2.1. The Challenge of Functional Foods
Functional foods are foods that surpass classic nutrition and exert beneficial effects connected to their consumption [
88] with optimization of markers related to the disease.
Undoubtedly, economic, political and social trends, together with technological advantages, lead people to migrate to towns [
89]. As humans become more urban, the society meets the negative impact of urbanization due to the changing lifestyle. Living-conditions, restricted green space, scant sanitation, fat-food eating habits affect human health. Efforts have been made to prevent human disease development. Education and increased information on health issues make people shift their habits to more sustainable healthy solutions. In this vein, during the last decades, functional foods have gained particular attention, due to their relationship to nutrition and health [
90].
Without any doubt, healthy nutrition preserves the intestinal ecosystem and beneficially affects metabolic regulation [
91]. From another aspect, this interest in functional foods has played a significant role in the adoption of healthy habits, due to the increasing consumer health concerns [
90,
92].
Fermented foods were known since ancient times. Fermentation seems to be firstly used in the fertile crescent area of the Middle East in 6000 B.C. [
92]. The term ‘acid milk’ was also mentioned in the Bible [
90]. For centuries, the fermentation process was pragmatically used for food preservation and production in every culture. People foremost understood that fermentation enhance food shelf-life and improve organoleptic characteristics of foods [
93]. As known, fermented foods contain edible microorganisms whose enzymes hydrolyze food polysaccharides, proteins and lipids to non-toxic products. As a result, a food transformation is taking place and ingredients beneficial for human health, such as SCFAs, are produced [
94]. During the last years, higher throughput biotechnologies serve to promote the fermented food industrial production in a large scale and genome sequencing provided a global picture on the biodiversity of microorganisms in food fermentation processes [
93]. New technologies tailor food with important characteristics through overexpression or disruption of respective metabolic genes [
93]. Moreover, microbial interplay in the fermented food matrix affects food quality and safety, organoleptic properties and finally food digestibility and beneficial modulation of the host immune system [
95].
A plethora of fermented products was developed, ranging from drinks to foods in every culture; kimchi in Asia, cassava in West Africa, kombucha tea in China, kefir yoghurt in Caucasian and Balkan countries, sauerkraut, pickles, apple vinegar in most Western countries.
Nevertheless it is notable that most research focuses on the development of fermented dairy products. Metchnikoff was enrolled in a precursory research in the field of dairy fermentation in 1908. In his thesis under the title
“The Prolongation of Life” evaluated the properties of lactic bacteria, specifically
Lactobacillus delbrueckii subsp.
bulgaricus and the longevity of Bulgarian farmers attributed to the consumption of fermented dairy products. Probiotics seem to prevent and reduce symptoms of multiple diseases, such as infections, autoimmune and allergic diseases and many others [
96,
97]. Even they are used as an adjunct therapy they maintain the balance of the intestinal microbiota [
98].
Nevertheless, the country supporting vigorously the use of labeling in functional food products is Japan [
99]. Since 1991, under the Foods for Specialized Health Use (FOSHU) label the Ministry of Health, Labor and Welfare in Japan issued a functional food regulation and launched their use in the market [
99]. More than 200 functional products were branded under FOSHU legislation. In this vein, USA issued a regulation called “
Foods with Function Claims” based on the Dietary Supplement Health and Education Act system (DSHEA) in 2015 [
100]. This system seems to be more flexible in terms of health claims and in use of clinical protocols and thus launched functional foods market all over the world [
100]. Registration of clinical studies must be under a University Hospital Medical Information Network (UMIN) protocol in both systems. While the FOSHU requires evidence that shows the reason for the minimum dosage from a dose-dependent study, as well as striking evidence based on the ways of action of the active compounds and the analytical methodology used, the American regulation system embeds on clinical studies proving a significant effect of functional foods when compared with a placebo intake group [
100].
Functional food ingredients, such as probiotics, prebiotics, synbiotics and fermented as well, could amend the good condition of oral cavity and the activity of the gastrointestinal tract in a beneficial way. It is actually more than an axiom that their healthful effects are attributed to probiotic lactic acid bacteria (LAB) and
Bifidobacterium [
91].
The major effect of their intake is associated with the improvement of the host intestinal immune system through the ‘barrier effect’ and alleviation of the gut inflammatory response [
97] through the production of immunoglobulin A (IgA) and balance between pro-inflammatory and anti-inflammatory cytokines [
101]. It seems that diabetes is a disease related to the modern nutritional habits and lifestyle. Consumer’s interest in functional foods has increased due to their connection to health issues, such as the balance of gut microbiota and stimulation of the immune system [
102].
