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Vierra, C. Black Widow Spider Tubuliform Silk. Encyclopedia. Available online: (accessed on 02 March 2024).
Vierra C. Black Widow Spider Tubuliform Silk. Encyclopedia. Available at: Accessed March 02, 2024.
Vierra, Craig. "Black Widow Spider Tubuliform Silk" Encyclopedia, (accessed March 02, 2024).
Vierra, C. (2021, September 08). Black Widow Spider Tubuliform Silk. In Encyclopedia.
Vierra, Craig. "Black Widow Spider Tubuliform Silk." Encyclopedia. Web. 08 September, 2021.
Black Widow Spider Tubuliform Silk

Spider silk is a high-performance fiber renowned for its extraordinary mechanical properties, rivaling steel, Kevlar, and a wide range of other natural and manmade materials.

spider silk spidroins tubuliform silk black widow spider

1. Introduction

Spider silk is a high-performance fiber renowned for its extraordinary mechanical properties, rivaling steel, Kevlar, and a wide range of other natural and manmade materials [1][2]. The western black widow, Latrodectus hesperus, has become one of the most extensively studied spider species with respect to silk gene expression and fiber constituents, both at the level of transcriptomics and proteomics [3][4][5][6][7][8][9][10][11]. Black widow spiders, which are cobweavers, are members of the superfamily Araneoidea. Morphological studies of female black widow spiders reveal seven distinct silk-producing abdominal glands, including the major ampullate, minor ampullate, tubuliform, aciniform, pyriform, aggregate, and flagelliform glands [12][13]. Each gland produces fibers or glues with distinct mechanical and biomolecular properties that are highly tuned to specific biological functions [14]. Differences in the mechanical properties of the threads are largely due to altered protein compositions, which are strongly correlated with differential expression of structural proteins called spidroins, a contraction of the words spider and fibroin [15][16]. Spidroins, therefore, represent a family of spider-specific fibroins that have significant roles in fiber mechanics. Members of this family have common biochemical characteristics, including large molecular masses with internal block repeats and non-repetitive N- and C-terminal domains within their protein sequences [16][17][18][19]. Although the spidroin family protein architectures all share internal block repeats, their specific amino acid sequences and lengths differ, and these differences in primary amino acid sequences have been a focal point of the scientific community to establish relationships between protein sequence, structure, and fiber mechanics [20][21][22].
The major ampullate and tubuliform glands have different morphological features, but both lumens store a liquid spinning dope that is extruded into a dry fiber via external spigots on the spider’s spinnerets. Despite morphological distinctions, these two glands are reported to share similar spidroin gene expression profiles [3]. In black widow spiders, the major ampullate gland extrudes dragline silk (also called major ampullate silk or MA silk), a fiber type used for locomotion and web construction, whereas the tubuliform gland manufactures the main constituent of egg cases, tubuliform silk. Egg cases, which also contain aciniform silk, enclose eggs and protect them from predators and environmental fluctuations, such as changes in temperature and humidity [23]. Tubuliform silk has been shown to contain the spidroin TuSp1, along with two non-spidroin proteins called egg case protein 1 and 2 (ECP1 and ECP2) [6][24][25][26]. Additionally, a recent proteomic analysis of tubuliform glands, along with deep transcriptome sequencing studies to identify silk-gland specific transcripts (SSTs), has led to the discovery of 14 SST proteins in tubuliform glands of black widow spiders [5]. Two of these 14 SST proteins have been previously shown to be constituents of tubuliform silk, which include ECP1 and TuSp1 [6][24][25][26]. However, it is unclear whether the other 12 SST proteins are extruded from the tubuliform gland, or alternatively, whether these factors represent non-extruded proteins that participate in the spider silk assembly pathway. To further emphasize the importance of this work, the identification of novel constituents of spider silk, specifically tubuliform silk, has significant value for the spider silk community, as insight into the ingredients that comprise natural silk has direct implications on synthetic silk production and its potential use for military, industrial, and engineering applications.

