SV fusion is a series of events, and its flow is controlled by a number of protein–protein interactions: Fusogenic SNAREs, the Ca²⁺-sensor synaptotagmin, the activator/regulator complexin, the assembly factors Munc18 and Munc13, and the disassembly factors NSF and SNAP have been identified as key factors of the core synaptic fusion machinery [11].

Synaptotagmins expressed on the SV membrane cooperating with the SNAREs complex has been implicated to mediate the fusion of neurotransmitter-containing SVs with the presynaptic plasma membrane [1,2]. Recent structural and functional studies suggest that AP-evoked sub-millisecond SV fusion occurs with the release of inhibition by Ca²⁺ binding to synaptotagmin [38,65]. Complexin, a cytoplasmic protein that is crucial for the regulation of neurotransmitter release [66,67], contributes to the inhibition process. The structure of SNAREs, synaptotagmin-1, and complexin-1 complex clarifies two interfaces: the primary interface between synaptotagmin-1 and SNAREs, and a tripartite interface between SNAREs, complexin-1, and synaptotagmin-1. These two interfaces of the complex suggest the cooperation of all three components in the evoked SV fusion [11]. The tripartite complex of SNAREs/complexin/synaptitagmin-1 is formed in the absence of Ca²⁺, suggesting a prefusion complex inhibiting SV fusion [11].

Synaptotagmins contain cytoplasmic C2A and C2B domains [68,69]. The structure of SNAREs, complexin-1, and synaptotagmin-1 complex clarifies a tripartite interface between one synaptotagmin-1 C2B domain, SNAREs and complexin-1 [65]. This tripartite interface formation is promoted by complexin-1 binding to SNAREs. The second synaptotagmin-1 C2B domain simultaneously interact with the other side of the SNAREs via a pairwise interface. Synaptotagmin-1 C2B residues is responsible for the Ca²⁺-triggered synchronous neurotransmitter release and the suppression of spontaneous release. Synaptotagmin-1 C2B residues are involved in both the tripartite interface of SNAREs, complexin-1 and synaptotagmin-1 and the primary interfaces of SNAREs and synaptotagmin-1 [11,65,70].

Synaptotagmin-2, at the calyx of the Held synapse and in some GABAergic neurons, regulates neurotransmission redundantly with synaptotagmin-1 [71,72]. Synaptic transmission depends on synaptotagmin-1 in the early postnatal calyx of the Held synapses, but later switches to synaptotagmin-2 [72], suggesting dynamic changes in synaptotagmin content at the synapses during development. In the hippocampal neurons, synaptotagmin-7 acts redundantly with synaptotagmin-1 in the maintenance of the RRP of SVs [73]. The loss of synaptotagmin-1 function in immature neurons can compensate with the expression of synaptotagmin-7 [12]. The structural study of the tripartite complex of SNAREs/complexin/synaptitagmin-1 has not yet been applied for synaptotagmin-2 or -7 in the fusion machinery.

Ca²⁺-triggered evoked SV fusion causes synchronous neurotransmitter release, which occurs within tens of microseconds of a stimulus and completes within several milliseconds [74], transmitting a fast and reliable signal. The evoked SV fusion also causes asynchronous neurotransmitter release, which sets in more slowly and can persist for tens or hundreds of milliseconds [75,76], and has influences on network parameters, including the efficacies of neurotransmission, synchronicity, and plasticity [77,78,79]. Synaptotagmin-7 [73,79] and Doc2 [80,81] are reported as being high-affinity Ca²⁺ sensors for asynchronous release. Both Doc2 and synaptotagmin-7 exhibit the slow Ca²⁺-regulated membrane-binding kinetics and high affinities required for asynchronous release [80,82,83].

Synaptotagmin-7 mediates asynchronous release in cultured hippocampal neurons [73], and in granule cell synapses as well as in inhibitory synapses formed between basket cells and Purkinje neurons in the cerebellum [84,85], and in excitatory neocortex synapses formed between pyramidal cells and Martinotti neurons [86]. The role of synaptotagmin-7 in asynchronous release is usually only apparent when more than one stimulus is applied [73,85]. At the neuromuscular junction of Caenorhabditis elegans, synaptotagmin-3 triggers delayed Ca²⁺-dependent neurotransmitter release following fast synaptotagmin-1-mediated release. The fast and slow properties of neurotransmitter release are due to essentially different C2 domains in synaptotagmin-1 and -3 [87].

