bed, keeping it aerobic. Biofilms of bacteria, protozoa and fungi form on the media’s surfaces and eat or otherwise reduce the organic content.[10]:12 The filter removes a small percentage of the suspended organic matter, while the majority of the organic matter supports microorganism reproduction and cell growth from the biological oxidation and nitrification taking place in the filter. With this aerobic oxidation and nitrification, the organic solids are converted into biofilm grazed by insect larvae, snails, and worms which help maintain an optimal thickness. Overloading of beds may increase biofilm thickness leading to anaerobic conditions and possible bioclogging of the filter media and ponding on the surface.[12]

3.2. Rotating Biological Contactors

Schematic of a typical rotating biological contactor (RBC). The treated effluent clarifier/settler is not included in the diagram.

Rotating biological contactors (RBCs) are robust mechanical fixed-film secondary treatment systems capable of withstanding surges in organic load. RBCs were first installed in Germany in 1960 and have since been developed and refined into a reliable operating unit. The rotating disks support the growth of bacteria and micro-organisms present in the sewage, which break down and stabilize organic pollutants. To be successful, micro-organisms need both oxygen to live and food to grow. Oxygen is obtained from the atmosphere as the disks rotate. As the micro-organisms grow, they build up on the media until they are sloughed off due to shear forces provided by the rotating discs in the sewage. Effluent from the RBC is then passed through a secondary clarifier where the sloughed biological solids in suspension settle as a sludge.[13]

3.3. Activated Sludge

A generalized schematic of an activated sludge process.

Activated sludge is a common suspended-growth method of secondary treatment. Activated sludge plants encompass a variety of mechanisms and processes using dissolved oxygen to promote growth of biological floc that substantially removes organic material.[10]:12–13 Biological floc is an ecosystem of living biota subsisting on nutrients from the inflowing primary clarifier effluent. These mostly carbonaceous dissolved solids undergo aeration to be broken down and either biologically oxidized to carbon dioxide or converted to additional biological floc of reproducing micro-organisms. Nitrogenous dissolved solids (amino acids, ammonia, etc.) are similarly converted to biological floc or oxidized by the floc to nitrites, nitrates, and, in some processes, to nitrogen gas through denitrification. While denitrification is encouraged in some treatment processes, denitrification often impairs the settling of the floc causing poor quality effluent in many suspended aeration plants. Overflow from the activated sludge mixing chamber is sent to a secondary clarifier where the suspended biological floc settles out while the treated water moves into tertiary treatment or disinfection. Settled floc is returned to the mixing basin to continue growing in primary effluent. Like most ecosystems, population changes among activated sludge biota can reduce treatment efficiency. Nocardia, a floating brown foam sometimes misidentified as sewage fungus, is the best known of many different fungi and protists that can overpopulate the floc and cause process upsets. Elevated concentrations of toxic wastes including pesticides, industrial metal plating waste, or extreme pH, can kill the biota of an activated sludge reactor ecosystem.[14]

Package plants and sequencing batch reactors

One type of system that combines secondary treatment and settlement is the cyclic activated sludge (CASSBR), or sequencing batch reactor (SBR). Typically, activated sludge is mixed with raw incoming sewage, and then mixed and aerated. The settled sludge is run off and re-aerated before a proportion is returned to the headworks.[15]

The disadvantage of the CASSBR process is that it requires a precise control of timing, mixing and aeration. This precision is typically achieved with computer controls linked to sensors. Such a complex, fragile system is unsuited to places where controls may be unreliable, poorly maintained, or where the power supply may be intermittent. Extended aeration package plants use separate basins for aeration and settling, and are somewhat larger than SBR plants with reduced timing sensitivity.[16]

Package plants may be referred to as high charged or low charged. This refers to the way the biological load is processed. In high charged systems, the biological stage is presented with a high organic load and the combined floc and organic material is then oxygenated for a few hours before being charged again with a new load. In the low charged system the biological stage contains a low organic load and is combined with flocculate for longer times.

Membrane bioreactors

Membrane bioreactors (MBR) are activated sludge systems using a membrane liquid-solid phase separation process. The membrane component uses low pressure microfiltration or ultrafiltration membranes and eliminates the need for a secondary clarifier or filtration. The membranes are typically immersed in the aeration tank; however, some applications utilize a separate membrane tank. One of the key benefits of an MBR system is that it effectively overcomes the limitations associated with poor settling of sludge in conventional activated sludge (CAS) processes. The technology permits bioreactor operation with considerably higher mixed liquor suspended solids (MLSS) concentration than CAS systems, which are limited by sludge settling. The process is typically operated at MLSS in the range of 8,000–12,000 mg/L, while CAS are operated in the range of 2,000–3,000 mg/L. The elevated biomass concentration in the MBR process allows for very effective removal of both soluble and particulate biodegradable materials at higher loading rates. Thus increased sludge retention times, usually exceeding 15 days, ensure complete nitrification even in extremely cold weather.

The cost of building and operating an MBR is often higher than conventional methods of sewage treatment. Membrane filters can be blinded with grease or abraded by suspended grit and lack a clarifier's flexibility to pass peak flows. The technology has become increasingly popular for reliably pretreated waste streams and has gained wider acceptance where infiltration and inflow have been controlled, however, and the life-cycle costs have been steadily decreasing. The small footprint of MBR systems, and the high quality effluent produced, make them particularly useful for water reuse applications.[17]

Aerobic granulation

Nereda biomass left and activated sludge after only minutes of settling.

