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HandWiki. Compression of Genomic Sequencing Data. Encyclopedia. Available online: https://encyclopedia.pub/entry/33233 (accessed on 26 September 2026).
HandWiki. Compression of Genomic Sequencing Data. Encyclopedia. Available at: https://encyclopedia.pub/entry/33233. Accessed September 26, 2026.
HandWiki. "Compression of Genomic Sequencing Data" Encyclopedia, https://encyclopedia.pub/entry/33233 (accessed September 26, 2026).
HandWiki. (2022, November 07). Compression of Genomic Sequencing Data. In Encyclopedia. https://encyclopedia.pub/entry/33233
HandWiki. "Compression of Genomic Sequencing Data." Encyclopedia. Web. 07 November, 2022.
Compression of Genomic Sequencing Data
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The content is sourced from: https://handwiki.org/wiki/Biology:Compression_of_genomic_sequencing_data

High-throughput sequencing technologies have led to a dramatic decline of genome sequencing costs and to an astonishingly rapid accumulation of genomic data. These technologies are enabling ambitious genome sequencing endeavours, such as the 1000 Genomes Project and 1001 (Arabidopsis thaliana) Genomes Project. The storage and transfer of the tremendous amount of genomic data have become a mainstream problem, motivating the development of high-performance compression tools designed specifically for genomic data. A recent surge of interest in the development of novel algorithms and tools for storing and managing genomic re-sequencing data emphasizes the growing demand for efficient methods for genomic data compression.

genome sequencing sequencing technologies re-sequencing

References

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  2. Nalbantoglu, Ö. U., D. J. Russell, and K. Sayood. 2010. Data compression concepts and algorithms and their applications to bioinformatics. Entropy 12(1): 34-52.
  3. Hosseini, D., Pratas, and A. Pinho. 2016. A survey on data compression methods for biological sequences. Information 7(4):(2016): 56
  4. Brandon, M. C., D. C. Wallace, and P. Baldi. 2009. Data structures and compression algorithms for genomic sequence data. Bioinformatics 25(14): 1731–1738.
  5. Deorowicz, S., and S. Grabowski. 2011. Robust relative compression of genomes with random access. Bioinformatics 27(21): 2979-2986.
  6. Wang, C., and D. Zhang. 2011. A novel compression tool for efficient storage of genome resequencing data. Nucleic Acids Res 39(7): e45.
  7. Pinho, A. J., D. Pratas, and S. P. Garcia. 2012. GReEn: a tool for efficient compression of genome resequencing data. Nucleic Acids Res 40(4): e27.
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  12. Grabowski, S., and S. Deorowicz. 2011. Engineering Relative Compression of Genomes. In Proceedings of CoRR.
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  14. Lan, D., et al. 2021 Genozip: a universal extensible genomic data compressor, Bioinformatics https://doi.org/10.1093/bioinformatics/btab102
  15. CRAM benchmarking http://www.htslib.org/benchmarks/CRAM.html
  16. CRAM format specification (version 3.0) https://samtools.github.io/hts-specs/CRAMv3.pdf
  17. "The Importance of Data Compression in the Field of Genomics" (in en-US). https://pulse.embs.org/march-2019/the-importance-of-data-compression-in-the-field-of-genomics/. 
  18. "ISO/IEC 23092-2:2019 Information technology — Genomic information representation — Part 2: Coding of genomic information" (in en-US). https://www.iso.org/standard/73536.html. 
  19. "An introduction to MPEG-G, the new ISO standard for genomic information representation". https://www.biorxiv.org/content/10.1101/426353v1/. 
  20. "ISO/IEC 23092-2:2019 Information technology — Genomic information representation — Part 2: Coding of genomic information" (in en-US). https://www.iso.org/standard/73536.html. 
  21. "An introduction to MPEG-G, the new ISO standard for genomic information representation". https://www.biorxiv.org/content/10.1101/426353v2/. 
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