1.2. Glucocorticoid Receptor: Structure and Function
GCs bind the GC receptor (GR), also known as Nuclear Receptor 3 C1 (NR3C1). This is a soluble receptor belonging to the superfamily of nuclear receptors (NRs)
[2][12][2,12]. It is estimated that 1000 to 2000 genes are subject to GR-mediated regulation, and some studies suggest that up to 20% of all genes are responsive to the GR. The GR regulates many pathways (e.g., gluconeogenesis
[13][14][13,14], inflammatory response
[3][15][3,15], fatty acid metabolism
[16][17][16,17]) by regulating gene expression in various organs and tissues (e.g., liver
[18][19][18,19], nervous system
[20][21][20,21], adipocytes
[17][22][17,22]). Over- or under stimulation of the GR results in severe phenotypes such as Cushing syndrome and Addison’s disease
[23][24][23,24]. The NR family is composed of 49 members and includes other well-known receptors, such as the estrogen receptor (ER) and mineralocorticoid receptor (MR) as well as a number of orphan receptors (the ligands of which are unknown)
[25]. Similar to other nuclear receptors, the protein domain configuration of the GR can be subdivided into the following four regions (
Figure 1A), from N-terminus to C-terminus
[25]: N-terminal domain (NTD), a DNA-binding domain (DBD), a short flexible hinge region and the ligand binding domain (LBD). The N-terminal domain is the least conserved of the four domains. It shows large differences between different nuclear receptors
[25] and contains most polymorphisms in humans (mostly without deleterious effect)
[26][27][26,27]. The NTD is also intrinsically disordered, making it difficult to study its structure, and no crystal structure of this region is available. However, there is some structural information known, mainly secondary structure information. The activator function domain within the NTD is an organized domain in vivo which may adopt variable conformation to induce specific responses by recruiting different cofactors based on its configuration
[28]. Expression of the GR-coding gene (
NR3C1) can start from several alternative transcription initiation sites, which give rise to receptor isoforms differing in the size of the NTD, each with a different transcriptional capability and tissue-specific expression
[29][30][29,30]. Next to the multiple possible transcription initiation sites, the GR also has multiple possible alternative translation start sites in exon 2, leading to different translational isoforms. Finally, the GR also undergoes alternative splicing, leading to several alternative splice isoforms
[31]. These isoforms are formed by splicing variations in the final introns/exons, involving the sequence coding for the LBD and sometimes the hinge region
[31]. The main isoforms involve an alternative terminal splice acceptor site, resulting a different final exon used giving the GRα and GRβ isoforms
[32][33][32,33]. GRα is the canonical active GR while GRβ lacks ligand binding and transactivation activities so that GRα/GRβ and GRβ/GRβ dimers cannot activate gene expression, but can bind DNA. As GRβ is always located in the nucleus, this results in an inhibition of GR activity
[33][34][33,34]. Without ligand, the GR is kept in the cytoplasm in a multiprotein complex consisting of immunophilins and various chaperones in a configuration optimal for highly sensitive ligand binding
[35]. When a ligand binds, the complex changes and recruits other factors
[36][37][36,37], ultimately resulting in the import of GR into the nucleus through the nuclear pores, where it will exert its regulatory functions
[38]. While there is one study that shows GR dimers in cytoplasm, this study was based on a strong overexpression system used in vitro
[39]. Furthermore, David Bain’s group showed that GR does not form dimers spontaneously and that an additional factor, such as DNA, is needed
[40].
