Antioxidant Peptides from Corn Silk Tryptic Hydrolysate: Comparison
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Corn silk (CS) is an agro-by-product from corn cultivation. It is used in folk medicines in some countries, besides being commercialized as health-promoting supplements and beverages. Unlike CS-derived natural products, their bioactive peptides, particularly antioxidant peptides, are understudied.

  • antioxidant
  • in silico
  • in vitro
  • mechanism
  • molecular docking
  • peptide
  • purification
  • Stigma maydis

1. Introduction

Corn silk (Stigma maydis) (CS) is the thread-like style at the top of an ear of corn. Although CS is discarded as an agricultural by-product worldwide, the value of CS as an herbal remedy has been recognized in the traditional medicines of some countries [1]. At present, CS health supplements and CS-based tea are also available to consumers. Phytochemically, CS is rich in flavonoids, which are responsible for some bioactivities of CS, such as antioxidant, anti-fatigue, and anti-hyperlipidemic [1]. In contrast to natural product exploration, the identification and characterization of CS-derived bioactive peptides are limited. CS consists of 17.6% of crude proteins by dry weight [1], hence it may be a potential source of bioactive peptides. To date, only antihypertensive [2] and anti-inflammatory [3] peptides were identified from CS, but there is no report of CS-derived antioxidant peptides. In our previous study, we found CS tryptic hydrolysate to be a more potent scavenger of hydrogen peroxide (H2O2) and superoxide than glutathione (GSH) and carnosine, two well-established peptidic antioxidants. Moreover, CS tryptic hydrolysate was more effective than the two aforementioned antioxidants in protecting human red blood cells from oxidative injury [4]. Nevertheless, the identity of the antioxidant peptides in the hydrolysate has not been unraveled.

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Antioxidant peptides derived from food and agricultural waste/by-products are recognized for their potential applications as food additives, functional food, health-promoting supplements, and lead compounds for drug discovery. In the food industry, such peptidic antioxidants of natural origin could be substitutes for synthetic antioxidants, which have raised concerns about health risks. Besides attenuating food oxidation, antioxidant peptides could also serve as curative or preventive agents of reactive oxygen species (ROS)-mediated diseases, supporting the application of such peptides in functional food and health supplement formulation [5]. Antioxidant peptides could alleviate cellular oxidative damage by scavenging free radicals and/or by regulating the cellular production of antioxidants or oxidants. The Keap1/Nrf2 pathway is a major pathway that modulates cellular antioxidant responses, which can be activated by antioxidant peptides [6]. Under oxidative stress, nuclear factor erythroid 2-related factor 2 (Nrf2) bound to Kelch-like ECH-associated protein 1 (Keap1) will detach and migrate to the nucleus, where it activates the expression of antioxidant genes [7]. By contrast, myeloperoxidase (MPO) and xanthine oxidase (XO) are associated with cellular ROS production. Antioxidant peptides isolated from fish skin gelatin hydrolysate alleviated oxidative injury in mice by inhibiting MPO, besides activating the Nrf2 to upregulate the expression of antioxidant enzymes [8]. Antioxidant peptides derived from mackerel meat, egg white, and tuna backbone protein were also demonstrated as potent XO inhibitors [9].