Synaptotagmin-7 underlies phasic somatodendritic dopamine release and its Ca²⁺ sensitivity in the substantia nigra pars compacta. In contrast, synaptotagmin-1, underlying axonal dopamine release, plays a role in tonic dopamine release. However, synaptotagmi-1 can facilitate phasic dopamine release after synaptotagmin-7 deletion [88]. These results indicate that synaptotagmin Ca²⁺ sensors subserve different aspects of the transmitter release processes.

Doc2α mediates asynchronous release in cultured hippocampal neurons, both after single AP and during AP trains [80,83,89,90]. Loss of asynchronous release in Doc2α deficient neurons can be rescued by Doc2β [80]. Inconsistently, Purkinje cells to deep cerebellar nuclei synapses [91], nor autaptic cultured hippocampal neurons lacking Doc2 shows no significant changes in asynchronous release [81]. At excitatory synapses in mouse hippocampus, the major Ca²⁺ sensor for asynchronous release is Doc2α, while synaptotagmin-7 supports this process through the activity-dependent docking of SVs [92].

Munc18 binds to free syntaxin-1A, and the heterodimeric complex prevents the ternary SNAREs formation [93,94]. The syntaxin/Munc18 complex is forwarded to the ternary trans-SNAREs catalyzed by Munc13 [54,95,96]. Munc13 promotes the assembly of the SNAREs in cooperation with Munc18, forming the parallel configuration of all components of the SNAREs [50], suggesting that Munc13 and Munc18 are assembly factors for establishing the ternary SNAREs. Both syntaxin-1A (membrane SNARE) and synaptobrevin-2 (vesicle SNARE) weakly interact with the MUN domain of Munc13 [50,55,97,98]. An interaction between synaptobrevin-2 in the membrane proximal region and Munc13 in the MUN domain is essential for the function of Munc13 [55]. The efficiency of Ca²⁺-triggered SV fusion is significantly increased by Munc18 and Munc13 in a reconstituted fusion assay [50].

After SV fusion, the ternary SNARE complex is disassembled for recycling the individual SNARE proteins. The ATPase NSF disassembles the ternary SNARE complex, with ATP hydrolysis cooperating with the adaptor protein, SNAP [99,100,101]. These catalyzing molecules of NSF and SNAPs interacting with ternary SNAREs form the so-called 20S complex, for starting state of the disassembly process. However, the molecular mechanism for NSF-mediated SNARE complex disassembly is not yet clarified [11].

High-resolution reconstruction of the NSF, αSNAP, and the full-length soluble neuronal SNARE complex (composed of syntaxin-1A, synaptobrevin-2, SNAP-25A) demonstrated the molecular interactions between NSF and αSNAPs with the SNAREs as follows. [102] Electrostatic interactions by which two αSNAP molecules interface with a specific surface of the SNARE complex. This interaction positions the SNAREs such that the 15 N-terminal residues of SNAP-25A are loaded into the ring pore of NSF via a spiral pattern of interactions between a conserved tyrosine NSF residue and SNAP-25A backbone atoms. This loading process likely precedes ATP hydrolysis. Subsequent ATP hydrolysis then drives complete disassembly. Details of the molecular mechanisms for SNARE complex disassembly machinery have been reported in a review [11].

The ‘zap-and-freeze’ method, generating an AP and following high-pressure freezing at defined time points, can enable characterization of the spatial and temporal organization of the SV fusion sites following an AP firing [13]. With this technical approach, SV dynamics were morphologically analyzed at milliseconds time points after AP in presynaptic terminals of mouse hippocampal neurons in culture. 2% of the synaptic profiles in unstimulated synapses showed exocytic pits in the AZ. Within 5 msec after AP, the synchronous fusion of multiple SVs occurred throughout a single AZ. During synchronous fusion, docked SVs reduced by ~40%, in contrast, SVs close to the membrane (between 6 and 10 nm) slightly increased. Such SVs are possibly in a “loose state”, with SNAREs, synaptotagmin-1, and Munc13 still being engaged [103]. At 5 msec, 18% of the synaptic profiles showed exocytic pits in the AZ. By 11 msec, fused SVs collapsed into the plasma membrane. From 5 to 11 msec, asynchronous fusion followed in the center of the AZ. During asynchronous fusion, the docked SVs are not further depleted in spite of their ongoing fusion, suggesting an active recruitment of SVs during this process. At 14 msec, the docked SVs are fully restored to prestimulus levels with newly docked SVs. This fast recovery of docked SVs is Ca²⁺-dependent, and temporary lasting for 100 msec or less. During the recovery period, newly docked SVs undock or fuse, indicating that the sequence of rapid redocking and subsequent slow undocking may underlie the synaptic facilitation.