Figure 1. Structure of the GR and its DBD. (A) Domain structure of the GR. The disordered N-terminal domain contains one of the two activator functions (AF-1) for receptor transcriptional activity. The DNA binding domain (DBD; blue) contains the zinc finger element responsible for recognizing and binding the GR response element in the DNA and a second zinc finger providing the primary dimerization interface between two GR molecules. In addition, the DBD contains nuclear localization (NLS-1), nuclear retention (NRS) and nuclear export signal (NES) peptide sequences. The hinge region (H; red) is a short flexible linker connecting the DBD to the C-terminal ligand binding domain (LBD). This LBD is responsible for binding ligands in the ligand binding pocket and also contains a nuclear localization signal (NLS-2) and a second dimerization interface. Finally, the second, and most powerful, activation function (AF-2) is also located in the LBD. (B) The first zinc finger of the DBD plays a role in recognizing and binding the GRE, through the P-box. The second zinc finger is responsible for homodimerization of GR. The residues in the D-loop are especially important for this functionality. The lever arm connects both zinc fingers and changes conformation depending on the exact DNA sequence bound, transmitting DNA sequence information to the rest of the receptor. Interaction of the DBD of 1 GR partner with the DNA is depicted, with P-box shown in red. Blue lines indicate hydrogen bond interactions, black lines indicate van der Waals interactions, dotted lines indicates that the interaction is with the complementary nucleotide of the opposing strand. The K and V residues in the P-box make site specific contacts with the DNA and recognize G2 and T4′ residues respectively. The arginine outside the p-box interacts with G5′. These 3 GR-DNA interactions are of great importance, but depending on sequence context, other residues also make further stabilizing contacts with the DNA. Dimer stabilizing interaction between 2 GR molecules is depicted in the lower left figure. A458 makes a backbone-based hydrogen bond contact with I464′ (and I464 with A458′). The interface is further stabilized by 2 salt bridges formed by R460 and D462′ and D462 and R460′. Underlined residues have been subjected to mutagenesis to yield GR dimer deficient mutants, of which A458T, GRdim, has been used the most in scientific research, with many publications studying it directly (e.g., if it still forms dimers), or using it as a poorly dimerizing receptor.
It is generally accepted that GR exerts its function in the nucleus by forming a receptor homodimer and binding DNA at a specific sequence element. Initially it was thought that GR would form tetramers
[41], but this was abandoned due to lack of direct evidence and the fact that support was found for the existence of dimers
[42]. However, several recent studies, mainly by the group of Diego M. Presman, have once again brought the notion that GR might also exist as a tetramer, or as a dimer of dimers
[43][44][43,44], to the forefront. The GR dimer model remains the most generally accepted model for GR function and GR tetramerization is an active avenue of research. Next to the dimeric and, and possible tetrameric functions of GR, the GR monomer is also thought to perform several functions. The exact functioning of GR monomers is not yet fully understood, but dimer-deficient mutants have been generated and used to infer monomeric activity. Likewise, some GR ligands that prevent dimer formation, such as compound A, can also be used. Decades ago, it was hypothesized that GR monomers would rather be transcription blockers, either by DNA binding or by inhibitory protein–protein interactions with other transcription factors, such as sequestration and tethering, while GR homodimers would be more responsible for gene upregulation via direct DNA binding. While direct monomeric DNA-binding activities have not been directly observed in a quantitative assay, there is other evidence in support (see further). Evidence for tethering and sequestration of other TFs by GR, which is believed to be a monomeric function, has been found. Since GR is supposed to bind pro-inflammatory transcription factors such as NF-kappaB as a monomer
[45], and since GR likely induces expression of some genes involved in gluconeogenesis (Phosphoenolpyruvate carboxykinase 1 (
PCK1) and Glucose 6-phosphate (
G6PC), potentially leading to type 2 diabetes mellitus, an important side effect of GCs), as a dimer
[14], this led to the paradigm that beneficial, anti-inflammatory, effects were monomer mediated and that undesirable side effects were dimer mediated. It was generally believed that skewing GR into a monomeric form or into a dimeric form could determine therapeutic outcome versus side effects profiles
[46]. A balance in favor of monomers would be ideal for chronical treatment, with a minimum of side effects (from GR dimers) of long-term GR activation
[47], and stronger dimerization would be better in acute settings (
Figure 2)
[48]. Indeed, several GR dependent gene products–thought to be dimer dependent–have been identified to have anti-inflammatory functions that can be responsible for the acute anti-inflammatory effects of GCs, as will be illustrated below.
