Non-Steroidal CYP17A1 Inhibitors and Prostate Cancer

Non-Steroidal CYP17A1 Inhibitors and Prostate Cancer: Comparison

Please note this is a comparison between Version 2 by Amina Yu and Version 1 by Tomasz M. Wróbel.

Abiraterone is the only (as of 2021) CYP17A1 inhibitor approved for the treatment of castrate resistant prostate cancer. It is a molecule based on a steroidal scaffold. Multiple research groups have focused their attention on discovering non-steroidal compounds, which hold promise to be efficacious drugs with limited side effects.

cytochrome P450 17A1
CYP17A1
prostate cancer
enzyme inhibition

1. Introduction

Current discovery efforts towards new therapies focus on androgen receptor (AR) signaling. Those endeavors introduced the next-generation AR antagonists represented by enzalutamide and apalutamide [2]. Other notable discoveries include proteolysis-targeting chimeras (PROTACs), poly ADP-ribose polymerase (PARP) [3] inhibitors, histone deacetylase (HDAC) inhibitors [4], and various forms of immunotherapy [5]. The emergence of novel targets such as fatty-acid binding protein 5 (FABP5) [6] also illustrates the progress that has been made in the field of prostate cancer. However, despite these efforts, PCa still presents a significant problem.

Current discovery efforts towards new therapies focus on androgen receptor (AR) signaling. Those endeavors introduced the next-generation AR antagonists represented by enzalutamide and apalutamide ^[1]. Other notable discoveries include proteolysis-targeting chimeras (PROTACs), poly ADP-ribose polymerase (PARP) ^[2] inhibitors, histone deacetylase (HDAC) inhibitors ^[3], and various forms of immunotherapy ^[4]. The emergence of novel targets such as fatty-acid binding protein 5 (FABP5) ^[5] also illustrates the progress that has been made in the field of prostate cancer. However, despite these efforts, PCa still presents a significant problem.

In addition to the interventions mentioned above, cytochrome P450 17A1 (CYP17A1) inhibition has in recent years received increased attention as a valid treatment modality. CYP17A1 is a dual-function oxygenase membrane-bound enzyme that catalyzes the biosynthesis of steroids [7,8,9]. Its dual activity stems from the ability to produce precursors for glucocorticoids via 17α-hydroxylase reaction and androgens/estrogens via 17,20-lyase reaction [10]. Therefore, CYP17A1 is an attractive target for the treatment of prostate cancers that proliferate in response to androgens [11]. CYP17A1 is required in both the “classic” and “back-door” pathways of steroid biosynthesis, and by its inhibition, the production of androgens can be limited [12,13].

In addition to the interventions mentioned above, cytochrome P450 17A1 (CYP17A1) inhibition has in recent years received increased attention as a valid treatment modality. CYP17A1 is a dual-function oxygenase membrane-bound enzyme that catalyzes the biosynthesis of steroids ^[6][7][8]. Its dual activity stems from the ability to produce precursors for glucocorticoids via 17α-hydroxylase reaction and androgens/estrogens via 17,20-lyase reaction ^[9]. Therefore, CYP17A1 is an attractive target for the treatment of prostate cancers that proliferate in response to androgens ^[10]. CYP17A1 is required in both the “classic” and “back-door” pathways of steroid biosynthesis, and by its inhibition, the production of androgens can be limited ^[11][12].

2. Synthesis

A total of 20 new compounds were synthesized using the previously described method [14] (Schemes 1 - 5).

2. Synthesis

A total of 20 new compounds were synthesized using the previously described method ^[13] (Schemes 1 - 5).

Scheme 1.

Synthesis of compounds

–

. Reaction conditions: (a) 1-bromo-4-fluorobenzene, K3PO4, DMF, 150–160 °C, 53–78%; (b) amine, precatalyst Pd G1 or G3, tBuXPhos, NaOtBu, THF or tBuOH, 21–73%.

Scheme 2.

Synthesis of compounds

–

. Reaction conditions: (a) 1-fluoro-4-nitrobenzene, K3PO4, DMF 150 °C, 66% or 2-fluoro-5-nitropyridine, K3PO4, DMSO, rt, 74%; (b) 10% Pd/C, MeOH, rt, 82%; (c) bromide, precatalyst Pd G3, tBuBrettPhos, LHMDS, THF, 60 °C, 4–15%.

Scheme 3.

Synthesis of compound

. Reaction conditions: (a) 4-hydroxyphenylboronic acid, O2, Cu2S, TMEDA, MeOH, rt, 71%; (b) 4-bromopyridine hydrochloride, NaOtBu, DMF, 150 °C, 32%.

