Pathogenic variants of genes notably involved in BFNE may also determine more severe epileptic phenotypes presenting with developmental delay (DD), potentially evolving in intellectual disability (ID), and psychiatric and behavioural disorders. The epileptic activity may interfere with cognitive advancement, either in patients with previous physiological neurodevelopment or prior psychomotor delay
[32]. However, it is fundamental to acknowledge that clinical phenotypes of DD/ID not associated with epileptic seizures or EEG abnormalities have also been related to variants of the same genes, suggesting a primary genetic implication in the origin of these disorders. Pathogenic variants of the same genes may determine different phenotypes of encephalopathies, which may include or not epileptic manifestations. For this reason, the ILAE proposed the term ‘developmental and epileptic encephalopathy’ (DEE) to classify those conditions in which both the epileptic and the developmental components contribute to the clinical phenotype
[32]. Within the framework of the DEEs, two conditions are of interest in the neonatal period, namely the early myoclonic encephalopathy (EME) and the Ohtahara syndrome (OS), characterised by specific electroclinical patterns. Most of the neonatal-onset DEEs do not reflect the criteria of these electroclinical syndromes and are, therefore, referred to as unclassified DEEs
[14].
3.2.1. Early Myoclonic Encephalopathy (EME)/Ohtahara Syndrome (OS)
A clear distinction between EME and OS is difficult to make because these two electroclinical conditions frequently present a big overlap in terms of both clinical and electric features
[33].
EME is a severe epileptic condition affecting newborns in the first month of life. It is often considered as the result of metabolic causes, although cerebral malformations and non-metabolic genetic causes have been reported as well
[2][26]. Typical ictal manifestations include focal motor seizures, tonic spasms, focal or fragmented myoclonus and massive myoclonias. Usually, the EEG shows a background activity consistent with a burst-suppression (BS) pattern, with bursts of spikes and sharp waves lasting for 1–5 s, alternating with flat periods of 3–10 s, mostly during sleep, potentially resulting in atypical hypsarrhythmia later in life
[22][26]. Generally, EME is a serious and drug-resistant encephalopathy, leading to death within the first year of life in 50% of cases, and with an invariable severe neurodevelopmental outcome in those that survive
[26].
OS is considered a genetic disease, although it has also been related to cortical malformations, such as porencephaly, lissencephaly, and Aicardi syndrome
[26]. Onset is during the first three months of life, presenting with frequent tonic spasms (100–300
per day), often grouped in clusters, and, rarely, focal seizures. The EEG shows a typical continuous BS pattern, both in wake and sleep, at times asymmetric
[22][26]. The prognosis is severe, though usually better than EME, and may evolve into infantile spasms
[26].
3.2.2. Genes and Pathogenic Variants Mostly Involved in DEEs
Regardless of the potential plurality of causes (i.e., metabolic, genetic and/or structural defects), it is commonly accepted that a monogenic disease-causing variant might be the actual primary causative factor of both EME and OS, but also of other neonatal-onset unclassified DEEs
[2][8][14]. To date, many genes have been brought into play, such as
KCNQ2,
KCNQ3,
ARX,
STXBP1,
SLC25A22,
CDKL5,
KCNT1,
SCN2A and
SCN8A [2][14][25][34].
Particularly, pathogenic
KCNQ2 and
KCNQ3 variants permit to emphasise how different variants of the same gene can result in different, and even contrasting, epileptic phenotypes, ranging from the BFNE to severe DEE.
KCNQ2/3-related DEE is mostly due to de novo missense variants causing a dominant-negative effect or a loss of function of the M-current. However, parental mosaicism or rare variants leading to a gain of function of the M-current have also been reported
[25].
The
ARX gene is located on chromosome Xp21.3 and encodes a transcription factor involved in regulating neuronal migration and differentiation during brain development. Besides OS, it has also been related to the X-linked lissencephaly with abnormal genitalia (often involving neonatal seizures, or even prenatal ones) and Partington syndrome (a neonatal-onset disease leading to epilepsy, focal dystonia of the hands, intellectual disability and autistic traits)
[14][35].