Figure 2. Monomeric and dimeric functions of GR. Work has been carried out to search for ligands that push the GR towards monomeric or dimeric action for chronic and acute inflammatory diseases, respectively. Indeed, both forms of GR possess anti-inflammatory actions trough tethering and anti-inflammatory gene induction, respectively. Most of the side-effects of GCs (hyperglycemia, glucocorticoid resistance, etc.) are ascribed to its dimeric functions, and therefore SEMOGRAMs are believed to improve the therapeutic index in chronic settings requiring long-term use of GCs. In acute inflammatory diseases, such as SIRS and sepsis, however, dimeric GR is believed to be essential to limit inflammation and therefore SEDIGRAMs are favored in these settings. A good understanding of the mechanisms determining the balance between GR monomers and dimers is needed in the search for such dissociating ligands. SEMOGRAM: selective monomerizing GR agonists and modulators, SEDIGRAM: selective dimerizing GR agonists or modulators.
Work has been carried out to search for ligands that push the GR towards monomer or dimer action as respectively Selective GR Activators and Modulators (SEGRAM), such as compound A
[49], and Selective Dimerizing Glucocorticoid Receptor Agonists and Modulators (SEDIGRAM)
[10]. While several effective synthetic GCs have been developed, so far this approach has not resulted in such “skewing” ligands at the bedside. Dissociating the side effects and anti-inflammatory effects of GCs solely on the basis of their monomeric or dimeric structure turned out to be unrealistic. Indeed, it has been shown that in an acute inflammatory setting, consensus GRE (dimer or higher order) gene expression is required for GC/GR effectiveness. Moreover, some side effects are not mediated via dimeric GR (see
Table 1). A good understanding of the mechanisms and functions of receptor dimer formation is needed to help developing such ligands in a more educated way.
TIn th
e resesearchers is paper, we will provide an overview of the current understanding of GR dimerization, with a focus on insights into dimerization mechanisms and the importance of intact GR dimers in pathophysiological conditions inferred from studies with mutant mice.
Table 1.
Phenotypes retrieved from GR
dim/dim
mice in different physiological and pathological processes.
Process |
Effect in GR | dim/dim | Mutant |
References |
Resolution of inflammation |
Antigen- and G6PI-induced arthritis |
DEX protection lost |
[50] |
Serum transfer-induced arthritis |
DEX protection lost |
[51] |
Contact hypersensitivity |
DEX protection lost |
[52] |
PMA-induced irritative skin inflammation |
DEX protection intact |
[53][54] | [53,54] |
Experimental autoimmune encephalomyelitis |
DEX protection intact |
[55] |
Allergic airway inflammation |
DEX protection lost |
[56] |
Graft- vs host disease |
Increased mortality |
[57] |
TNF-induced SIRS |
Increased mortality + DEX protection lost |
[58][59] | [58,59] |
LPS-induced SIRS |
Increased mortality + DEX protection lost |
[60][61][62][63] | [60,61,62,63] |
CLP-induced septic shock |
Increased mortality |
[64][65] | [64,65] |
Side effects |
Hyperglycemia |
Pred effect reduced |
[66][67] | [66,67] |
Osteoporosis |
Pred/DEX effect intact |
[68][69][70] | [68,69,70] |
Skeletal muscle atrophy |
DEX effect intact |
[71] |
Wound repair |
Wound repair reduced |
[72] |
Gastroparesis and gastric acid secretion |
DEX effect lost |
[73] |
Ocular hypertension leading to glaucoma |
DEX effect lost |
[74] |
Glucocorticoid resistance |
DEX effect lost |
[75] |
Cellular processes |
Adipogenesis |
No adipogenesis |
[76] |
Apoptosis |
DEX effect lost |
[46][77] | [46,77] |
Proliferation |
Proliferation reduced |
[46] |
Spatial memory |
Spatial memory reduced |
[78] |
Cognitive function under stress condition |
CORT effect reduced |
[79] |
Weight control |
Body weight increased |
[80] |
Activation HPA axis in 6% hypoxia |
Activation of HPA axis reduced |
[81] |
Trauma-induced fracture healing |
Protected |
[82] |
2. Role of GR Complex Formation in SIRS and Sepsis
2.1. SIRS and Sepsis
GR homodimerization is believed to be important for different physiological and pathological functions of GR, which are summarized in
Table 1 (see also ref
[83][93]). This table summarizes the findings using the GR
dim/dim mice. Given the recent insights contributing to
the our
esearchers understanding of the hypersensitivity of GR
dim/dim mice in systemic inflammatory response syndrome (SIRS) and sepsis,
thwe
researchers will focus
the researchersour discussion on this topic. The different phenotypes observed in GR
dim/dim mice during acute inflammation illustrates the pleiotropic mechanisms of how dimeric GR is thought to control inflammation.
