The hemostatic system is finely regulated to achieve continuous blood circulation and prevent blood loss based on the balance between blood coagulation and fibrinolysis (blood clot degradation) [1–3]. The zymogens in this system contribute to autonomous regulation through spatiotemporal activation in response to physiological demands or stimuli [4,5]. Defects in the hemostatic system lead to bleeding or thrombotic disorders [6–9]. To date, several drugs have been developed to treat diseases related to or resulting from such defects in the hemostatic system. Particularly, antithrombotics, which inhibit blood clot formation, and thrombolytics, which accelerate the degradation of blood clots, are widely used to treat, control, or prevent thrombotic complications such as ischemic diseases of the heart, brain, lungs, and kidneys [10–14]. Despite several efforts to elaborate the use of these drugs, a significant population of treated patients suffer from bleeding events, which are occasionally severe or fatal [11,15–17]. Thus, it is believed that antithrombotics and thrombolytics are associated with an inherent inevitable bleeding risk [18].

In 1993, we initiated an investigation to identify a bioactive compound that controls the hemostatic system, particularly a small molecule that promotes endogenous fibrinolysis [4]. Our theory was that a molecule that modulates the physiological process will achieve a therapeutic effect without excessive bleeding risk. Using several systems to screen random microbial metabolites, we discovered multiple compounds with a novel activity, zymogen modulation [4]. Stachybotrys microspora triprenyl phenol (SMTP) is a class of identified compounds that modulate the conformation of plasminogen to promote plasminogen binding to fibrin or the cell surface [4,9]. SMTP is a large family of metabolites from S. microspora, comprising more than 60 congeners (Table S1) [19,20]. In agreement with our hypothesis, SMTP promotes thrombolysis without causing excessive bleeding [21–24]. Subsequently, we observed an unexpected additional function of SMTP, the inhibition of soluble epoxide hydrolase (sEH), which is a key enzyme that controls inflammation [25]. Along with the radical-scavenging activity inherent in the SMTP structure, the combination of thrombolytic and anti-inflammatory actions of SMTP played a key role in the treatment of ischemic stroke in several models of rodents and monkeys [21,22,24,26–30].

Origin of SMTP

Background: Thrombotic and Thromboembolic Disorders and Treatment

Thrombotic and thromboembolic disorders are ischemic diseases that occur due to vascular occlusion by a blood clot formed in situ (thrombosis) or in an upstream vessel (embolism) that occludes a vessel at a downstream site [18,31,32]. The clot shuts off the supply of blood and oxygen, resulting in the death of the affected tissue. Thrombosis/thromboembolism can occur in both arteries and veins. Arterial thrombosis is the cause of most cases of heart attack (myocardial infarction) and ischemic stroke (brain infarction) [18]. Venous thrombosis/thromboembolism includes deep vein thrombosis, which accounts for most cases of pulmonary embolism (pulmonary infarction) [31]. These cardiovascular diseases constitute the most common causes of death in the developed world.

Atherosclerosis, or the rupture of an atherosclerotic plaque, is one of the most influential triggers for arterial thrombosis [31,33,34]. Atherosclerosis develops in the vessel wall through an accumulation of lipid deposits, mediated by macrophage foam cells that accumulate large amounts of cholesterol derived from lipoproteins such as low-density lipoprotein (LDL) that is oxidized in the vessel wall. Upon rupture of an atherosclerotic plaque, platelets rapidly aggregate to form a hemostatic plug through binding to collagen and von Willebrand factor. The aggregated platelets are activated to release several factors that promote the coagulation cascade and platelet aggregation/activation [18].

The coagulation cascade primarily consists of a sequential process of protease zymogen activation that results in the formation of fibrin and thrombus [2]. The exposure of coagulation factor VII to tissue factor, a transmembrane cell surface glycoprotein, is a pathophysiological trigger for the initiation of the coagulation cascade [2]. The hemostatic thrombus can be removed via another cascade reaction, the fibrinolytic system [35]. In both systems, the activation of protease zymogens is a key feature that regulates the local propagation of each event. The regulatory mechanism involves the instant response of the zymogen conformation to pathophysiological stimuli, triggering coagulation and fibrinolysis; the changes in conformation affect the localization and proteolytic activation of zymogens [4].