2. Proteomic Analysis of Tubuliform Glands, Spinning Dope, and Egg Sacs

In order to perform a comprehensive, in-depth analysis of the constituents of tubuliform silk, we developed a generalized proteomic workflow designed to analyze proteins expressed in tubuliform glands, the spinning dope, which represents the liquid components within the lumen of the glands and the egg sacs of black widow spiders using mass spectrometry (Figure 1). Scanning electron microscope studies of black widow spider egg cases have previously revealed two distinct fiber types [25]. The diameter sizes are approximately 5 μm and 0.5 μm, corresponding to tubuliform and aciniform silk, respectively, with the majority of the volume comprising tubuliform silk (Figure 2A,B).
Figure 1. General workflow for isolation of the tubuliform gland, egg sac, and dope (liquid removed from the tubuliform glands), followed by analysis of the tryptic peptides by MS/MS analysis.
Figure 2. SEM images of black widow spider egg case silk reveal two different diameter fibers: (A) 180× magnification; (B) 4000× magnification.
We collected egg sacs from black widow spiders, dissolved the fibers in chaotropic solvents, and performed in solution tryptic digestion, followed by nLC-MS/MS analysis. Analysis of the egg cases led to the identification of 30 protein groups, 174 peptide groups, 523 peptide spectral matches (PSMs), and 30,985 MS2 spectra. After manual inspection, the number of protein groups was reduced from 30 to 25 due to protein duplications entered into the database with different accession codes. The number of unique peptides that mapped back to targets ranged from 1 to 34. Some of the proteins found within egg cases included ECP1, ECP2, TuSp1, AcSp1, MaSp1, MaSp2, Flagelliform spidroin variant 1, aggregate spidroin variant 1, PySp1, cysteine-rich protein 2 (CRP2), and CRP4. ECP1, ECP2, and TuSp1 have previously been shown to represent constituents of tubuliform silk, while AcSp1 has been shown to be components of dragline, wrapping, and egg case silk [5][6][8][24][26]. Moreover, both MaSp1 and MaSp2 mRNAs have been shown to be present within tubuliform glands, suggesting tubuliform silk represents a composite of spidroins. The detection of aggregate spidroin variant 1 in egg sacs also supports the presence of glue proteins extruded from the aggregate gland during the spinning of egg cases, while the presence of PySp1 may indicate attachment disc silk is used to help immobilize the egg cases to a solid support.
Following the spinning of the egg sacs by female black widow spiders, we removed their tubuliform glands by microdissection, dissolved the glands in HFIP, and then performed in-solution tryptic digestion, followed by MS/MS analysis (Figure 1). Prior to lysis, we removed the spinning dope from the tubuliform glands, which was performed by the collection of internal liquid contents from the tubuliform glands. Analysis of the tubuliform glands led to the identification of 409 protein groups (collapsed to 341 protein groups; Figure 3A), 1118 peptide groups, 1832 PSMs, and 15,777 MS2 spectra. Consistent with previous studies, ECP1, ECP2, and TuSp1 were expressed in tubuliform glands. CRP4, a CRP family member, was also demonstrated to exist for the first time at the protein level within tubuliform glands. Although CRP4 was expressed in tubuliform glands, this observation differs from a previous transcriptomic analysis of L. hesperus, in which CRP1 and CRP3 mRNAs were detected in tubuliform glands [27]. Other proteins involved in a wide range of molecular and cellular functions were identified, including translation, protein folding and processing, cellular communication (signaling), metabolism, cytoskeletal activities, cell adhesion, and gene regulation (Figure 3B).
Figure 3. Venn diagram representing number of proteins expressed in tubuliform glands, liquid spinning dope, and egg sacs, along with a pie chart of percentages of proteins expressed in the tubuliform gland categorized into several different molecular and cellular functions: (A) Venn diagram; (B) pie chart.
Translation, protein folding and processing, and enzymes involved in metabolic reactions constituted approximately 25%, 14%, and 13%, respectively, of the proteome (Figure 3B). Some of the proteins expressed in tubuliform glands represented uncharacterized factors, while others fell into a broad range of cellular activities (Figure 3B). Overall, these data support that a large number of tubuliform gland proteins participate in silk protein biosynthesis.
Analysis of the spinning dope revealed 50 different protein groups. ECP1, ECP2, MaSp1, MaSp2, TuSp1, along with CRP4, were identified in the dope. Comparison of our proteomic data from egg cases, tubuliform glands, and spinning dope revealed seven proteins common to all three locations, which included TuSp1 (egg case fibroin), ECP1, ECP2, fasciclin, CRP4, and two uncharacterized proteins (Figure 3A). Representative MS/MS spectra corresponding to CRP4 and one of the uncharacterized proteins are shown (Figure 4A,B). The discovery of a common group of seven proteins in the liquid dope and egg cases further substantiates the assertion that these molecules are constituents of tubuliform silk. Moreover, it implies CRP4, which has been shown to be a constituent of dragline silk, may have a generalized functional role in both fiber types [7].
Figure 4. Tandem MS analysis of tryptic fragments generated from in-solution digestion of tubuliform spinning dope identifies the presence of a CRP4 peptide sequence, VVGPFPICDYGLR, and peptide sequence of an uncharacterized protein, SQGNVAMSSSQAGYG QGQSYSSNYAATGDSGTGQGGYSSMR. (A) HCD (MS/MS) spectrum of CRP4 precursor ion with MH+ m/z 1271.74 supports the presence of CRP4 in spinning dope; (B) CID (MS/MS) spectrum of the uncharacterized protein’s precursor ion with MH+ m/z 4041.68 supports the presence of ECP3 in spinning dope. Y- and b-ions and their corresponding masses are shown above the peaks.
Previous studies have identified 14 SST proteins in tubuliform glands [5]. Of the 14 SST proteins, 8 were shown to be expressed exclusively in tubuliform glands; these eight SST proteins were not detected in the major or minor ampullate glands. Of the eight SST tubuliform gland proteins, two were known constituents of tubuliform silk (ECP1 and TuSp1), while the other six SST proteins were classified as uncharacterized proteins [5]. In order to determine whether these six SSTs were present in tubuliform spinning dope and egg cases, we analyzed a customized protein database containing only these six translated SSTs. Two of the SST proteins were detected in both locations (dope and egg cases), which corresponded to transcriptome scaffold ID numbers 129 (silk_comp16922_c0_seq1) and 503 (Contig242). One of the SST proteins, transcriptome scaffold ID #717 (silk_Contig894), was found exclusively in tubuliform glands, while the remaining three SST proteins were not found in either tubuliform glands, dope, or egg case fibers.


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