SIRS is characterized by a fast, systemic release of cytokines, such as tumor necrosis factor (TNF), interferons (IFNs), interleukin 6 (IL-6) and IL-1β, as a response to a noxious stressor such as trauma or ischemia. Sepsis evolves from an infection that causes life-threatening organ dysfunction resulting from a dysregulated host response. In contrast to SIRS, sepsis involves activation of both pro- and anti-inflammatory responses, along with abnormalities in non-immune compartments, such as the cardiovascular, metabolic and coagulation compartments
[84][141]. According to the latest global estimates of sepsis incidence and mortality, 49 million people are affected yearly, leading to 11 million deaths, corresponding to 20% of all deaths worldwide
[85][142]. Injection of TNF or lipopolysaccharides (LPS), the latter being cell wall components of Gram-negative bacteria, are animal models used as models for SIRS. One of the most relevant models for sepsis is the cecal ligation and puncture (CLP) model. In this model, the cecum is ligated and punctured using a needle, followed by resuscitation with antibiotic-containing fluids
[86][143]. That GCs protect against sterile SIRS, was shown many years ago, by applying the TNF and LPS models
[87][88][89][144,145,146].
2.2. Anti-Inflammatory Genes Induced by GR Complex Formation
GR
dim/dim mice are extremely sensitive to TNF-induced SIRS
[58][59][58,59]. Mortality rate is significantly higher in GR
dim/dim mice compared to their WT counterparts, and this is associated with higher plasma IL-6 levels and more severe intestinal damage
[58][59][58,59]. Mitogen-activated protein kinase phosphatase
1 (MKP-1) plays a key role herein. MKP-1 is induced upon dexamethasone (DEX) or TNF injection in GR
wt/wt mice and not in GR
dim/dim mice as a consequence of reduced binding of the mutant GR to the GRE of the MKP-1 coding gene
Dusp1. Dusp1
−/− mice are similarly sensitized for TNF as GR
dim/dim mice and show increased levels of phosphorylated Jun N-terminal kinases (JNK), which promote apoptosis in liver tissue. Loss of
Jnk2 partially rescues the TNF hypersensitivity of Dusp1
–/– and GR
dim/dim mice. These data illustrate the important role of GR complex formation in resisting TNF-induced SIRS through inhibiting
JNK2 activation via MKP-1 activation
[58]. Another anti-inflammatory gene requiring an intact GR dimerization profile is Sphingosine kinase 1 (
SphK1 encoding S1P). This gene is synergistically induced by GCs and pro-inflammatory stimuli via the GR in macrophages, resulting in increased circulation of S1P during inflammation. GR
dim/dim macrophages lack binding of the mutant GR to the GRE of
SphK1 resulting in reduced S1P release in GR
dim/dim mice upon LPS treatment. S1P is essential to limit lung inflammation induced by LPS endotoxemia as DEX can no longer protect against acute lung injury in absence of GR or
SphK1 in myeloid cells, or in GR
dim/dim mice
[60]. A last example illustrating the importance of GR complex formation to protect against sepsis is
Tsc22d3 encoding Glucocorticoid Induced Leucine Zipper (GILZ). Full expression of
Tsc22d3 requires an intact GR dimerization potential
[59][90][59,83]. GILZ is typically induced by GCs, but upon inflammation this gene is reduced in several cell types, such as hepatocytes and blood cells
[91][147]. However, the mechanism behind the downregulation of GILZ in inflammatory settings is not yet understood. A possible explanation could be that due to the GC unresponsiveness in sepsis
[65], the GR is unresponsive towards GR’s endogenous ligand cortisol/corticosterone, thereby leading to decreased expression of this gene. The recently registered RECORDS trial is therefore using GILZ expression in blood as a marker of corticosteroid activity for the rapid recognition of GC resistance in sepsis patients (NCT04280497). However, it should be noted that other mechanisms, next to GR-mediated transcription, can control levels of GILZ. For example, it has been illustrated that the RNA-binding protein tristetraprolin can reduce GILZ mRNA stability upon TLR activation
[92][148]. Mice with GILZ overexpression (GILZ-tg mice) have a reduced mortality towards CLP-induced peritonitis, which could be linked to an enhanced bacterial clearance
[91][147]. Moreover, overexpression of GILZ specifically in monocytes and macrophages similarly reduced mortality rates in the CLP model as the full GILZ-transgenic mice, and this was also associated with an increased bacterial clearance due to enhanced phagocytosis capacity of macrophages
[93][149]. Taken together, the data suppose that anti-inflammatory genes requiring an intact GR dimerization potential (i.e.,
Dusp1,
SphK1 and
Tsc22d3) are essential to transmit the protective effects of GR in SIRS and sepsis.