Aerobic granular sludge can be formed by applying specific process conditions that favour slow growing organisms such as PAOs (polyphosphate accumulating organisms) and GAOs (glycogen accumulating organisms). Another key part of granulation is selective wasting whereby slow settling floc-like sludge is discharged as waste sludge and faster settling biomass is retained. This process has been commercialized as Nereda process.[18]

3.4. Surface-Aerated Lagoons or Ponds

A typical surface-aerated basin (using motor-driven floating aerators).

Aerated lagoons are a low technology suspended-growth method of secondary treatment using motor-driven aerators floating on the water surface to increase atmospheric oxygen transfer to the lagoon and to mix the lagoon contents. The floating surface aerators are typically rated to deliver the amount of air equivalent to 1.8 to 2.7 kg O2/kW·h. Aerated lagoons provide less effective mixing than conventional activated sludge systems and do not achieve the same performance level. The basins may range in depth from 1.5 to 5.0 metres. Surface-aerated basins achieve 80 to 90 percent removal of BOD with retention times of 1 to 10 days.[19] Many small municipal sewage systems in the United States (1 million gal./day or less) use aerated lagoons.[20]

3.5. Constructed Wetlands

Primary clarifier effluent was discharged directly to eutrophic natural wetlands for decades before environmental regulations discouraged the practice. Where adequate land is available, stabilization ponds with constructed wetland ecosystems can be built to perform secondary treatment separated from the natural wetlands receiving secondary treated sewage. Constructed wetlands resemble fixed-film systems more than suspended growth systems, because natural mixing is minimal. Constructed wetland design uses plug flow assumptions to compute the residence time required for treatment. Patterns of vegetation growth and solids deposition in wetland ecosystems, however, can create preferential flow pathways which may reduce average residence time.[21] Measurement of wetland treatment efficiency is complicated because most traditional water quality measurements cannot differentiate between sewage pollutants and biological productivity of the wetland. Demonstration of treatment efficiency may require more expensive analyses.[22]

3.6. Emerging Technologies

  • Biological Aerated (or Anoxic) Filter (BAF) or Biofilters combine filtration with biological carbon reduction, nitrification or denitrification. BAF usually includes a reactor filled with a filter media. The media is either in suspension or supported by a gravel layer at the foot of the filter. The dual purpose of this media is to support highly active biomass that is attached to it and to filter suspended solids. Carbon reduction and ammonia conversion occurs in aerobic mode and sometime achieved in a single reactor while nitrate conversion occurs in anoxic mode. BAF is operated either in upflow or downflow configuration depending on design specified by manufacturer.[23]
  • Integrated Fixed-Film Activated Sludge
  • Moving Bed Biofilm Reactors typically requires smaller footprint than suspended-growth systems.[24]


  1. Abbett, p.19-28
  2. Abbett, p.19-20
  3. "Point Loma Wastewater Treatment Plant". City of San Diego. Retrieved 5 January 2015. 
  4. U.S. Environmental Protection Agency (EPA), Washington, D.C. "Secondary Treatment Regulation: Secondary treatment." 40 C.F.R. 133.102 Code of Federal Regulations. 1984-10-16.
  5. EPA (1984). "Secondary Treatment Regulation: Special considerations." 40 C.F.R. 133.103; and "Treatment equivalent to secondary treatment." 40 C.F.R. 133.105
  6. Fair, Geyer & Okun, p.34-1
  7. King, p.703
  8. Hammer, p.308
  9. Metcalf & Eddy, pp.386-395
  10. EPA (2004). "Primer for Municipal Waste water Treatment Systems." Document no. EPA 832-R-04-001.
  11. Hammer, p.301-306
  12. Metcalf & Eddy, pp.533-542
  13. Steel & McGhee, pp.492-493
  14. Metcalf & Eddy, pp.482-533
  15. EPA (1999). "Sequencing Batch Reactors." Wastewater Technology Fact Sheet. Document no. EPA 832-F-99-073.
  16. Hammer, Mark J. (1975). Water and Waste-Water Technology. John Wiley & Sons. pp. 390–391. ISBN 0-471-34726-4. 
  17. EPA. Washington, DC (2007). "Membrane Bioreactors." Wastewater Management Fact Sheet.
  18. Forster, Richard. "Mark van Loosdrecht – Professor at Delft University of Technology". International Water Association. Retrieved 24 April 2016. 
  19. Beychok, M.R. (1971). "Performance of surface-aerated basins". Chemical Engineering Progress Symposium Series 67 (107): 322–339.  Available at CSA Illumina website
  20. Maine Department of Environmental Protection. Augusta, ME. "Aerated Lagoons – Wastewater Treatment." Maine Lagoon Systems Task Force. Accessed 2010-07-11.
  21. Reed, Middlebrooks & Crites, pp.170-201
  22. Franson, Mary Ann Standard Methods for the Examination of Water and Wastewater 14th Edition (1976) American Public Health Association ISBN:0-87553-078-8 pp.89-95&543-544
  23. EPA (July 1983). An Emerging Technology: The Biological Aerated Filter. United States Government Printing Office. 
  24. "Black & Veatch, Inc. leaflet". Archived from the original on October 26, 2010. Retrieved 2015-01-03. .
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