2. Purification of 1-h Trypsin Hydrolysate by Ultrafiltration

1-h Trypsin hydrolysate (T1H) was separated by ultrafiltration (UF), yielding two UF fractions. The >3 kDa fraction exhibited stronger antioxidant activity than the <3 kDa fraction based on their EC50 for 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt radical cation (ABTS•+) (28.4 and 45.6 µg dry mass (DM)/mL, respectively) and H2O2 (174.5 and 461.7 µg DM/mL, respectively) scavenging activities (Figure 1C,D). Thiobarbituric acid reactive species (TBARS) value of the negative control increased from 0.7 to 1.6 µM malondialdehyde equivalents after incubation of the lecithin liposomes from 24 to 48 h, indicating an increase in lipid peroxidation. As revealed by the TBARS values, treatment with 0.5 mg DM/mL of >3 kDa and <3 kDa fractions inhibited lipid peroxidation by 22% and 16% after 24 h, and by 64% and 50% after 48 h, respectively (Figure 1E). Our results are concordant with previous observations on the antioxidant activities of the UF fractions of fennel seed hydrolysate [10]. In theirs and this study, the superiority of the >3 kDa fraction in scavenging radicals relative to the <3 kDa fraction was observed. This may be attributed, in part, to the presence of large compounds, such as long peptides, partially degraded proteins, or other components with antioxidant properties in the >3 kDa fraction. In fact, the protein content of the >3 kDa fraction was 8-fold higher than that of the <3 kDa fraction (Figure 1A). By contrast, the <3 kDa fraction was peptide-rich, with peptide content 5-fold greater than the >3 kDa fraction (Figure 1B).
Fig 1
Figure 1. (A) Protein content, (B) peptide content, (C) 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt radical cation (ABTS•+) scavenging activity and (D) hydrogen peroxide (H2O2) scavenging activity of ultrafiltration (UF) fractions. (E) Thiobarbituric acid reactive species (TBARS) values of negative control and UF fractions tested at 0.5 mg dry mass (DM)/mL. For each bar chart, data are mean ± standard errors (n = 3). Mean values denoted by different superscript letters are significantly different (p < 0.05) according to Tukey’s test.
Notably, the <3 kDa fraction was comparable or superior to T1H in scavenging ABTS•+ and repressing lipid peroxidation, based on activity data reported in our previous study [4]. This implies that at least part of the antioxidant activities exhibited by T1H could be attributed to the presence of antioxidant peptides in the hydrolysate. The <3 kDa fraction was weaker than antioxidant tripeptide GSH (EC50 6.7 µg DM/mL) as an ABTS•+ scavenger but 3-fold stronger than GSH (EC50 1378.7 µg DM/mL) as H2O2 scavenger. H2O2 is an ROS molecule that can diffuse through biological membranes and convert to highly reactive hydroxyl radicals in the body cells [5]. Hence, the <3 kDa UF fraction likely contained antioxidant peptides with the ability to scavenge biologically relevant ROS. In this study, a time-dependent increase in the lipid peroxidation inhibitory activity of the UF fractions was observed (Figure 1E). This observation agrees with a previous study that compared the ability of corn gluten meal hydrolysates to inhibit lipid peroxidation in a ground pork system following 8 h and 16 h of treatment [11]. Our result showed that the lipid peroxidation inhibitory effects of the CS peptides could persist up to 48 h. Low molecular weight (MW) peptides are desirable because they could be more easily absorbed by the body compared to high MW peptides [5]. Thus, the peptide-enriched <3 kDa fraction was selected for further purification.