Scheme 4.

Synthesis of compounds

–

. Reaction conditions: (a) 1-bromo-4-fluorobenzene, K3PO4, DMF, 160 °C, 5–44%; (b) Boc2O, TEA, tBuOH, 40 °C, 74–90%; (c) 4-aminopyridine, precatalyst Pd G1, tBuXPhos, NaOtBu, tBuOH, 70 °C, 11–50%; (d) TFA, DCM, 23–50% (over two steps, c and d).

Scheme 5.

Synthesis of compounds

–

. Reaction conditions: (a) 1-fluoro-4-nitrobenzene or fluoronitrotoluene, K3PO4, DMF, 160 °C, 18–93%; (b) 10% Pd/C, MeOH, rt, 91–96%; (c) 2- or 4-aminopyridine, precatalyst Pd G3, tBuXPhos, NaOtBu, THF, MW 100 °C, 23–32%.

The final compounds were fully characterized by

HNMR and

¹³CNMR spectroscopy, as well as HRMS spectrometry, and were found to be >99% pure (HPLC). Detailed synthetic procedures, spectra, and HPLC chromatograms can be found in Supplementary Materials.

3. Biological Evaluation

The obtained compounds were subjected to initial screening for inhibition of CYP17A1 activity at a fixed concentration (10 µM) (

CNMR spectroscopy, as well as HRMS spectrometry, and were found to be >99% pure (HPLC).

3. Biological Evaluation

The obtained compounds were subjected to initial screening for inhibition of CYP17A1 activity at a fixed concentration (10 µM) (

Figure 1

). Substantial activity was observed in the case of compounds

2). Substantial activity was observed in the case of compounds 2,

12,

and

. Compound

was the most potent and comparable to abiraterone used as a reference compound. These three most potent compounds were selected for more rigorous testing comprising determination of IC50, selectivity towards CYP isoform CYP3A4, the ability to inhibit cytochrome P450 reductase (POR) and the ability to inhibit the lyase reaction of CYP17A1. Compounds

and

displayed IC50 of 1.2, 3.4 and 2.6 µM, respectively, in the inhibition of the CYP17A1 17α-hydroxylase activity (

Figure 3). All three selected compounds exhibited selectivity vs. CYP3A4 (

2). All three selected compounds exhibited selectivity vs. CYP3A4 (

: 104 ± 4%,

: 75 ± 5% and

: 117 ± 8% compared to untreated control) and importantly they do not appear to inhibit POR (

: 93 ± 9%,

: 103 ± 9% and

: 88 ± 16% compared to untreated control) (

Figure 4), suggesting a targeted activity towards CYP17A1. Finally, checking compounds

3), suggesting a targeted activity towards CYP17A1. Finally, checking compounds

and

against the lyase reaction, unfortunately, revealed little influence compared to abiraterone (

: 78 ± 10%,

: 77 ± 4% and

: 82 ± 5% of untreated control, compared to 5 ± 2% activity observed for abiraterone) (

Figure 5).

4).

Figure 21.

Inhibition of CYP17A1 17α-hydroxylase activity by compounds

–

at 10 µM concentration.

Figure 32.

Determination of IC50 of compounds

12,

and

for inhibition of the 17α-hydroxylase activity of CYP17A1.

Figure 4.

The activity of compounds

12,

and

towards POR (

) and CYP3A4 (

Figure 5.

Inhibition of CYP17A1 lyase reaction by compounds

12,

and

20.

4. Molecular Modeling

The three compounds,

4. Molecular Modeling

The three compounds,

12,

and

, showing the highest affinity for the CYP17A1 enzyme were subjected to a molecular modeling analysis to determine their potential binding mode. The compounds represent different combinations of ring systems yielding three different scaffolds. Compounds

and

only contain a single potential heme-coordinating moiety, a benzimidazole and a pyridine moiety, respectively. Compound

contains both these ring systems and, accordingly, this compound may bind to CYP17A1 in two different modes. The docking of

yields poses with the nitrogen lone pair on the benzimidazole ring pointing towards the Fe atom in the heme moiety (Fe···N = 2.5 Å). The binding mode of

is similar to the binding mode it was previously identified for the structurally related compound (

1d in [14]) with the cyclohexane ring located in a shallow hydrophobic cavity formed by Leu105, Ile205, and Ile206, which confirms that the enzyme may accommodate different hydrophobic moieties in this part of the active site (

in ^[13]) with the cyclohexane ring located in a shallow hydrophobic cavity formed by Leu105, Ile205, and Ile206, which confirms that the enzyme may accommodate different hydrophobic moieties in this part of the active site (

Figure 8A). The benzimidazole ring is also located nearly identical to the benzimidazole ring in the CYP17A1–galeterone complex (PDB 3SWZ) [7]. It also observed hydrogen bonding between Asp298 and the amine situated between the aromatic and aliphatic rings (O···N = 3.1 Å). Hydrogen bonding to Asp298 has also been observed in the structure of (S)-orteronel [39] complexed with CYP17A1 (PDB 5IRQ) [40]. Recently, Fehl et al. designed inhibitors derived from abiraterone with polar substituents on the B ring in the steroid framework, which formed hydrogen bonds to Asp298 (PDB 6CHI and 6CIR) [41].

