1. Introduction

Nitrogenase is a unique system able to convert N₂ to NH₃ [27]. Total cost of N₂ reduction corresponds to eight electrons being transferred and 16 MgATPs being hydrolyzed. Three classes of nitrogenase differ in the heteroatom present in the active site metal cluster (Mo, V or Fe), but the Mo-dependent nitrogenase is the most important and best-studied enzyme [40]. It contains two metallo-components, dinitrogenase (molybdenum–iron (MoFe) protein) and dinitrogenase reductase (Fe protein), which associate and dissociate in a catalytic cycle also requiring a reducing source and MgATP [41]. The MoFe protein contains two metal clusters: the iron–molybdenum cofactor (FeMo-co) [42], which provides the active site for substrate binding and reduction, and a P-cluster, involved in electron transfer from the Fe protein to FeMo-co [43]. The FeMo cofactor is thus the key element for the mechanism of N₂ fixation. It also contains an interstitial carbon atom [44] which is key for the CO₂ conversion mechanism, providing stability to the complex. Figure 1a reports the model of the FeMo cofactor, while Figure 1b shows the proposed mechanism of N₂ fixation [27].

The key features of this mechanism [45,46] are:

(i)

A specific binding site for N₂ able to first accept four electrons/protons to form two [Fe–H–Fe] bridging hydrides,

(ii)

coordination of N₂ on two iron atoms with simultaneous reductive elimination of H₂,

(iii)

multi-electron/proton transfer to a coordinated undissociated N₂ molecule to form a N₂H₂ molecule stabilized by interaction with two iron atoms,

(iv)

further multi H⁺/e⁻ transfer to form an end-on N₂H₄ coordinated molecule,

(v)

further steps of H⁺/e⁻ transfer with stepwise release of ammonia.

 

2. Mechanisms in Nitrogenase

The simultaneous electron/proton transfer to an undissociated coordinated N₂ molecule is a different feature regarding the mechanisms in iron catalysts for the high-temperature/pressure HB (Haber-Bosch) process, where the first (rate-limiting) step is the dinitrogen dissociative chemisorption followed by sequential hydrogenation of the intermediates [47,48,49,50]. The reason for the difference in the mechanism is that the nitrogen molecule dissociation path, in principle, is preferable as sequential steps of electron transfer and hydrogenation of the nitrogen adatoms. However, the strongly bound nitrogen species formed by dissociation require high temperatures to avoid catalyst inhibition, and, therefore, there is a need for high-pressure operations (as this is an exothermic reversible reaction). For the undissociated N₂ molecule activation, sequential electron and proton transfer steps would generate high-energy intermediates [51]. For example, adding one electron and one proton to N₂ to form a N₂H* species requires −3.2 V vs. normal hydrogen electrode (NHE). For multi-electron reduction processes, for example, to produce N₂H₅⁺ adspecies, the reduction potential becomes −0.23 V. Multi-electron reactions are thus necessary in the low-temperature profile, in agreement with what was observed for nitrogenase, and to avoid/minimize the side reaction of H⁺/e⁻ recombination to form H₂, which is also possible in the enzyme path.

As a slight change, more recent indications in the mechanism [52] instead suggest the formation of a Janus intermediate, i.e., the formation of a symmetric hydride structure with a subsequent diazene intermediate (Figure 2).

Nitrogenase, particularly in the vanadium form [53], can also catalyze the reductive carbon–carbon coupling of COx into hydrocarbon products. This is also a unique feature and suggests a role of this enzyme as an evolutionary link between the nitrogen and carbon cycles on Earth [28]. The mechanism of C-C coupling is not clear, but progress has been made recently [54]. From CO₂, the mechanism involves a first step of reduction of CO₂ to CO by the Fe protein ([Fe₄S₄]⁰) of nitrogenase [55], followed by the reductive carbon–carbon coupling of two coordinated CO molecules on the same active site of the nitrogenase cofactor proposed for N₂ fixation (M-cluster). The tentative mechanism is presented in Figure 3.

The same Janus intermediate proposed for N₂ fixation (symmetric hydride structure) reacts with two CO molecules (produced on the Fe protein) to form an ethyne-like intermediate which can be hydrogenated to ethylene or could react further to form a ferracycle (formed by C₂H₄ binding to one of the Fe atoms [56]), leaving the other Fe free to form other Fe-hydride species and further coordinate CO, which can react with the ferracycle species, to give C2 products (hydrocarbon, oxygenated chemicals) (Figure 4).

Figure 4. Proposed schematic mechanism of the active sites in FeMo cofactor for conversion of C2 intermediate to C3 products (hydrocarbon, oxygenates) via formation of a ferracycle species.

This entry is adapted from the peer-reviewed paper 10.3390/ijms22010139