3. Purification of <3 kDa Fraction by Gel Filtration Chromatography

Purification by gel filtration chromatography (GFC) resulted in three pooled fractions: GF-I, GF-II, and GF-III (Figure 2A). Among the three, GF-I exhibited the strongest effects in ABTS•+ scavenging activity (Figure 2C). GF-I possibly comprised more non-aromatic peptide residues with radical scavenging activity, such as Leu and Pro [12] than the other two fractions. Meanwhile, GF-III showed the highest H2O2 scavenging activity among the three pooled fractions (Figure 2D). All three pooled GFC fractions could dampen the time-dependent increase in lipid peroxidation in the liposome model at 0.1 mg peptide/mL, with 26–35% inhibition of TBARS formation after 48 h (Figure 2E), although their activities were significantly lower than that of GSH (57% inhibition after 48 h). The peptide content of GF-III (0.68 mg peptide/mg DM) was 3.5-fold greater than those of GF-I and GF-II (Figure 2B). When compared to GF-III, 3.5-fold higher DM of GF-I and GF-II was required to achieve the standardized peptide concentration used for evaluating the lipid peroxidation inhibitory activity depicted in Figure 2E. It can be anticipated that when expressed in terms of DM, the lipid peroxidation inhibitory activity of GF-III may exceed that of GF-I. Thus, we also analyzed the lipid peroxidation inhibitory activity of the three pooled fractions at 0.5 mg DM/mL. As expected, among the three fractions, GF-III showed the strongest inhibition of TBARS formation, with 26% and 51% inhibition after 24 and 48 h, respectively (Figure 2F). The antioxidant activity of GF-III could be owing to its relatively high absorbance at 280 nm (Figure 2A), which suggests an abundance of aromatic amino acid residues (e.g., Phe, Tyr, and Trp) in the pooled fraction. In keeping with this study, a previous study on Chinese chestnut also found that the GFC fraction with the most prominent absorbance at 280 nm had the highest antioxidant activity among all GFC fractions [13].
Fig 2
Figure 2. Purification of the <3 kDa fraction by gel filtration chromatography (GFC). (A) Elution profile, (B) peptide content, (C) ABTS•+ scavenging activity (at 30 µg peptide/mL), and (D) H2O2 scavenging activity (at 150 µg peptide/mL) of pooled GFC fractions. TBARS values of negative control and GFC fractions (E) at 0.1 mg peptide/mL and (F) at 0.5 mg DM/mL. Data are mean ± standard errors (n = 3). For each bar chart, mean values denoted by different superscript letters are significantly different (p < 0.05) according to Tukey’s test.
In our GFC experiment, GF-II (intermediate molecular size) had the lowest antioxidant activity, whereas GF-I (greatest molecular size) and GF-III (smallest molecular size) had relatively higher antioxidant activities. Hence, our results suggest that the antioxidant potential of the GFC fractions is not directly related to their molecular size. This is in agreement with the lack of explicit relationship between antioxidant activity and molecular size among 81 corn gluten meal peptide fractions collected in a GFC experiment [14]. On the other hand, peptide content data and the different trends in the lipid peroxidation inhibitory activities of the pooled fractions when tested based on DM and peptide mass pointed to the presence of non-peptide constituents in the GFC fractions. Thus, further purification was desirable. Considering that GF-III was the richest in peptide content and to discover peptides containing aromatic amino acid residues from T1H, we proceeded to perform purification on GF-III.

4. Purification of GF-III by Strong-Cation-Exchange Solid-Phase Extraction

GF-III was further purified by strong-cation-exchange solid-phase extraction (SCX-SPE), producing six SPE fractions. As shown in Figure 3A, most of the peptide constituents of GF-III were found in 50 mM KCl fraction (0.9 mg peptide/mL), which was 22–118 times greater than the other five SPE fractions. The 50 mM KCl fraction showed relatively low or no ABTS•+ and H2O2 scavenging activities at the peptide concentrations tested (Figure 3B,C). Our result suggests that SCX-SPE has partitioned most of the non-antioxidant peptides and/or peptides with weak antioxidant activity into the 50 mM KCl fraction.
Antioxidants 10 01822 g003 550
Figure 3. Purification of the GF-III fraction by strong-cation-exchange solid-phase extraction (SPE). (A) Peptide concentration, (B) ABTS•+ scavenging activity (at 0.7 µg peptide/mL), and (C) H2O2 scavenging activity (at 10 µg peptide/mL) of SPE fractions. Data are mean ± standard errors (n = 3). For each bar chart, mean values denoted by different superscript letters are significantly different (p < 0.05) according to Tukey’s test.
The effectiveness of SCX-SPE in concentrating the antioxidant peptides into single fractions were also evident, as affirmed by the enhancement in antioxidant activity after the SPE step. Briefly, 30 µg peptide/mL of GF-III scavenged 57% of ABTS•+ (Figure 2C). After the purification of GF-III by SCX-SPE, the resultant 0 and 20 mM KCl fractions scavenged 35% and 22% ABTS•+ at a 43-fold lower concentration (0.7 µg peptide/mL), respectively (Figure 3B). By estimation, the 0 and 20 mM KCl fractions may be 26-fold and 17-fold stronger than GF-III as ABTS•+ scavengers, respectively. Other studies also showed 33% [15] and 44% [10] improvement in the ABTS•+ scavenging activity of a peptide fraction purified by the SCX-SPE. The potency of the 0 and 20 mM KCl fractions over the other SPE fractions as ABTS•+ scavenger may be attributed to the presence of negatively charged amino acids (e.g., Glu) [16] or proton-donating amino acids (e.g., Trp and Gln) [14]. The presence of such residues may impart antioxidant activity to peptides by transferring electrons or protons to free radicals [12]. For instance, rapeseed peptides predominantly made up of Glu (19.5%) were reported to have potent radical scavenging activity [16]. Corn gluten meal-derived peptides made up of 67% of Trp and Gln displayed high ABTS•+ scavenging activity [14].
A similar improvement in the antioxidant activity of SPE fractions following SCX-SPE was revealed by the H2O2 scavenging assay. For example, 150 µg peptide/mL of GF-III scavenged 65% H2O2 (Figure 2D). In contrast, at a 15-fold lower concentration (10 µg peptide/mL), the 0 and 200 mM KCl fractions scavenged more than 80% of H2O2 (Figure 3C). The 20 mM KCl fraction also scavenged 56% H2O2 when tested at 10 µg peptide/mL. Thus, based on theoretical calculations, our results imply a 13–21-fold improvement in the H2O2 scavenging activity of the 0, 20, and 200 mM KCl fractions resulting from the purification of GF-III by using SCX-SPE. Altogether, the 0, 20, and 200 mM KCl fractions potentially contained potent antioxidant peptides; thus, they were taken to peptide sequencing.

