Rare Genetic Syndromes and Oral Anomalies: History
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Rare genetic syndromes, conditions with a global average prevalence of 40 cases/100,000 people, are associated with anatomical, physiological, and neurological anomalies that may affect different body districts, including the oral district.

  • rare genetic syndromes
  • dento-oro-maxillofacial anomalies
  • oral abnormalities

1. Introduction

A genetic syndrome is a condition caused by any abnormality in one’s genome that may be inherited or de novo. There is no clear and unique definition of rare genetic syndrome, but the meaning most commonly attributed to it in literature is that of a pathology with an average prevalence threshold ranging between five and 76 cases/100,000 people, with a global average prevalence of 40 cases/100,000 people. The Orphan Drug Act defines a rare disease or condition as a disease (a) which affects less than 200,000 people in the United States or (b) for which there is no reasonable expectation that the cost of developing a drug and making it available in the US will be recovered from its sale [1]. The member states of the European Union have adopted as a definition of rare disease, “the life-threatening or chronically debilitating conditions that affect maximum 5 persons over 10,000” [2].
Genetic syndromes are associated with anatomical, physiological, and neurological differences that may affect different body districts, including the mouth and its associated structures. Chromosomal localization is known for more than 50 of genetic diseases and responsible mutated genes have been discovered in more than 60 of these diseases with craniofacial and oral phenotypes alterations [3]. According to the London Dysmorphology Database [4], in 2011, approximately 900 out of 5000 genetic syndromes include dental-oro-maxillofacial anomalies in their clinical pictures, mostly among those affecting the ectodermal derivatives. Understanding dental genetics and developmental biology will allow the identification of the processes involved in the genesis of specific abnormalities [5][6][7].
Warning oral signals are dental and oral anomalies which, together with extraoral signals, can facilitate the early diagnosis of rare genetic syndromes. Dental anomalies consist in alterations of the external appearance, internal structure, or topography of one or more primary or permanent teeth, resulting from a disorder that can be genetically determined, congenital, or acquired. Dental anomalies can include reduced or increased teeth number, as well as variations in shape or volume, location or position, development, and structure of teeth (Table 1).
Table 1. Simplified table of dental anomalies and oral warning signs.
Type of Anomaly Clinical Signs Anomalies Observed
Number anomalies    
Reduced number Anodontia Absence of all dental elements
Oligodontia Presence of less than half of the normal number of teeth
Ipodontia Presence of more than half of the normal number of teeth
Increased number Supplementary teeth The tooth repeats the shape and function of the adjacent tooth
Supernumerary teeth Elements are atypical, smaller and rudimentary. They are classified into:
-Mesiodens: between the two upper central incisors
-Paramolar: in the molar region
-Distomolar: behind the third molar
Location anomalies Ectopia The element is located near the usual site, in a vestibular, lingual or palatal position
Transposition Two contiguous teeth reciprocally invert their position
Heterotopia Element located far from the usual position. If the position is outside the oral cavity it is defined as migration.
Position anomalies Version Inclination of a tooth towards the buccal or palatal side, forward (mesioversion) or backward (distortion)
Inversion Inverted tooth position (root versus alveolar ridge and crown versus basal bone portion). It is constantly accompanied by inclusion.
Rotation The element rotates along its longitudinal axis
Intrusion The tooth crown is on a lower plane than the occlusal plane
Extrusion The coronal margin is located higher than the occlusal plane
Volume anomalies Gigantism Macrodontia
Dwarfism Microdontia
Taurodontism Tooth with wide crown, short roots, extended pulp chamber
Shape anomalies Crown anomalies Accessory cusps, conical or tuberculate shape of the crown
Roots anomalies Anomalies in number, shape and size
Endodontic anomalies Anomalies in number, shape and size of the root canal morphology
Developmental anomalies Enamel pearl Small hard rounded excrescence, located near the enamel-cement junction.
Fusion Fusion of two teeth. Coalescence anomaly: due to close contact between germs; it can affect crowns and roots or only the crowns
Concrescence Two teeth are joined along the root surfaces by cementum. Coalescence anomaly
Invaginated tooth It is due to an infolding of enamel into dentine. There are two forms, coronal and radicular, with the coronal one being more common.
Structural anomalies Enamel anomalies Quantitative and/or qualitative enamel defect affecting some or all teeth. Amelogenesis imperfecta: abnormal formation of the enamel, unrelated to any systemic or generalized conditions. Autosomal dominant or autosomal recessive or x-linked pattern. It affects both deciduous and permanent.
Dentin anomalies Dentinogenesis imperfecta: brown teeth, crowns shrunk due to enamel flaking not supported by intact dentin. Autosomal dominant. It affects both deciduous and permanent.
Developmental dental defects can result from teratogenic actions during odontogenesis as well as genetic disorders, isolated or associated to other signs in a syndrome [8]. Dental malformations may be the most evident manifestations, and therefore first diagnosed, while other signs affecting different organs will only manifest themselves later. These anomalies have both functional and aesthetical implications [9].
Dentists should be aware of the existence of rare genetic syndromes and should know how to clinically recognize, manage, and treat the dento-oro-craniofacial anomalies they might include. Dentists, in fact, could be asked to cooperate with other specialists in the diagnosis of these diseases. Rare genetic syndromes, despite their generally chronic and progressive nature, have long-term complications that can be reduced or delayed if they are early diagnosed and managed [10]. An oral rehabilitation is frequently necessary to guarantee mastication, swallowing, phonetics, and mechanical ventilation. Moreover, good dental appearance can positively contribute to the integration of affected subjects in society as well in school [11].
The main sources of information for clinicians on management recommendations for patients with rare genetic syndromes are very limited and consist of: Internet sites such as Orpha.net [12], a portal for rare diseases and orphan drugs, which offers a list of the diseases; databases such as Phenodent, where it is possible to find help in the diagnosis and management of dental anomalies [13]; the Genetic and rare diseases information center (GARD) [14], a program of the National Center for Advancing Translational Sciences, where the rare diseases are classified and explained; and the Online Mendelian Inheritance in Man (OMIM) [15][16], that since 1966 has continuously provided an updated catalog of human genes and genetic disorders and traits, and it has been online since 1987. Orpha.net provides an exhaustive list of all rare diseases, updated every year.
Rare diseases present on Orpha.net are defined according to two criteria:
  • Homogeneity: Each disease is defined by its clinical homogeneity, regardless of the etiology or the number of identified responsible genes.
  • Rarity: Each disease is defined based on the European legislation, which establishes a prevalence threshold not exceeding 5 affected persons per 10,000 people.
Rare diseases need to be described in the international scientific literature (peer-reviewed articles) with at least two cases, confirming the non-random association of clinical signs [17].
Regardless of the oral malformation observed, therapeutic management is often long and complex. It starts at the time of diagnosis and continues during the child’s growth until adulthood, with the involvement of a multidisciplinary team.
Five syndromes are described below via three different cases, namely the Crouzon Syndrome, a Congenital Nemaline Myopathy, the CHARGE Syndrome.