6A). The benzimidazole ring is also located nearly identical to the benzimidazole ring in the CYP17A1–galeterone complex (PDB 3SWZ) ^[6]. It also observed hydrogen bonding between Asp298 and the amine situated between the aromatic and aliphatic rings (O···N = 3.1 Å). Hydrogen bonding to Asp298 has also been observed in the structure of (S)-orteronel ^[14] complexed with CYP17A1 (PDB 5IRQ) ^[15]. Recently, Fehl et al. designed inhibitors derived from abiraterone with polar substituents on the B ring in the steroid framework, which formed hydrogen bonds to Asp298 (PDB 6CHI and 6CIR) ^[16].

Figure 86. Preferred binding mode predicted by the GOLD docking program of compound

Preferred binding mode predicted by the GOLD(Genetic Optimization for Ligand Docking) docking program of compound

(green) (

(green) in comparison with abiraterone (cyan) (

) and

in two docking poses (pose #1 green and pose #2 cyan) (

). Coloring: protein is beige; heme is yellow; and all heteroatoms are colored based on type.

The docking of

showed, as expected, that the pyridine nitrogen coordinated to the Fe atom in the heme group with a Fe···N distance of 2.5 Å (

Figure 8B). Comparison with the X-ray structures of the CYP17A1–abiraterone complexes (PDB 3RUK and 4NKV) [7,38] revealed that the pyridine rings in the two structures overlap and that the benzene ring in

6B). Comparison with the X-ray structures of the CYP17A1–abiraterone complexes (PDB 3RUK and 4NKV) ^[6][17] revealed that the pyridine rings in the two structures overlap and that the benzene ring in

occupies the same space as the C ring of the steroid moiety of abiraterone. The methyl group in

was originally introduced to fill the hydrophobic cavity occupied by the B ring of abiraterone. It is possible that the position of the indole moiety relative to the benzene ring is caused by steric repulsion from that methyl group. Another possibility relies simply on a better fit to the upper part of the cavity. In any case, the indole moiety occupies the same space as the A ring and the C10 methyl group in the abiraterone structure. The docking of

also suggests that adding a polar substituent on the indole ring could make hydrogen bonding to Asn202, as observed in the CYP17A1–abiraterone complexes. Compound

contains both a pyridine and a benzimidazole system and, accordingly, two possible binding modes are theoretically possible (

Figure 8C). The docking revealed these with moieties coordinating to the Fe in the heme group with Fe···N = 2.4 Å (benzimidazole) and 2.5 Å (pyridine), respectively, referred to as pose #1 and pose #2. For compound

6C). The docking revealed these with moieties coordinating to the Fe in the heme group with Fe···N = 2.4 Å (benzimidazole) and 2.5 Å (pyridine), respectively, referred to as pose #1 and pose #2. For compound

12, pose #1 the benzimidazole system is located similarly to the benzimidazole system in the galeterone complex (3SWZ) [7], but in the opposite end of the compound, the pyridine is not close enough to make a contact to Asn202 as observed for galeterone. There are distinct differences in the orientation of the pyridine ring in pose #2 and in the abiraterone complexes 3RUK and 4NVK relative to the heme system. The 4-substituted pyridine ring requires more space above the heme group to adopt an ideal orthogonal orientation [42]. It suggests that the 3-substituted pyridine is the preferred moiety relative to the 2- and 4-substituted systems.

, pose #1 the benzimidazole system is located similarly to the benzimidazole system in the galeterone complex (3SWZ) ^[6], but in the opposite end of the compound, the pyridine is not close enough to make a contact to Asn202 as observed for galeterone. There are distinct differences in the orientation of the pyridine ring in pose #2 and in the abiraterone complexes 3RUK and 4NVK relative to the heme system. The 4-substituted pyridine ring requires more space above the heme group to adopt an ideal orthogonal orientation ^[18]. It suggests that the 3-substituted pyridine is the preferred moiety relative to the 2- and 4-substituted systems.

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