5. Identification and Characterization of Antioxidant Peptides

Liquid chromatography-tandem mass spectrometry analysis identified 29 peptide sequences comprising 6–14 residues (633.33 to 1517.81 Da) from the 0, 20, and 200 mM KCl fractions (Table 1). This range of peptide masses agrees with the observation that the molecular masses of food-derived antioxidant peptides commonly range between 500–1800 Da [12]. Twenty-three of the 29 peptides contain 11–56% aliphatic amino acid residues (Table 1). Such residues are responsible for the thermal stability of proteins [17]. Two thermal-stable antioxidant peptides WAFAPA and MYPGLA that were identified from the blue-spotted stingray, for instance, are composed of 50% and 33% of aliphatic residues, respectively [18]. Based on the comparison of the aliphatic index, 10 of the 29 peptides were likely superior to both WAFAPA and MYPGLA in terms of thermal stability (Table 1). The discovery of such peptides also supports our previous observation of the thermal stability of T1H, the protein hydrolysate from which the 29 peptides were purified. T1H retained its radical scavenging and ferric reducing activity at temperatures up to 100 °C [4]. These CS peptides that are likely to be thermal-stable can thus be utilized as alternatives for food additives to address the concerns regarding the food processing heat treatment.
Table 1. Physicochemical properties of the peptides identified from the 0, 20, and 200 mM KCl fractions.
SPE Fractions Peptides Measured m/z

[M + 2H]		2 Molecular Mass

(Da) 		a Aromatic Residues

(%) 		b Basic Residues

(%) 		b Hydrophobic Residues

(%) 		b Aliphatic Residues

(%) 		b Aliphatic Index b
0 mM KCl KRYFKR 449.28 896.57 33 67 33 0 0
PRVRVAGR 455.79 909.58 0 38 63 38 85
PVVWAAKR 463.79 925.57 13 25 75 50 98
QVASGPLQR 478.28 954.55 0 11 56 33 87
MAPRTPRK 478.78 955.57 0 38 50 13 13
NKVVKLMR 494.31 986.62 0 38 50 38 121
KVPLAVFSR 508.82 1015.64 11 22 67 44 119
LKKGSPLKR 513.84 1025.69 0 44 44 22 87
FQLKPVFR 517.82 1033.63 25 25
•+ similarly or more stably than could the four reference peptides. Peptides that bind stably to free radicals can neutralize them. For instance, FPLPSF that was predicted to bind to ABTS•+ has been experimentally demonstrated to quench ABTS•+ in vitro [20]. Furthermore, our prediction of WAFAPA binding to ABTS•+ more stably than could MYPGLA (Table 3) is also consistent with their relative in vitro antioxidant activity [18]. Altogether, our results suggest that the stronger ABTS•+ scavenging activities of the 0 and 20 mM KCl fractions, relative to that of the 200 mM KCl fraction, could be accounted for, at least in part, by the affinity of their seven peptides to ABTS•+.
Table 3. Binding affinities and types of interactions between 10 corn silk peptides and ABTS•+, in comparison with four reference peptides.
Peptides SPE Fractions Binding Affinity