As stated before, PRRs are of accrue importance for the deployment of the innate immune response [
103]. Considering the above, therapeutic modulation of the gut microbiome via functional foods with probiotic properties may slow down the development of diabetes disease and its complications through a beneficial balance of the microbiota [
104]. Knowledge gathered from animal models and human studies have shown that foods enriched with probiotics may impede postprandial hyperglycemia and adipose tissue and lipid metabolism occurring during diabetes inflammatory processes [
104]. Furthermore, they seem to regulate dyslipidemia and insulin resistance status and reduce oxidative stress and inflammation [
104]. In addition, they modify and regulate in a beneficial way the development of long-term diabetes complications, such as cardiovascular disease, neuropathy, nephropathy and retinopathy and oral manifestations [
17,
105]
Many studies have examined the influence of specific eating patterns to the gut microbiome [
106,
107,
108]. Animal studies stated that several
Lactobacillus and
Bifidobacterium species could prevent or even impede the severity of T2DM [
109]. Additionally, studies in humans aimed to clarify metabolic shifts, oxidative stress and inflammation linked to diabetes [
109].
Meta-analysis studies of multiple control trials stated that probiotics improved the fasting plasma glucose (FPG) and the glycosylated hemoglobin (HbA1c) in T2DM [
110]. Similarly, probiotics given in people developing T2DM improve glycemic control [
65].
Without any doubt, unraveling and exploring the involved microbial patterns and getting a better knowledge of the microbiota profile should clarify their role in health and disease and should lead to the development of more effective or even alternative therapeutic strategies and nutritional habits.
2.2. Animal Studies
A great amount of work has been dedicated in unveiling the health benefits of functional food ingredients, such as prebiotic fibers and probiotics on mechanisms regulating immunity system via modulation of the intestinal microbiota in diabetic animal models. There is an increasing number of studies concerning how functional foods can improve or be supplemented as an auxiliary treatment in metabolic disorders, such as obesity, atherosclerosis or diabetes. Functional foods seem to have additional physiological benefits and contribute to the reduction of the risk of chronic diseases beyond their basic nutritional functions [
111,
112].
The use of animal models in the study of diabetes, especially in the last decade, is a common practice [
113]. The most widespread animals that are equipped in a variety of experimental protocols belong to the family of rodents, mainly mice and rats because they have a very similar genetic background to that of humans, as well as a short lifespan. Furthermore, they are highly productive, less expensive and easily treated by scientists and researchers than other animal models [
114].
Xue et al. [
115] employed T2DM rats and investigated the potential health effects of propolis. Interestingly, propolis led to lower fasting blood glucose (FBG), reduced insulin resistance and improved intestinal mucosal injury in ileum tissue. Microbiota of diabetic rats were normalized with predominant being the
Lactobacillus genera that consists mainly of probiotic bacteria, whereas
Enterococcus,
Clostridium,
Turicibacter and
Arthrobacter were lower compared to the control group [
115].
Another interesting study underlined the effects of pistachio nuts supplementation on amelioration of inflammation by lower inflammatory foci, IL-1β, CCL-2 gene expression and inflammatory markers (TNF-α and IL-1β) in Wistar rats under high fat diet (HFD). These obese pistachio-supplemented rats exhibited lower
Firmicutes/
Bacteroidetes ratio and increased health-related bacteria, such as
Parabacteroides,
Dorea,
Allobaculum,
Turicibacter,
Lactobacillus and
Anaeroplasma, while inflammation-associated genera like
Oscillospira, Desulfovibrio, Coprobacillus and
Biophila were decreased [
116]. The health benefit of pistachios on the microbiome of T1DM rats has also been studied by our group [
117]. In healthy animals receiving pistachios lactobacilli and bifidobacteria were found in increased numbers, as well as increased populations of the
Firmicutes phylum were reported, but decreased amounts of
Bacteroidetes phylum were recorded.
Dietary supplementation on rats in HFD with barley or malt revealed decreased ratio of colonic
Firmicutes/
Bacteroidetes and increased numbers of
Actinobacteria and
Verrucomicrobia after barley supplementation. Furthermore,
Akkermansia,
Ruminococcus,
Blautia,
Biophila,
Turicibacter and
Roseburia genera were elevated after barley malt intake and shed some light in the manner of optimizing the health benefits of whole-brain barley products [
118]. Cornstarch diet has been also associated with benefits in alleviating the adversity of diabetes mellitus. Studies that were performed in STZ-induced diabetic rats showed increased diversity of gut microbiota. It was observed a decrease of
Actinobacteria and
Bacteriodetes with increased abundance of
Firmicutes [
119,
120]. In another similar study, the RA of these 6 OTUs,
Christensenellaceae R-7 group,
Prevotella 9, an unknown species of the
Prevotellaceae family,
Prevotellaceae UCG-001 and
Ruminococcaceae UCG-005, and
Ruminococcus 1, were all increased after starch feeding. Starch feeding also led to a reduction in RA of an uncultured species of the
Erysipelotrichaceae family,
Escherichia-
Shigella,
Klebsiella, an unknown species of the
Peptostreptococcaceae family and
Turicibacter [
121].
