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Oral Microbiota in Head and Neck Cancers: History
Please note this is an old version of this entry, which may differ significantly from the current revision.
Subjects: Oncology
Contributor: Abdelhakim Salem

Head and neck squamous cell carcinoma (HNSCC) comprises the majority of tumors in head and neck tissues. The prognosis of HNSCC has not significantly improved for decades, signifying the need for new diagnostic and therapeutic targets. Recent evidence suggests that oral microbiota is associated with carcinogenesis.

  • Oral Microbiota
  • Head and Neck Cancers
  • oral cancer
  • cancer
  • tumor
  • squmaous cell carcinoma
  • microbiota

1. Introduction

Head and neck squamous cell carcinoma (HNSCC) arises from the mucosal lining of the oral cavity, pharynx and larynx and it comprises the majority of tumors in the head and neck region [1,2]. Globally, HNSCCs are among the most prevalent cancers with an estimated incidence of 880,000 new cases and 440,000 deaths in 2020 alone [3]. In India, oral squamous cell carcinoma (OSCC) is causing most of the cancer-related deaths among men [3]. The 5-year survival rate of HNSCC remains low and has not significantly improved over the past years especially for metastatic lesions [4]. Tobacco consumption, alcohol abuse and infection with human papillomavirus (HPV) in adult males are the key risk factors for developing HNSCC. However, an increasing incidence of aggressive OSCC has been reported in young female patients with no history of exposure to such traditional risk factors [5]. Thus, there is an urgent need to identify new risk factors that could provide prognostic and therapeutic targets in HNSCC.
The oral microbiome consists of up to 750 microorganisms including bacteria, archaea, protozoa, fungi, and viruses [6,7]. In the oral cavity, microbial colonies can grow on hard and soft tissues including tongue, buccal mucosa, tonsils and palate. These surfaces provide different growth conditions and therefore the biofilms can significantly differ in their composition [6]. In a healthy state there is an equilibrium between these species, where the diversity and relative proportions are stable. In dysbiosis, however, such equilibrium is disrupted and followed by a compositional shift towards proinflammatory commensals with a reduction of beneficial microbes. These microbial changes could result in long lasting inflammatory conditions such as periodontitis [8].
An amassing body of evidence supports the association between oral microbiota and cancer. Oral dysbiosis can influence tumorigenesis by suppressing the immune response, synthesizing potent mutagens (e.g., acetaldehyde), and mediating chronic pro-inflammatory conditions [8,9]. Periodontitis, in this regard, has been linked to an increased incidence and poor survival of cancer [9,10]. In addition, certain oral potentially malignant disorders (OPMDs) were associated with dysbiosis [9,11]. However, data reporting the role of oral microbiota in cancer is not always consistent. On the one hand, bacterial genotoxins, such as cytolethal distending toxins, can promote DNA damage in the host cells. Furthermore, increased levels of bacterial species including Fusobacterium nucleatum (F. nucleatum) and Porphyromonas gingivalis (P. gingivalis) were associated with colorectal and pancreatic cancers, respectively [9,11]. On the other hand, oral microbiota were shown to mediate anti-tumor effects through carcinogen inactivation [9,12]. Additionally, bacterial-derived outer membrane vesicles have immunomodulatory effects and hence were suggested as novel therapeutic agents in cancer [13,14].