(kcal/mol)		 Peptide Residues Interacting with ABTS•+ a
Hydrogen Bond Hydrophobic Interaction
MCFHHHFHK 20 mM KCl −4.8
63
25
85
THAVKGVVHK
538.34 1074.67 20 40 50 40 97
YTWKFKGR 543.31 1084.61 38 38 50 0 0
ARVPQQSYR 552.80 1103.61 11 22 44 22 43
VHFNKGKKR 557.34 1112.69 22 56 33 11 32
 value determined by liquid chromatography-tandem mass spectrometry. b Percentages of aromatic, basic, hydrophobic, and aliphatic residues as well as aliphatic index were computed by using Peptides Package in R. Aliphatic indices of reference peptides WAFAPA and MYPGLA as predicted by Peptides Package in R were 50 and 82, respectively.
Amino acid composition is a key factor influencing the antioxidant activity of peptides [5]. Hydrophobic residues made up 33–86% of the compositions of the 29 CS peptides (Table 1). The presence of hydrophobic residue-containing peptides may account for the lipid peroxidation inhibitory effect of T1H [4], as well as that of <3 kDa UF (Figure 1E) and GF-III (Figure 2E,F), the peptide fractions which the 29 peptides were purified from. Hydrophobic residues may enhance the interaction of antioxidant peptides with lipid-soluble free radicals, thus attenuating the progression of lipid peroxidation [5]. Lipid oxidation is one of the major contributors to the deterioration of food quality during food processing and storage [5]. Thus, these CS peptides, as well the CS hydrolysate and partially purified fractions containing them, may be useful in the preservation of lipid-rich foods. On the other hand, it has been reported that peptides with C-terminal Lys could act as potent H2O2 scavengers [19]. Thus, MAPRTPRK and THAVKGVVHK in the 0 mM KCl fraction, FMFFVYK and MCFHHHFHK in the 20 mM KCl fraction, as well as DFPGAK, AGFPLGK, and AMQQDK in the 200 mM KCl fraction may have contributed to the H2O2 scavenging activity of the three SPE fractions.
The 0 mM KCl fraction had the highest proportion of peptides containing aromatic residues (9 peptides), followed by the 200 mM KCl (4 peptides) and the 20 mM KCl fractions (3 peptides). Aromatic residues may promote the antioxidant activity of peptides by donating protons to the electron-deficient radicals [12]. Notably, the 0 mM KCl fraction had the highest number of basic residue-containing peptides and the highest percentage of basic residues in peptides (Table 1). Thus, the strongest ABTS•+ scavenging activity of the 0 mM KCl fraction may be attributed to its richness in peptides comprising aromatic and basic amino acids. Our result agrees with the finding that abundance in basic amino acids may account for the strong ABTS•+ scavenging activity of a Chinese chestnut peptide fraction [13].
As revealed by the AnOxPePred analysis, 10 CS peptides (MCFHHHFHK, NLEGYR, AGFPLGK, FMFFVYK, NMVPGR, PVVWAAKR, DFPGAK, FSCPLVMKGPNGLR, RHGSGR, and VHFNKGKKR) had comparable or higher free radical scavenger (FRS) scores relative to the four reference peptides VGPWQK, MYPGLA, FPLPSF and WAFAPA (Table 2). The four reference peptides were empirically proven as ABTS•+ scavengers [18][15][20]. Our results are in accordance with the finding that His, Trp, Tyr, and Pro are common in free-radical-scavenging peptides [21]. In this study, the four amino acids account for 11–44% of the residues making up the 10 CS peptides and the four reference peptides (Table 2). Notably, His-containing peptides were only found in the 0 mM KCl (THAVKGVVHK and VHFNKGKKR) and 20 mM KCl (RHGSGR and MCFHHHFHK) fractions, but none in the 200 mM KCl fraction (Table 1). This is in keeping with our observation that the 0 and 20 mM KCl fractions had at least 4-fold greater ABTS•+ scavenging activity than the 200 mM KCl (Figure 3B). Our results, therefore, support the role of His residues in imparting radical scavenging activity to peptides [12].
Table 2. Free radical scavenger (FRS) scores of corn silk peptides were identified from the three SPE fractions, in comparison with reference peptides.
Peptides SPE Fractions FRS Scores
MCFHHHFHK 20 mM KCl 0.68068
VGPWQK * - 0.52254
MYPGLA * - 0.49386
NLEGYR 200 mM KCl 0.48158