2. Crouzon Syndrome

Twenty-eight papers describing the relationship between the Crouzon syndrome and oral anomalies were found in the PubMed search.
The Crouzon syndrome (CS) is an autosomal dominant genetic disease caused by mutations in one of the FGFR (fibroblast growth factor) genes, especially the FGFR2, which is responsible for the early closure of the cranial sutures. It has an incidence of 1 case in 25,000 births [18].
This syndrome has an extremely variable phenotypic manifestation in both the cranial and facial features [19][20]. On the one hand, some patients present a mild form of this syndrome that can guarantee a fully functional lifestyle. On the other hand, other patients suffer from a severe form of the disease that can cause a significant impact on their quality of life [20].
Clinical manifestations include tall and flattened forehead, maxillary hypoplasia and mandibular prognathism. The arrested growth of the upper maxilla causes bilateral severe proptosis and corneal exposure, thus resulting in shallow orbits. Hypertelorism, exorbitism, strabismus, and amblyopia are frequently found as well [21][22][23][24]. Alongside the ocular problems, these anatomical anomalies can lead to other functional problems like increased intracranial pressure and upper airway obstruction [25].
C. M. is a 10-year old male, patient of the Dental Clinic of San Paolo Hospital, Milan. During the extra-oral examination, the boy presented the typical signs of Crouzon Syndrome: a high and large forehead with a convexity in the region of the anterior fontanelle, flattening of the occipital region, bicoronal craniosynostosis and hypertelorism. He did not present maxillary hypoplasia or exorbitism. No mental retardation was observed.
The oral manifestations included the maxillary dental arch in V shape (Figure 1d), dental crowding, class II maloocclusion with an anterior severe open bite and lower labial interposition at rest (Figure 1a–c).
Figure 1. Crouzon syndrome: extra-oral (a,b) and intra-oral pictures (ce). Upper and lower arch expanders are present (d,e). An arrested cavitated caries lesion in a second primary molar (8.5) is evident (e).
The intraoral examination showed an intermediate mixed dentition phase, decayed and filled teeth and gingivitis due to the presence of bacterial plaque, dental calculus, and oral breath (Figure 2).
Since the patient started an orthodontic treatment with upper and lower arch expanders in another dental clinic, the pre-treatment radiographs and pictures are not available.