2. Oral Microbiota in Head and Neck Cancers

The16S ribosomal RNA (rRNA) gene polymerase chain reaction (PCR) was the most commonly used approach for oral bacterial detection and identification. The sampling and characterization methods of the oral microbiota are summarized in Table 2 and Figure 2.
Figure 2. The different methods used for collecting and characterizing oral microbiota from patients with head and neck squamous cell carcinoma. (A) Oral microbiota samples are obtained by means of saliva expectoration; mouth wash samples; oral swab samples; or tissue biopsy. (B) Oral microbiota were characterized by DNA-DNA hybridization; primers targeting the 16S ribosomal RNA gene. (C) Immunohistochemistry of tumor sections was also used to identify oral microbiota.
Table 2. The various methods applied in the included studies.
Study Method Sampling Type Number of Samples Microbiota Type Microbiota Characterization
[18] DNA-DNA hybridization Whole unstimulated saliva through expectoration 274 (229 OSCC-free controls; 45 OSCC) 40 common oral bacteria were tested Digoxigenin-labeled DNA using random primer technique was used
[44] IHC Tissue biopsy, PEFF 15 (5 normal tissue; 10 GSCC) P. gingivalis; S. gordonii Rabbit polyclonal antibodies (1:1000)
[19] 16S rRNA PCR Stimulated saliva 5 (2 matched non-OSCC controls; 3 OSCC) Total bacterial diversity and relative abundance PCR primers were based on the V4–V5 hypervariable region
[20] 16S rRNA PCR DNA extraction from tissue biopsy samples 20 (10 tumor-free tissues from OSCC patients; 10 OSCC) Total bacterial diversity and relative abundance PCR primers for V4–V5 hypervariable region; the eubacterial primers: prbac1 and prbac2
[41] 16S rRNA PCR Swab samples from normal controls and lesions 83 (49 normal controls; 34 OSCC/OPMDs) Total bacterial diversity and relative abundance 16S rDNA V4 hypervariable region were sequenced using the Illumina MiSeq platform
[21] 16S rRNA PCR Oral rinse samples 363 (242 normal controls; 121 OSCC/OPSCC cases) Total bacterial diversity and relative abundance The Illumina MiSeq primers targeting the V4 variable region
[22] 16S rRNA PCR Unstimulated saliva 376 (127 normal controls; 124 OPMDs; 125 OSCC) Total bacterial diversity and relative abundance The PCR primer pair (F515/ R806) targeting the V4 region of bacterial 16S rDNA
[42] 16S rRNA PCR Swab samples from normal controls and lesions 27 (9 normal controls; 9 OPMDs; 9 cancer) Total bacterial diversity and relative abundance The primer pair D88/E94 produced near full length of 16S amplicons (targets V6–V9)
[47] 16S rRNA PCR Paired normal and tumoral resection specimens 242 (121 tumor-free controls; 121 tumors) Total bacterial diversity and relative abundance PCR of the V1–V4 hypervariable regions of the 16S rRNA gene using the M13 primers
[23] 16S rRNA PCR Swab samples from normal controls and lesions 80 (40 anatomically matched normal controls; 40 OSCC) Total bacterial diversity and relative abundance The PCR primer pair (515F/926R) targeting the V4–V5 regions using Illumina MiSeq tool
[48] 16S rRNA PCR Mouth wash samples 383 (254 matched normal controls; 129 HNSCC) Total bacterial diversity and relative abundance The PCR primer pair (347F/803R) targeting the V3–V4 variable regions of the 16S rRNA
[24] 16S rRNA PCR Unstimulated saliva; peripheral blood (genotyping) 289 (151 matched controls; 138 OSCC) 20 species were included for case–control comparison The PCR primer pair (341F/926R) targeting the V3–V5 regions of the 16S rRNA
[45] 16S rRNA PCR Oral rinse samples 83 (20 normal controls; 11 high-risk; 52 tumors) Total bacterial diversity and relative abundance The PCR primer pair (515F/806R) targeting the V4 variable region of the 16S rRNA
[25] 16S rRNA PCR Tissue biopsy samples 52 (27 oral fibroepithelial
polyp as controls; 25 OSCC)
Total bacterial diversity and relative abundance The PCR primer pair (27FYMF/519R) targeting the V1-V3 regions of the 16S rRNA
[50] 16S rRNA PCR Unstimulated whole saliva 30 (7 healthy controls; 9 dental compromised; 14 HNSCC) Total bacterial diversity and relative abundance The PCR primer pair (341F/806R) targeting the V3–V4 variable regions of the 16S rRNA
[26] 16S rRNA PCR Oral rinse samples 248 (51 healthy individuals; 197 OSCC) Total bacterial diversity and relative abundance The PCR primer pair (16SF/16SR) targeting the V3–V4 variable regions of the 16S rRNA