Generally, drugs targeting platelets (which inhibit platelet aggregation, resulting in the inhibition of blood clot formation) are used to treat arterial thrombosis [36], and venous thrombosis is treated with drugs targeting coagulation cascade proteases [37]. However, agents targeting the coagulation system are increasingly used in arterial disease, as evidenced by the COMPASS trial, where patients with stable atherosclerotic vascular disease were treated with a combination of Xa inhibitor and aspirin [38,39]. Although these drugs treat or prevent arterial and venous thrombosis/thromboembolism, a significant inherent risk of bleeding limits their use [18]. Another important class of drugs used to treat thrombotic/thromboembolic disorders is thrombolytics, such as tissue-type plasminogen activator (t-PA), which selectively cleaves plasminogen to form plasmin, a protease that degrades fibrin, the major component of blood clots [40]. However, the timing of thrombolytic intervention crucially affects the outcome: the earlier, the better. For example, t-PA therapy is beneficial only when used within 3 to 4.5 h of ischemic stroke onset, and the risk of intracranial hemorrhage increases significantly when used beyond this time window [41]. Thus, no drug that prevents blood coagulation or promotes thrombolysis without causing bleeding has been developed to date. Nevertheless, statins, a class of drugs that lower LDL cholesterol levels and suppress or retard atherosclerosis, are unique in that they reduce the risk of thromboembolic events such as heart attack and ischemic stroke without elevating the risk of bleeding [42]. However, statins do not directly treat thrombotic/thromboembolic diseases.

Search for a Bioactive Compound that Enhances Physiological Thrombolysis

One of the authors (K.H.) was involved in the identification of inhibitors of cholesterol biosynthesis and macrophage foam cell conversion led by Akira Endo, who discovered the first statin drug, ML-236B (compactin), and the second, monacolin K (lovastatin) [42]. Although we discovered several interesting molecules over more than 10 years of research, none of these compounds was developed further. By the early 1990s, several clinical trials had proven the clinical benefit of statin drugs for reducing LDL cholesterol, cardiovascular disease incidence, and mortality [42,43]. Meanwhile, we explored an approach to discover a new drug that directly controls thrombotic/thromboembolic disease through a hitherto unsought mechanism.

The theory behind our investigation was that a compound that enhances plasminogen binding to fibrin or the cell surface would promote physiological fibrinolysis, serving as an ideal approach to achieve regulated thrombus degradation. The basis of this theory was that (i) binding of plasminogen to fibrin or the cell surface is crucial for its activation to plasmin [44]; (ii) lipoprotein(a), a risk factor for cardiovascular diseases and atherosclerosis [45], competes with plasminogen for binding to fibrin and the cell surface [46]; and (iii) regulated fibrinolysis can occur without bleeding. Although this theory has no solid basis, especially regarding whether a small molecule could mediate protein (plasminogen)-to-protein (fibrin or receptor) binding, we started a pilot project to search for a molecule that enhances the binding of plasminogen to monocytoid cells (screening 1). Fortunately, a screening of random microbial cultures soon yielded several hits, including complestatin and its analog [47,48]. On the basis of these results, we expanded the project to screen for compounds that enhance plasminogen binding to fibrin (screening 2), cell-mediated fibrinolysis in plasma (screening 3), vascular endothelial cell surface generation of plasmin (screening 4), and reciprocal activation of plasminogen and single-chain urokinase-type plasminogen activator (scu-PA or prourokinase) (screening 5). These investigations led to the discovery of novel small molecules such as SMTP family, plactin family, and surfactin family compounds (see Table S1 and references therein). SMTP was discovered in screening 2. Notably, several compounds in these studies act through a unique mechanism, zymogen modulation [4].

Discovery of SMTP

Screening 2 identified several hits. Of these, an extract of a culture of S. microspora IFO 30018 (current repository code NCBI 30018) showed activity to enhance plasminogen-fibrin binding; however, isolation of the active principle was challenging, as the activity was distributed over a wide range of retention times with a turtle shell-like UV absorption peak, according to HPLC analysis. Initially, we believed that the mobile phase conditions were insufficient to achieve clear resolution; however, we subsequently realized that the broad turtle shell-like peak was due to several overlapping peaks with similar UV spectra. Repeated preparative HPLC fractionations corresponding to a relatively sharp convex shape in the turtle shell-like area yielded the first SMTP congener, staplabin (Table S1) [49]. The name staplabin was derived from Stachybotrys plasminogen-binding stimulator. Following the isolation of staplabin, we isolated two minor analogs, SMTP-1 and SMTP-2 (Table S1) [50]. Additionally, we developed a method to isolate multiple congeners by changing the composition of the culture medium to alter the turtle shell-shaped pattern to a truly peaked pattern. To clearly define each anticipated congener that would follow staplabin, we used a new designation, consisting of SMTP and a number.