•+. Remarkably, all interactions formed between the best-binding-affinity MCFHHHFHK and ABTS•+ were contributed by the aromatic residues Phe and His (Table 3). Four CS peptides, namely VHFNKGKKR, PVVWAAKR, FSCPLVMKGPNGLR, and NMVPGR, were predicted to have the highest number of interactions with ABTS•+. Notwithstanding, the lack of participation of aromatic residues in the interactions between ABTS•+ and the two peptides FSCPLVMKGPNGLR and NMVPGR apparently made their binding to ABTS•+ 12–15% less stable relative to VHFNKGKKR and PVVWAAKR. Similarly, both WAFAPA and MYPGLA were predicted to form comparable numbers of interactions with ABTS•+. However, the lack of participation of aromatic residues in MYPGLA-ABTS•+ interaction may explain the reported weaker ABTS•+ scavenging activity of MYPGLA when compared with WAFAPA [18]. Moreover, we also observed the significant participation of basic residues in peptide-ABTS•+ interactions. Briefly, basic residues in 90% of basic residue-containing CS peptides were involved in the interactions with ABTS•+. Such interactions account for 33–80% of the total number of interactions between individual basic residue-containing peptides and ABTS•+. To further verify the role of the basic residues of peptides in binding to ABTS•+, in silico alanine substitution was performed on those that were involved in ABTS•+-peptide interactions, followed by docking of the alanine-substituted peptides to ABTS•+. The binding affinities of all CS peptides, except FSCPLVMKGPNGLR, were diminished upon alanine mutagenesis of selected basic residues in the peptides (Table 3 and Table 4). For instance, alanine substitution of His6 in MCFHHHFHK has resulted in a 15% reduction in the binding affinity of peptides towards ABTS•+. Besides, a decline of 24% in binding affinity of NMVPGR towards ABTS•+ was observed upon alanine substitution of Arg6. Our results suggest that the basic residues are likely to be critical in binding and stabilizing ABTS•+. This observation further reinforces our finding that the 0 mM KCl fraction with the highest number of basic residue-containing peptides displayed the strongest ABTS•+ scavenging activity (Table 1 and Figure 3B). Besides, Leu-ABTS•+ interactions were observed in 67% of Leu-containing CS peptides (Table 3). Our observation agrees with a previous report of the participation of Leu in the binding between antioxidant peptides and ABTS•+ [20].
Table 4. Binding affinities of corn silk peptides toward ABTS•+ upon alanine substitution of the basic residues that were involved in ABTS•+-peptide interactions.
Peptides a Basic Residues Mutant Peptides Binding Affinity (kcal/mol)
Table 5. Toxicity, allergenicity, and cell-penetrating ability predicted for selected corn silk peptides that have the same or higher affinity to Kelch-like ECH-associated protein 1, myeloperoxidase, and xanthine oxidase, in comparison with reference peptides.
Peptides Toxicity Allergenicity CPP Prediction
* Indicates reference peptides. CPP, cell-penetrating peptide.
The five aforementioned CS peptides successfully docked into Keap1 and interacted with 3–6 of the seven key residues known to be involved in Keap1-Nrf2 interactions (Table 6). Our analysis on the reference peptide DEQIPSHPPR agrees with a previous report of its interaction with the key residues Arg380, Asn382, and Arg415 of Keap1 [6]. The participation of the three residues was also observed in the interactions between Keap1 and CS peptides (NANSLAGPQR and SSPATGGSLR) (Table 6). Besides, the binding of NLEGYR to Keap1 via hydrogen bond, hydrophobic interaction, and the salt bridge was also found in the DEQIPSHPPR-Keap1 interaction (Table 6). Thus, the five CS peptides apparently have comparable Keap1-binding properties as DEQIPSHPPR and could potentially activate the Keap1/Nrf2 pathway, triggering cellular antioxidant defense.
Table 6. Binding affinities and types of interactions between Kelch-like ECH-associated protein 1 (Keap1) and five corn silk peptides predicted as non-toxic, non-allergenic and cell-penetrating peptides, in comparison with a reference peptide.
Peptides Binding Affinity