[27] 16S rRNA PCR Unstimulated saliva samples 39 (OSCC) Total bacterial diversity and relative abundance The PCR primers (F515/R806) targeting the V4 region of the 16S rRNA
[28] RNA amplification Oral swab samples 15 (4 OSCC; 11 OSCC-free sites/healthy individuals) Active communities in tumor/tumor-free areas Illumina adapter-specific primers were used to amplify the cDNA generated from mRNA
[29] 16S rRNA PCR Oral rinse samples 38 (12 thyroid nodules as controls; 18 OSCC; 8 OPMDs) Total bacterial diversity and relative abundance The PCR primer pair (347F/803R) targeting the V3–V4 variable regions of the 16S rRNA
[30] 16S rRNA PCR Unstimulated saliva samples 16 (4 healthy controls; 6 OSCC; 6 OPMDs) Total bacterial diversity and relative abundance The PCR primers (F515/R806) targeting the V4 gene region of the 16S rRNA
[43] 16S rRNA PCR Cytobrush (control); Tissue biopsy (OPSCC) 52 (26 OPSCC; 26 controls) P. melanogenica, F. naviforme, S. anginosus Species-specific construct was designed that contained analyzed bacteria sequences
[31] 16S rRNA PCR Stimulated saliva samples 140 (80 non-cancer controls; 60 OSCC) Total bacterial diversity and relative abundance PCR primers were developed for V3–V4 region of the 16S rRNA gene
[32] 16S rRNA PCR Oral swabs from tumor and normal tissues 100 (50 from non-tumor sites; 50 tumors) Total bacterial diversity and relative abundance The PCR primer pair (338F/806R) targeting the V3–V4 variable regions of the 16S rRNA
[49] 16S rRNA PCR Oral rinse samples; Tissue biopsy 272 (136 non-tumor controls; 136 tumor samples) Total bacterial diversity and relative abundance The PCR primer pair (341F/806R) targeting the V3–V4 variable regions of the 16S rRNA
[46] 16S rRNA PCR Saliva samples 994 (495 healthy controls; 499 patients with NPC) Total bacterial diversity and ASVs prevalence The PCR primer pair (341F/805R) targeting the V3–V4 variable regions of the 16S rRNA
[33] 16S rRNA PCR Unstimulated whole mouth fluid 74 (23 healthy controls; 31 OSCC; 20 OPMDs) Total bacterial diversity and relative abundance The PCR primer pair (319F/806R) targeting the V3–V4 variable regions of the 16S rRNA
[34] 16S rRNA PCR Saliva samples; Tissue biopsy 59 (18 non-tumor tissues;18 tumor tissue; 23 OSCC saliva) Total bacterial diversity and relative abundance Adaptor-ligated 16S primers targeting the V4 region of the 16S rRNA gene fragment
[35] 16S rRNA PCR Tissue biopsy samples 48 (24 paracancerous control tissues; 24 tumor tissues) Total bacterial diversity and relative abundance The PCR primer pair (341F/806R) targeting the V3–V4 variable regions of the 16S rRNA
[51] 16S rRNA PCR Unstimulated saliva samples 120 (64 healthy controls; 56 from cancer patients) Total bacterial diversity and relative abundance The PCR primer pair (341F/806R) targeting the V3–V4 variable regions of the 16S rRNA
[36] 16S rRNA PCR Unstimulated saliva samples 24 (8 healthy controls; 16 OSCC) Total bacterial diversity and relative abundance The PCR primer pair (515F/806R) targeting the V4 region of the 16S rRNA was used
[37] 16S rRNA PCR, IHC Tissue biopsy samples 212 (HNSCC) F. nucleatum; gram-negative bacteria A unique PCR primer for F. nucleatum; LPS monoclonal Mouse antibody (clone C8)
[38] 16S rRNA PCR Unstimulated saliva samples 49 (24 healthy controls; 25 OSCC) Total bacterial diversity and relative abundance The PCR primer pair (16SF/16SR) targeting the V3–V4 variable regions of the 16S rRNA
[39] 16S rRNA PCR Tissue biopsy samples 100 (50 paracancerous control tissues; 50 tumor tissues) Total bacterial diversity and relative abundance A PCR primer pair targeting the V3–V4 variable regions of the 16S rRNA was used
[40] 16S rRNA PCR Oral swabs from tumor and normal tissues 232 (116 contralateral normal tissues, 116 tumor tissues) Total bacterial diversity and relative abundance The PCR primer pair (515F/806R) targeting the V4 region of the 16S rRNA was used
F. naviforme, Fusobacterium naviforme; F. nucleatum, Fusobacterium nucleatum; HNSCC, head and neck squamous cell carcinoma; IHC, immunohistochemistry; LPS, Lipopolysaccharide; NPC, nasopharyngeal cancer; OPMDs, oral potentially malignant disorders; OSCC, oral squamous cell carcinoma; P. gingivalis, Porphyromonas gingivalis; P. melanogenica; Prevotella melanogenica; PCR, polymerase chain reaction; rRNA, ribosomal RNA; S. anginosus, Streptococcus anginosus; S. gordonii, Streptococcus gordonii.