2.3. Pro-Inflammatory Genes Suppressed by GR Complex Formation
In addition to its typical transactivation potential, GR dimers may downregulate hundreds of genes by interaction with IR-nGRE
[94][117]. For example, based on studies using GR
dim/dim mice, GR dimers are supposed to directly bind to IR-nGRE elements in the STAT1 promoter resulting in reduced STAT1 induction and phosphorylation. Unchallenged GR
dim/dim mice, which lack the potential to bind these short DNA sequences, subsequently present a strong IFN-stimulated gene (ISG) signature. This ISG signature is gut-specific and dependent on the gut microbiota as assessed with antibiotics studies. Injection of TNF in GR
dim/dim mice leads to an even more outspoken induction of these ISGs, including necroptosis master switches
Ripk3,
Zbp1 and
Mlkl, compared to their WT counterparts
[59]. The increased expression of these genes contributes to necroptotic cell death in the intestinal epithelial cells (IECs) and subsequent intestinal leakage. DEX is able to protect GR
wt/wt mice challenged with a lethal TNF dose, whereas this is not the case for GR
dim/dim mice challenged with their respective lethal TNF dose. The transcription factor binding motifs found in GR
wt/wt-specific DEX downregulated genes were specifically ISRE and IRF elements. As such, DEX has a lower impact on the repression on TNF-induced ISGs and concomitant intestinal damage in GR
dim/dim compared to GR
wt/wt mice. Nec1s, a specific necroptosis inhibitor partially rescues the hypersensitivity of GR
dim/dim mice to TNF, thereby illustrating the essential role for GR complex formation in resisting TNF-induced SIRS trough inhibiting necroptosis in the intestinal epithelium
[59].
Next to the observed effects of the GR
dim/dim mutant in IECs, this mutation also has clear effects on macrophage function. In contrast to TNF, expression of IL-1β is prolonged in GR
dim/dim mice that succumb to LPS-induced shock
[64]. This may be attributed to the role of GR dimerization in macrophages, as BMDMs derived from GR
dim/dim mice are refractory to GC treatment as assessed by the production of IL-1β upon addition of LPS and/or DEX. Inhibiting IL-1β using an IL-1 receptor antagonist partially rescues the hypersensitivity of GR
dim/dim mice to LPS, thereby illustrating an important role for complex formation in resisting LPS-induced mortality through modulating IL-1β production
[64]. Interestingly, GR
lysmKO mice, which lack the GR in their myeloid cells, similarly show increased susceptibility towards LPS injection, but IL-1β inhibition completely protects in this mouse model. Since GR
dim/dim mice carry the point mutation in all cell types, these data suggest that GR dimerization in other cell types also contributes to survival during sepsis, and moreover, that the monomeric function of GR in myeloid cells also provides some protection
[64]. Indeed,
thwe re
searchers rececently showed that GCs apply two key mechanisms to control endotoxemia. One at the level of macrophages, where GCs are thought to suppress TNF production in a GR monomer-dependent way, and one at the level of the intestinal epithelium, where GCs are believed to suppress TNFR1-induced ISG gene expression and necroptotic cell death in a dimer-dependent way
[61]. Lastly, Osteopontin (OPN), a crucial mediator for lung inflammation, is increased in the lungs of GR
dim/dim mice challenged with LPS compared to GR
wt/wt mice. A partial role for GR complex formation in macrophages was found herein, as BMDMs derived from GR
dim/dim mice showed a trend towards induced
Opn upon LPS treatment, compared to their WT counterparts
[62]. However, as this induction was not significant, a possible role for GR in other cell types contributing to
Opn regulation cannot be excluded and remains to be elucidated. Collectively, these data demonstrate that suppression of pro-inflammatory genes in an assumedly GR dimer-dependent way (
Stat-1,
IL-1β and
Opn) are essential for protection against SIRS and sepsis.