SMTP Congeners

The structure of the SMTP congeners consists of a chromanlactam moiety, an isoprene side chain, and a side chain linked to the nitrogen atom of the chromanlactam moiety (N-linked side chain) (Figure 1). Using the newly devised culture conditions mentioned above, we discovered six additional SMTP congeners, SMTP-3 to SMTP-8 (Table S1) [51,52]. These differed with respect to the N-linked side chains, all of which constituted known a-amino acids. Therefore, we hypothesized that the N-linked side chains originated from amino acids present inside the cell or in medium. To test this possibility, we used a poor medium in which amine compounds were restricted but which contained a specific amine to be incorporated as the N-linked side chain [53]. This precursor amine-feeding method enabled us to produce large amounts (up to 10 g L⁻¹ of culture) of a specific SMTP congener quite selectively. This is a huge achievement, considering that the yield of staplabin was only 24 mg L⁻¹ [49]. Furthermore, selective incorporation of the fed amine into the N-linked side chain was confirmed by the robust incorporation of rare amines such as D-amino acids following feeding [54]. Several SMTP congeners were isolated using a fermentation method that was fed with the precursor amine [19,20,25,55–59] (see Table S1 for details). Furthermore, some analogs differing in the isoprene side chain structure have been identified by microbial conversions of SMTP-0, which has a hydrogen atom as the N-linked side chain (Figure 1) [60].

Figure 1. Structures of key Stachybotrys microspora triprenyl phenol (SMTP) congeners and substituted chromanlactam core unit.

Structure of SMTP

The structures of the SMTP congeners were elucidated using a combination of spectroscopic methods, including NMR and MS. The initial absolute stereochemistry was proposed utilizing NMR techniques using the simplest congener, SMTP-0 (Figure 1), and its derivatives [55]. The results obtained were consistent with the 8S, 9S configuration. However, a recent investigation that utilized a combination of NMR and crystallographic techniques proved an 8S, 9R configuration for an analog of SMTP, stachybotrin C (Table S1) [61,62]. Considering that stachybotrin C can be produced by feeding S. microspora with the precursor amine and that SMTP is produced from a common precursor, pre-SMTP (see Section 2.6), we conclude that all SMTP congeners exhibit an 8S, 9R configuration, and herein revise their stereochemistry (Figure 1).

Biosynthesis of SMTP

To elucidate the mechanism underlying the generation of a wide variety of SMTP congeners, we searched for a biosynthesis precursor of SMTP. We hypothesized that such a precursor might accumulate and disappear before and after amine feeding, respectively. We isolated two candidates: LL-Z1272b (ilicicolin B) and a novel compound. The latter, designated pre-SMTP, has no lactam but two aldehydes in the chroman moiety (Figure 2) [59]. Pre-SMTP spontaneously reacts with primary amines to yield an SMTP congener with the amine as an N-linked side chain. Thus, various SMTP congeners can be nonenzymatically derived from pre-SMTP. Incorporating relevant information from other studies [63–65], we propose an overall pathway for SMTP biosynthesis, as presented in Figure 2.

Figure 2. Putative pathway for SMTP biosynthesis. The synthetic pathway for SMTP-type and phenylspirodrimane-type triprenyl phenols may diverge, through differential cyclization mechanisms, from LL-Z1272b (ilicicolin B), a key intermediate synthesized from farnesyl diphosphate and orsellinic acid [63]. Pre-SMTP forms various SMTPs via a nonenzymatic reaction with an amine. Stachybotrydial [66] may yield a wide variety of phenylspirodrimanes via a similar mechanism, because aromatic o-dialdehydes (shaded in light blue) are highly reactive with an amine [67,68]. The precursor amine feeding method can be applied to selectively synthesize a phenylspirodrimane of interest [69] using Stachybotrys sp. F462, which forms stachybotramide, a phenylspirodrimane-type triprenyl phenol [70].

Refer to doi: 10.3390/ijms22020954 for references and Table S1.

This entry is adapted from the peer-reviewed paper 10.3390/ijms22020954