Sane et al. [
122] tested the effects of lone human milk administration in nod mice and underlined the prevention of diabetes onset and progression with elevated fecal
Bifidobacterium and
Akkermansia abundances and lower cecal
B. fragilis and
E. coli. Cecal and colonic
B. vulgatus were enhanced by human milk intake [
122].
Shikano et al. [
123] used Green loofah
L. cylindrica homogenate (LH) and fermented LH (FL) with
L. lactis subsp.
lactis Uruma-SU1 and
L. plantarum Uruma-SU4, isolated from algal beach casts in a dietary supplementation experiment on a specific pathogen free (SPF) mice Kwl: ddY mice in high-fat diet. After FL consumption, TC, LDL-C and the ratio LDL-C/HDL-C were lower, whereas cecal
L. johnsonii and
C. disporicum were increased [
123].
STZ-induced diabetic Wistar rats in high-fat diet (T2DM) were supplemented with fermented milk that was produced by inoculation of skim milk with probiotic cultures,
L.
rhamnosus NCDC 17 and
L. rhamnosus GG, at 1% (
v/v) [
124]. Both probiotic treatments increased the population of total bacteria.
L. rhamnosus NCDC 17 supplementation group had higher populations of
E. rectale-
C. coccoides,
Bacteroides, lactobacilli and bifidobacteria. LGG and
L. rhamnosus NCDC 17 decreased FGB and increased insulin levels and had a positive effect on glycosylated hemoglobin [
124]. Free fatty acids levels and lipid profile were improved after HFD +
L. rhamnosus NCDC 17 administration and triglycerides were reduced, whilst both probiotics increased HDL-C levels. Finally,
L.
rhamnosus NCDC 17 supplementation decreased expression levels of TNF-α and IL-6 genes and increased mRNA of the adiponectin gene [
124].
A non-dairy fermented product with a combination of specific LABs and non-bitter beer yeast was administered to Zucker diabetic fatty (ZDF) rats, a model for T2DM associated with obesity [
125]. Decreased glucose absorption was observed in treated group, along with decreased blood glucose. Microbial diversity was enriched after administration and
Firmicutes,
Saturella,
Proteus,
Alistipes,
Anaerococcus were increased in the supplemented group, while
Streptococcacae,
Anaerococcus and
Streptococcus,
Barnesiella and
Blautia were enriched in the control group. Hu et al. [
126] showed that mixed fermentation by
L. fermentum and
Saccharomyces cerevisiae enhanced DNJ extraction efficiency from mulberry leaves. When implemented to STZ-induced diabetic mice, the extract seems to have relieved gut dysbiosis by promoting the growth of
Lactobacillus,
Lachnospiraceae NK4A136 group,
Oscillibacter,
Alistipes and
Bifidobacterium [
126]. At the same time, the growth of
Ruminococcaceae UCG-014,
Weissella,
Ruminococcus,
Prevotellaceae Ga6A1 group,
Anaerostipes,
Klebsiella,
Prevotellaceae UCG-001 and
Bacteroidales S24-7 group were significantly suppressed [
126].
The efficacy of probiotics in diabetes relies on their ability to lower FBG and insulin levels in preclinical setting, as well as human trials [
127]. VSL#3 is a probiotic product available in the market that contains strains of
Bifidobacteriaceae (
B. longum, B. infantis and
B. breve),
Lactobacillaceae (
L. acidophilus,
L. paracasei,
L. delbrueckii subsp.
Bulgaricus and
L. plantarum) and
S. thermophilus. When it was administrated to the non-obese diabetic (nod) mice model, where T1DM occurs as a result of insulitis, ameliorated diabetes progression took place, which was accompanied by reduced degree of insulitis in histological examination [
128]. Inflammation markers were decreased as there was an inhibition of IL-1β expression and also enhancement of indoleamine-2, 3-dioxygenase (IDO) and IL-33 was documented [
128]. An interesting outcome included the reduced differentiation of T-helper cells in autoimmune sites of the pancreatic lymph nodes (PLN), the site where the autoimmune response is regulated in T1DM [
128]. The potential health benefits of probiotic administration were maximized with the increased
Lactobacillacae, clostridia and
Rikenellaceae after VSL#3 treatment and decreased abundance of
Bacteroidetes strain S24-7 [
128].
