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HandWiki. Smiles Arbitrary Target Specification. Encyclopedia. Available online: https://encyclopedia.pub/entry/32006 (accessed on 15 October 2026).
HandWiki. Smiles Arbitrary Target Specification. Encyclopedia. Available at: https://encyclopedia.pub/entry/32006. Accessed October 15, 2026.
HandWiki. "Smiles Arbitrary Target Specification" Encyclopedia, https://encyclopedia.pub/entry/32006 (accessed October 15, 2026).
HandWiki. (2022, October 31). Smiles Arbitrary Target Specification. In Encyclopedia. https://encyclopedia.pub/entry/32006
HandWiki. "Smiles Arbitrary Target Specification." Encyclopedia. Web. 31 October, 2022.
Smiles Arbitrary Target Specification
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SMiles ARbitrary Target Specification (SMARTS) is a language for specifying substructural patterns in molecules. The SMARTS line notation is expressive and allows extremely precise and transparent substructural specification and atom typing. SMARTS is related to the SMILES line notation that is used to encode molecular structures and like SMILES was originally developed by David Weininger and colleagues at Daylight Chemical Information Systems. The most comprehensive descriptions of the SMARTS language can be found in Daylight's SMARTS theory manual, tutorial and examples. OpenEye Scientific Software has developed their own version of SMARTS which differs from the original Daylight version in how the R descriptor (see cyclicity below) is defined. The standard may require updates to accommodate for new the elements named in 2016.

molecular structures smarts substructural

References

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  2. "Smallest Set of Smallest Rings (SSSR) considered Harmful". Archived from the original on October 14, 2007. https://web.archive.org/web/20071014064945/http://eyesopen.com/docs/html/cplusprog/node68.html. Retrieved 2017-02-08. , OEChem - C++ Manual, Version 1.5.1, OpenEye Scientific Software, Santa Fe, New Mexico
  3. Lipinski, C.A.; Lombardo, F.; Dominy, B.W.; Feeney, P.J. (1997) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings Adv. Drug Del. Rev., 46, 3-26. https://dx.doi.org/10.1016/S0169-409X(00)00129-0
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  6. Lewell, X.Q.; Judd, D.B; Watson, S.P.; Hann, M.M. (1998) RECAP-Retrosynthetic Combinatorial Analysis Procedure: A Powerful New Technique for Identifying Privileged Molecular Fragments with Useful Applications in Combinatorial Chemistry J. Chem. Inf. Comput. Sci. 38, 511-522. https://dx.doi.org/10.1021/ci970429i
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  9. Lyne, P.D. Kenny, P.W.; Cosgrove, D.A.; Deng, C.; Zabludoff, S.; Wendoloski, J.J.; Ashwell, S. (2004) Identification of Compounds with Nanomolar Binding Affinity for Checkpoint Kinase-1 Using Knowledge-Based Virtual Screening J. Med. Chem. 47, 1962-1968. https://dx.doi.org/10.1021/jm030504i
  10. Leach, A.G.; Jones, H.D.; Cosgrove, D.A.; Kenny, P.W.; Ruston, L.; MacFaul, P.; Wood, J.M.; Colclough, N.; Law, B. (2006) Matched Molecular Pairs analysis as a Guide in the Optimization of Pharmaceutical Properties; a Study of Aqueous Solubility, Plasma Protein Binding and Oral Exposure J. Med. Chem. 49, 6672-6682. https://dx.doi.org/10.1021/jm0605233
  11. Van Drie, J.H.; Weininger, D.; Martin; Y.C. (1989) ALADDIN: An integrated tool for computer-assisted molecular design and pharmacophore recognition from geometric, steric, and substructure searching of three-dimensional molecular structures J. Comput.-Aid. Mol. Des. 3 225-251. https://dx.doi.org/10.1007/BF01533070
  12. OpenEye Scientific Software | ROCS http://www.eyesopen.com/products/applications/rocs.html
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