The series of snapshot images taken by the ‘zap-and-freeze’ method demonstrated millisecond SV dynamics, such as synchronous and asynchronous fusion, undocking, and docking, which are regulated by AZ proteins as discussed in Section 2.2, following transient Ca²⁺ elevation, with the opening of Ca_V channels accompanying AP.

AZ proteins contribute to the establishment of multiple functionally definable stages of the SV state, as discussed in Section 2.2. For the replenishment of release site with SVs, possible functions of RIM-BP, CAST, Bassoon, and Piccolo have been reported.

RIM-BP, interacting with RIM and Ca_V channels [58], organizes the SV release site topography [37,60]. RIM-BP in Drosophila supports a rate-limiting stage required for the replenishment of high release-probability SVs that follows depletion of SVs [104]. In a mammalian auditory synapse of the cochlear nucleus RIM-BP controls both the release probability and the SV replenishment [31]. Loss of RIM-BP2 lowered the release probability, due to a slowed down of the Ca²⁺-dependent fast SV replenishment. The ultrastructural studies revealed reduced docked SVs and proximal SVs, in addition to an impaired Ca_V channels topography in the AZ [31]. Ca_V2.1 channel localization in the AZ is specifically controlled by RIM-BP binding to Bassoon [105]. Thus, it is likely that RIM-BP, interacting with Bassoon via RIM, controls the rate of Ca²⁺-dependent fast SV replenishment at the fast central auditory synapse [31].

CAST/ELKS also controls SV replenishment [15]. In cultured sympathetic presynaptic terminals, CAST^S45 is phosphorylated in an activity-dependent manner. Expression of the phosphomimetic-CAST reduced the SV number in the RRP. The paired-AP protocol experiments indicate that the phosphorylation of CAST^S45 causes paired-EPSP depression with a time window of 30–120 msec after the first AP. Overexpression of the phosphonegative-CAST reduced the paired-EPSP depression (<200 msec), suggesting that phosphorylated CAST^S45 downregulates SV reloading shortly after AP, but not over a longer period. The possible kinase is a serine/threonine kinase SAD-B, a presynaptic kinase that is associated with the AZ cytomatrix and SVs, and that phosphorylates CAST^S45 in vitro [15]. Acute deletion of CAST significantly delayed the rate of fast SV reloading, following the RRP depletion with AP bursts. These results indicate that CAST is required for fast SV reloading; however, the phosphorylated CAST, within 200 msec after AP, brakes transmitter release by slowing down SV reloading. The braking of SV reloading may save SVs for an incoming AP to the presynaptic terminal. RIM1, a binding partner of CAST, interacting with Munc13-1, is implicated in SV docking and priming [106]. These protein interactions are likely involved in the CAST-mediated fast replenishment of release sites with release-ready SV.

Bassoon participates in the reloading of SVs to release sites in excitatory synapses of cerebellar mossy fiber connecting to granule cell [40]: Bassoon knockout enhanced short-term synaptic depression during sustained high frequency stimulation, halving the SV reloading rate, whereas it caused no effect on basal synaptic transmission. At the central endbulb synapse in Bassoon knockout mice, SV replenishment rate was slowed down, whereas vesicle number and the accompaniment were normal [19]. These results suggest a role for Bassoon in speeding up high activity-dependent SV tethering, leading to the rapid replenishment of release sites. At the rat calyx of the Held synapse, Bassoon and Piccolo separately or simultaneously share functions in the SV replenishment during high-frequency synaptic activity [41]. In Piccolo-lacking calyxes, the recruitment of slowly releasing SVs in the RRP, that is normally invisible for AP-induced release, is visible during high-frequency stimulation, indicating a role for Piccolo in establishing a sub-pool of the RRP for preventing depletion of release-ready SVs during prolonged and intense firing activity [41]. Additive roles of Piccolo and Bassoon in SV replenishment are revealed in the fast central auditory synapse: Piccolo unlikely influence the release probability, while Bassoon likely regulate it [42].