Other animal models, such as STZ-induced diabetic Wistar rats in HFD (T2DM), were utilized in exploring the supplementation with
L. plantarum (probiotic), inulin (prebiotic) or in combination (symbiotic) [
129]. Probiotic and synbiotic treatment led to an increase of
Firmicutes phylum and of
Lactobacillales family, while
Clostridiales, Enterococcaceae and
Bacteroidales were decreased [
129]. Prebiotic treatment increased
Streptococcaceae classification [
129]. All treated groups were dominated with
Lactobacillus genera and were characterized by enhanced
Lactobacillus/Firmicutes ratio, whilst only the synbiotic supplementation increased specifically the probiotic
L. plantarum population [
129]. An improvement of oxidative stress status in hippocampus and prefrontal cortex, as well as a neuropsychological improvement and reversion of cognitive impairment were observed after symbiotic administration, underlying the variety of health benefits that probiotics can offer [
129].
L. rhamnosus BSL and
L. rhamnosus R23, when administered in STZ-induced diabetic Sprague-Dawley rats, led to elevated LAB levels after 30 days of probiotic supplementation and improved glucose tolerance and glucose control, as FBG was significantly reduced. After probiotic treatment, there was a decrease in TC and in atherogenic index [
130].
Tian et al. [
131], and Li et al. [
132] used
L. paracasei subsp.
paracasei G15 and/or
L. casei Q14 isolated from dairy food in STZ-induced diabetic Wistar rats in high-fat diet (T2DM) and concluded that glucose tolerance was restored and TC and triacylglycerol level was suppressed after 6 weeks of probiotic administration [
131,
132]. Hyperinsulinemia was ameliorated with insulin and glucagon levels being lower after probiotic ingestion and concentration of antidiabetic hormones GLP-1 and PYY was augmented after probiotic supplementation [
131,
132]. Furthermore, plasma LPS was reduced and a healthier intestinal microenvironment was achieved by improving intestinal barrier structure. The epithelial and mucosal structure was normalized and consisted of more integral mucosa [
131,
132]. Interleukins were also affected; specifically, IL-1β, IL-8 and IL-6 levels were diminished. The relative abundances of
Lactobacillus,
Bifidobacterium,
Clostridium leptum,
Bacteroides and
Prevotella were increased after probiotic treatment [
131,
132].
Similar findings were observed in STZ-induced diabetic C57BL/6J mice in high-fat diet (T2DΜ) supplemented with
L. casei CCFM419 [
133]. Microbiota modulation was conducted with increased
Allobaculum and
Bacteroides genera and
Bacteroidetes phylum abundances and decreased
Firmicutes [
133]. Post-probiotic ingestion, FBG and HBA1c and leptin levels were lower, 2-h postprandial blood glucose was reduced, and insulin sensitivity was improved by decreased fasting insulin concentration, as well as improvement of HOMA-IR value was noticed [
133]. Inflammation was ameliorated with decreased levels of TNF-α, IL-6 and IL-10 [
133]. Lipid control was conducted with reduced LDL-C and increased HDL-C levels [
133]. Finally, there was a recovery of impaired islet cells and the expression of mRNAs of PI3K and GS, concerning the insulin resistance, was increased and GSK-3β mRNA expression was decreased [
133].
L. casei Zhang, when administrated in STZ-induced diabetic Sprague-Dawley rats in high-fat sucrose diet (HFS) (T2DΜ), led to more abundant cecal
Bifidobacterium and
Lactobacillus genera and lower levels of
C. coccoides–
E. rectale group and
C. scindens members [
134]. Probiotic supplementation led to reduced endotoxin LPS production that had been induced by STZ and the onset and development of hyperglycemia in both fasting and postprandial 2 h blood glucose levels and OGTT levels was reversed [
134]. What is more, pro-inflammatory cytokines (IFN-c and TNF-α) was inhibited after probiotic administration [
134].
L. rhamnosus CCFM0528 provoked increased
Bacteroidetes and decreased
Firmicutes in phyla level and elevated
Bifidobacterium,
Lactobacillus,
Allobaculum and
Bacteroides genera in STZ-induced diabetic C57BL/6J mice in high-fat diet (T2DM) accompanied with amelioration of insulin resistance, glucose tolerance, FBG and postprandial 2-h blood glucose; TNF-α and IL-6 production were decreased and GLP-1 was increased [
135].