3. Congenital Nemaline Myopathies

Only one paper describing the relationship between congenital nemaline myopathies and oral anomalies was found in the PubMed search.
Congenital nemaline myopathies (CNM) are a heterogenous group of congenital myopathies caused by inherited mutations in more than twelve genes. CNM incidence is estimated to be one in 50,000 live births. The genes which encode skeletal α-actin (ACTA1) and nebulin (NEB) are the most frequently mutated [26].
The main manifestations of the disease include muscle weakness and hypotonia, with the presence of nemaline bodies in muscle fibers. CNM can manifest itself with multiple clinical phenotypes: in the most severe cases it can lead to neonatal death, while in the milder ones the disease causes only a slight impairment of motor function. When the respiratory muscles are involved as well, patients are ventilator-dependent [27]. No therapeutic treatment is available yet [26]. The clinical manifestations of CNM include severe muscle weakness, hypoventilation, swallowing dysfunction, and no speech ability. Oral or dental anomalies in patients with this disorder are not yet described in literature, except for a reduced development of the maxilla and mandible, due to muscular hypotonia [28].
L.R. is a three-year-old boy affected by Congenital Nemaline Myopathy, who required a visit at the Dental Clinic of S. Paolo Hospital, Milan for severe mobility of all primary incisors.
The oral examination showed a severe reduced development of the maxilla, with a severe high-arched palate and reduced mouth opening (Figure 2).
Figure 2. Congenital nemaline myopathies: extra-oral (a), intra-oral pictures (b,c), periapical radiograph of lower incisors (d) and the upper incisors after extraction (e).
Mobility of all the primary incisors was found, together with a delayed eruption of primary molars and canines. Due to the patient’s condition an orthopantomography was impossible to be carried out. Therefore, a periapical radiography was performed despite the difficulty in positioning the intraoral plate because of the reduced arches width (Figure 2b,c). A severe root resorption of unclear etiology and no evidence of permanent successors was noted (Figure 2).

4. CHARGE Syndrome

Twenty-one papers describing the relationship between the CHARGE syndrome and oral anomalies were found in the PubMed search.
The CHARGE syndrome is an autosomal dominant genetic disorder with multiple dysmorphic and congenital anomalies. It is a highly variable syndrome, usually diagnosed during the prenatal or neonatal period [29][30]. The actual incidence remains unknown, but it is believed to occur approximately in one case in 10,000–15,000 live births [31].
The term ‘CHARGE’ is an acronym generated by the initials of the most frequent clinical features: Coloboma, Heart defects, choanal Atresia, Retardation (of growth and/or development), Genitourinary malformation and Ear abnormalities [32]. Thus, the diagnosis is predominantly clinical, using the criteria proposed by Blake et al. [33], modified by Verloes [34], and then confirmed by genetic testing [31].
Clinical findings include orofacial cleft, distinctive facial appearance, tracheoesophageal fistula, limb abnormalities, cranial nerve dysfunction, semicircular canal hypoplasia, delayed attainment of motor milestones, genital hypoplasia, and rarely, immune deficiencies [29][30].
A.T. is an eight-year old girl who attended the Dental Clinic of San Paolo Hospital, Milano for dental treatment. She was diagnosed both clinically (all the main signs of the CHARGE syndrome were present) and genetically, since the CHD7 gene mutation was confirmed. The girl presented bilateral chorio-retinal coloboma, cerebral-cerebellar malformation, middle and inner ear malformation, reduced weight and stature growth, globally delayed psychomotor development with absence of language. Cleft lip and cleft palate were also reported, surgically corrected in 2013. Intraoral examination showed a good oral hygiene and no dental caries lesions (Figure 3).
Figure 3. CHARGE syndrome: extra-oral (a,b) and intra-oral pictures (cf).
The intraoral examination showed a mixed dentition with lacking space in both arches for the eruption of the permanent incisors and a class III malocclusion with anterior crossbite (Figure 3c), due to maxillary hypoplasia.
An attempt to perform an orthopantomography was made, but the result was poor, and it was not possible to evaluate the presence of all permanent teeth. However, a prediction of dental crowding was detected.

This entry is adapted from the peer-reviewed paper 10.3390/children9010012

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