2.4. Hemodynamic and Metabolic Parameters Controlled by GR Complex Formation
Next to the direct effect of GR dimerization on the inflammatory compartment of sepsis, GR dimerization is also thought to be protective in sepsis by controlling hemodynamics and metabolic parameters. For example, GR
dim/dim mice challenged with LPS have a compromised systemic hemodynamic stability and require increased norepinephrine to maintain hemodynamic stability
[62]. Moreover, LPS treatment in GR
dim/dim mice leads to increased levels of lactate when compared to WT mice. The higher lactate levels might be linked to a disturbed mitochondrial function in the heart of GR
dim/dim animals
[62]. Another clarification for the increased lactate levels of GR
dim/dim mice is via reduced clearance of lactate. Indeed, the main mechanism to clear lactate is via the Cori cycle, i.e., conversion of lactate to glucose in the liver via gluconeogenesis and release of glucose in the blood which then can be taken up by peripheral tissues. Gene expression profiling of livers of prednisolone-treated GR
wt/wt and GR
dim/dim mice, identified reduced fold changes of typical gluconeogenic genes (e.g.,
Pck1,
Irs1) in GR
dim/dim mice compared to GR
wt/wt mice, thereby suggesting a role for GR dimerization in regulating gluconeogenesis
[67]. Indeed, GR
dim/dim mice show more pronounced hypoglycemia after LPS challenge compared to GR
wt/wt mice
[95][150]. Interestingly, next to the role of GR dimerization in controlling glucose and lactate levels, administration of lactate leading to peak blood lactate values of 20 mM, which is the value of lactate typically observed in the sickest mice after CLP surgery, does not cause detrimental effects in GR
wt/wt mice, whereas it does lead to acute lethality in GR
dim/dim mice
[65]. This lethality could be linked to an uncontrolled production of vascular endothelial growth factor (VEGF), resulting in vascular leakage, severe hypotension and organ damage
[65]. How and where GR dimerization is supposed to control lactate toxicity remains to be studied. One possibility is through regulating lactate-induced VEGF production, for example in macrophages. Another possibility is by protecting the barrier function of the endothelium. Indeed, deletion of GR specifically in the endothelium renders mice hypersensitive for endotoxemia
[96][151]. Whether this protective effect of GR in the endothelium is monomer- or rather dimer-dependent has not been evaluated.
Taken together, GR complex formation is important in multiple cell types (i.a., intestinal epithelium and macrophages) to protect against SIRS and sepsis (Figure 3). This protection is believed to depend on dimeric regulation of both pro- and anti-inflammatory genes through binding respectively IR-nGRE and GRE sequences. Next to their basal increased susceptibility towards SIRS and sepsis, GRdim/dim mice are also refractory to GC treatment in SIRS conditions. Moreover, GR complex formation also controls critical hemodynamic and metabolic parameters essential for surviving acute diseases such as SIRS and sepsis.
Figure 3. GR complex formation is required for surviving SIRS and sepsis. Upon infection, pro-inflammatory cytokines (Opn, IL-1b and TNF) are produced by myeloid cells and cause acute lung injury (ALI) and intestinal damage. GR dimerization is thought to be necessary to control these pro-inflammatory genes and prevent organ damage. In addition, anti-inflammatory genes (Tsc22d3, SphK1) are produced by the myeloid cells, likely in a dimer-dependent way, which is necessary to further suppress organ damage. Next to the effects of GR dimerization on the inflammatory compartment, the dimeric GR may be essential to prevent hemodynamic instability and control glucose and lactate levels during sepsis.