All of the above-mentioned studies presented in detail in , provided similar results and reach to the same conclusion. Prebiotics, as well as probiotics and foods enriched with such ingredients can promote gut health via enhancement of the presence of beneficial bacteria genera and accumulation of advantages for the host immune system and metabolic regulation.
2.3. Human Studies
A range of food supplements are consumed by various groups of people with the aim of improving health. Several clinical studies have been conducted so far, especially with probiotics per se. There are also a small number of studies in which food products enriched with specific beneficial microbes are examined. These foods include mainly fermented milk products.
Allen et al. [
136] evaluated the safety of a bacterial dietary supplement for the prevention of atopy in infants in a randomized, double-blinded, placebo-controlled trial. Two strains of lactobacilli (
L. salivarius CUL61 and
L. paracasei CUL08) and bifidobacteria (
B. animalis subsp. lactis CUL34 and
B. bifidum CUL20) with a total of 1 x 10
10 colony-forming units were administered daily to women during the last month of pregnancy and to infants aged 0–6 months, with beneficial results [
136].
Kassaian et al. [
137] assessed the effects of probiotics and synbiotics on metabolic syndrome in individuals with prediabetes. One hundred and twenty adults with prediabetes were enrolled in a double-blind, placebo-controlled randomized parallel-group clinical trial [
137]. Participants were randomized to a multi-species probiotic or inulin-based synbiotic or placebo. The potential benefits of using probiotic and synbiotic for metabolic syndrome management in prediabetes have been supported by the results, which provided an important strategy to combat metabolic syndrome-associated diseases [
137].
Khalili et al. [
138] divided forty patients with T2DM (
n=20 for each group) into intervention (probiotic) and placebo groups. The intervention group received a daily capsule containing 10
8 cfu of
L. casei for eight weeks [
138]. The patients in placebo group took capsules containing maltodextrin for the same time duration. In comparison with the placebo,
L. casei supplementation significantly increased SIRT1 and decreased fetuin-A levels at the end of the trial in a way that improved glycemic response in subjects with T2DM [
138]. Affecting the SIRT1 and fetuin-A levels introduced a new known mechanism of probiotic action in diabetes management [
138].
Medina-Vera et al. [
139] studied the effects of a functional food-based dietary intervention on fecal microbiota and biochemical parameters in patients with T2DΜ. In a placebo-controlled, randomized, double-blind study 81 patients with T2DM were divided into two 3-month treatment groups: one following a reduced-energy diet with a dietary portfolio (DP) comprising high-fiber, polyphenol-rich and vegetable-protein functional foods, the other taking a placebo (P) [
139]. Patients with T2DΜ exhibited intestinal dysbiosis characterized by an increase in
Prevotella copri [
139]. Dietary intervention with functional foods significantly modified fecal microbiota compared with P group by increasing alpha diversity and modifying the abundance of specific bacteria, independently of antidiabetic drugs [
139]. There was a decrease in
P. copri and an increase in
Faecalibacterium prausnitzii and
Akkermansia muciniphila, two bacterial species known to have anti-inflammatory effects [
139]. The DP group also exhibited significant reductions in areas under the curve for glucose, TC and LDL-C [
139].
Sabico et al. [
140] studied the effects of 6-months multi-strain probiotics supplementation in T2DM in a randomized, double-blind, placebo-controlled trial and concluded in the beneficial role of probiotics in inflammation, promising adjuvant anti-diabetes therapy [
140].
Gut bacterial translocation to the blood may play an important role in the development of insulin resistance in T2DM. Sato et al. [
141] investigated whether probiotics could reduce bacterial translocation and cause changes in the gut microbiota, in two groups of Japanese; the probiotic group that consumed
Lactobacillus casei strain Shirota-fermented milk, and the control group administered no probiotics [
141]
. Probiotic administration reduced bacterial translocation and altered the gut microbiota in Japanese patients with T2DM [
141].
In a randomized, double-blind, placebo-controlled study, participants were assigned into two groups: a probiotic group, consuming fermented milk containing
L. acidophilus La-5 and
B. animalis subsp
lactis BB-12 (10
9 colony-forming units/d, each) and a control group, consuming conventional fermented milk [
142]. Probiotic consumption improved the glycemic control in T2DM subjects. However, the intake of fermented milk seems to be involved with other metabolic changes, such as decrease in inflammatory cytokines (TNF-a and resistin) and increase in acetic acid [
142]. Furthermore, dietary intervention by consumption of yogurt with live probiotics and other dairy products seems to improve the antioxidant status and FPG levels in T2DM patients [
143,
144].