STXBP1 gene (chromosome 9q34.11) encodes the MUNC18-1 protein, involved in the regulation of synaptic vesicle exocytosis
[36].
STXBP1-related DEE is usually consistent with an OS phenotype, starting with tonic seizures, particularly drug-resistant, which may end up into infantile spasms within the first months of life
[37].
Among the other possible clinical presentations,
STXBP1 pathogenic variants may generate focal seizures with neonatal-onset, non-syndromic epilepsies, Rett syndrome and intellectual disability without epilepsy
[38]. Overall, although it has been linked to a wide variety of developmental and epileptic phenotypes, disease-causing variants of
STXBP1 almost invariably present with developmental delay and intellectual disability
[36].
The
SLC25A22 gene (chromosome 11p15.5), namely the Solute Carrier Family 25, Member 22, also known as
GC1 gene, belongs to the
SLC25 gene family, involved in the transmembrane mitochondrial transport of various metabolites
[39]. Nowadays, pathogenic variants of
SLC25A22 have been described as causative of plural forms of neonatal onset epileptic encephalopathies, such as EME and OS, but also malignant migrating partial seizures of infancy (MMPSI), at times manifesting peculiar clinical aspects, such as dyskinetic movements and oculogyric crisis
[40].
The
CDKL5 gene is located on chromosome Xp22 and produces a large serine-threonine kinase essential for normal brain development and function
[41].
CDKL5-related encephalopathy presents with an onset of epileptic spasms during the first three months of life and usually evolves in severe DEE and West syndrome
[42][43]. CDKL-5 pathogenic variants may be responsible of a dramatic neurodevelopmental impairment, and present with autistic traits, ID and epilepsy
[44].
KCNT1 gene (9q34.3) encodes a sodium-activated potassium channel called Slack (sequence like calcium-activated potassium channel), relating to different forms of encephalopathy with onset within 6 months of age. The most frequently reported is MMPSI, with focal asynchronous intractable seizures and severe psychomotor delay. It also relates to autosomal dominant nocturnal frontal lobe epilepsy and other epileptic syndromes such as OS, EME, West and unclassified DEEs
[45][46]. KCNT1 variants may also determine rare and complex phenotypes including, among the other conditions, severe dystonia, leukoencephalopathy and cerebellar ataxia and almost invariably, ID
[47].
As previously mentioned,
SCN2A disease-causing variants may be responsible of benign (self-limiting) disorders, but in most of the cases (60–70%), they may result in neonatal-infantile DEE with drug-resistant seizures and poor neurodevelopmental outcomes
[31]. These cases are typically considered as a result of de novo missense heterozygous variants with a gain of function effects
[30]. Particularly, two epileptic syndromes have been strongly associated with
SCN2A variants, namely OS and MMPSI, though most of the cases manifest diverse unclassifiable epileptic phenotypes. Generally, at the onset of the disorder, seizures (which may be focal, tonic and tonic-clonic) are frequent and at times grouped in clusters. The EEG shows a slow and disorganised background activity with multifocal spikes. BS is rare and mostly present at the onset. Besides DEE, cases of intellectual disability, autistic traits and late-onset seizures have been reported too
[31].
SCN8A is a gene located on chromosome 12q13.13, encoding for a voltage-gated sodium channel involved in the regulation of neuronal excitability.
SCN8A pathogenic variants have been usually associated with a severe epileptic encephalopathy at very early onset, potentially leading to poor outcomes. Seizures may present with a different semeiology, including focal or generalised tonic-clonic ones, myoclonic absences or spasms, and, in most cases, these conditions are highly drug-resistant. EEG generally shows a diffuse background with slow activities and focal epileptiform discharges, mainly in the posterior regions
[48]. However, disease-causing variants of
SCN8A have been recently related to rare cases of BFNE, increasing the number of genes associated with a wide range of epilepsy phenotypes
[49][50].
In addition, it is noteworthy mentioning that an increasing number of genes not traditionally considered as causative of neonatal-onset epilepsies or DEEs has been described. In this regard, a recent review shed light on the several genetic aetiologies of phenotypes with neonatal-onset epilepsies or DEEs and movement disorders, which often include genes typically considered as causative of later-onset disorders
[10].