2.1. Oral Microbiota and OPMDs

The relationship between oral microbiota and OPMDs was assessed in 6 studies. Schmidt et al. found that pyhla Firmicutes and Actinobacteria were significantly decreased in the “pre-cancer” lesions including mild, moderate and severe oral epithelial dysplasia compared to the healthy controls [41]. In agreement, Lee et al. found that the epithelial precursor lesions (e.g., dysplasia) had less abundant genera such as Bacillus, Enterococcus, Parvimonas, Peptostreptococcus and Slackia [22]. In contrast to these findings, Gopinath et al. showed that Megaspheara, unclassified Enterobacteriae, Prevotella, and Salmonella were more expressed in oral leukoplakia compared to healthy controls. Additionally, the authors reported a clear overlap between the whole mouth fluid bacteriome of leukoplakia and oral cancer [33]. Similarly, Hashimoto et al. found a significantly higher level of the genus Streptococcus in oral leukoplakia than in OSCC [30]. This was further supported by Ganly et al., who showed that Genera Fusobacterium and Veillonella were significantly increased in OPMDs [29]. Mok et al. demonstrated that phyla Firmicutes and Bacteroidetes had more OPMD related bacteria groups compared to healthy and cancer groups [42].

2.2. Oral Microbiota and OSCC

Recently, phyla of Actinobacteria and Cyanobacteria were decreased in OSCC (p = 0.021 and p = 0.013, respectively) compared to paracancerous tissue from the same patients [35]. Yang et al. showed that only Fusobacterium was increased while Streptococcus, Haemophilus, Porphyromonas and Actinomyces were all decreased (p < 0.0001) in OSCC compared to healthy controls [26]. In another recent study, genera Peptostreptococcus, Fusobacterium, Alloprevotella, and Capnocytophaga were all increased in contrast to decreased Rothia and Haemophilus (p < 0.05) in OSCC compared to non-cancer controls [31]. In agreement, OSCC patients had elevated levels of Peptostreptococcus, Fusobacterium, Alloprevotella and Capnocytophaga, while Rothia Streptococcus and Veillonella were all decreased (p < 0.05) [32]. Supporting these findings, genera Prevotella, Fusobacterium and Alloprevotella were increased in OCSCC (p = 0.019, p = 0.016 and p = 0.011, respectively) compared with normal control patients. Interestingly, these genera showed a trend to increase from healthy controls to OPMDs with their highest level seen in OSCC [29]. In contrast, Streptococcus was found decreased in OSCC [29]. Torralba et al. found a higher abundance of Prevotella in saliva from OSCC patients [34]. Hashimoto et al. demonstrated that phylum Bacteroidetes and genus Solobacterium had higher relative abundance in the OSCC group (p < 0.05) than patients with oral leukoplakia [30].
Granato et al. conducted a comparison of oral microbiota in OSCC patients before (L0) and after (L1) surgical excision [36]. Compared with the healthy controls, genera Abiotrophia, Acinetobacter, Alloscordovia, Dialister, Gemella, Granulicatella, Peptostreptococcus, Selenomonas, Staphylococcus, and Stenotrophomonas were considerably higher in both L0 and L1 patients. On the other hand, genera Veillonella, Rothia, Moryella, Kingella, and Centipeda were reduced in both groups. However, L1 patients had higher Alloscordovia and reduced Veillonella levels compared to L0 patients [36]. Very recently, Su et al. identified significant alterations in the bacterial diversity and relative abundance of specific oral microbiota with the most profound finding was the enrichment of Fusobacterium and the loss of Streptococcus in the OSCC [40]. Furthermore, authors suggested that genera Streptococcus, Fusobacterium, Peptostreptococcus, Campylobacter and species Streptococcus pneumoniae and F. Nucleatum (strain CTI-2) could be potential biomarkers for cancer patients [40]. The studied oral microbiota with their relative abundance in OSCC are depicted in Figure 3.

This entry is adapted from the peer-reviewed paper 10.3390/cancers14010046

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