(kcal/mol)		 Interaction with Keap1 a  
Hydrogen Bond Hydrophobic Interaction Salt Bridge
- Phe3, His6, Phe7
AGFPLGK
200 mM KCl 0.44866
FMFFVYK 20 mM KCl 0.44397
NMVPGR 20 mM KCl 0.44319
PVVWAAKR
MCFHHHFHK 0 mM KCl 0.43744
His6 DFPGAK 200 mM KCl 0.43574
MCFHHAFHK FPLPSF * - 0.43352
FSCPLVMKGPNGLR 0 mM KCl 0.41864
WAFAPA *
NLEGYR −8.7 Arg415, −4.1 Arg483, Ser508, Gln530, Ser555 Tyr334, Ser363, Gly364, Leu365, Ala366, Arg415, Ile416, Gly417, Gly462, Phe478, Arg483, Ser508, Gly509, Ala510, Tyr525, Gln530, Ser555, Ala556, Leu557, Tyr572, 
VHFNKGKKR 0 mM KCl −4.7 Lys7, Arg9
-
0.41519
RHGSGR
VHFNKGKKR His2Val1, His2, Gly6, Lys7, Arg9
20 mM KCl
0.41088
TAPLSSKALKR 586.37 1170.73 0 27 45 36 89
VHFNKGKKR 0 mM KCl 0.41055 FSCPLVMKGPNGLR 759.91 1517.81 7 14 71 21 76
20 mM KCl RHGSGR 335.18 668.37 17 50 33 0 0
NMVPGR 337.17 672.34 0 17 67 17 48
FMFFVYK 491.25 980.50
NANSLAGPQR 200 mM KCl 0.40415
QVASGPLQR 0 mM KCl 0.40213
MAPRTPRK 0 mM KCl 0.39973 57 14 86 14
NDGPSR41
200 mM KCl 0.38760 MCFHHHFHK 612.27 1222.53 67 56 44 0 0
Phe577, Ser602, Gly603, Val604 VAFNKGKKR −4.8 PVVWAAKR 0 mM KCl −4.7 Arg8 (2) Val2, Trp4, Ala5, Ala6, Arg8
Arg415
NANSLAGPQR −8.2 Arg415 (3), Val418, Val465, Arg483 Ser363, Gly364, Leu365, Arg380, Asn382, Asn414, Arg415, Ile416, Gly417, Ile461, Gly462, Val463, Val465, Phe478, Arg483, Ser508, Gly509, Tyr525, Gln530, Ser555, Ala556, Ile559, Phe577, Gly603 - Lys7 VHFNKGAKR
NMVPGR−5.0 −8.1 Ser363, Leu365, Asn382, Ser602 Tyr334, Ser363, Gly364, Leu365, Ala366, Asn382, Arg415, Ile416, Ile461, Gly462, Ser508, Gly509, Ala510, Tyr525, Gln530, Ser555, Ala556, Ser602 - FMFFVYK 20 mM KCl −4.4 Lys7 Phe1, Phe3, Phe4, Lys7
Arg9 VHFNKGKKA −4.4
SSPATGGSLR −8.1 Ser363, Arg380, Asn414, Arg415, Ser431, Ser602 Tyr334, Gly364, Leu365, Arg380, Asn382, Asn414, Arg415, Ile416, Ser431, Gly433, His436, Gly462, Phe478, Arg483, Ser508, Gly509, Ala556, Ser602, Gly603 FSCPLVMKGPNGLR 0 mM KCl −4.2
- PVVWAAKR Arg8Arg14 (2)
NDGPSR −8.0 Arg415 (2), Ala510 Tyr334, Gly364, Leu365, Arg415Leu5, Lys8, Gly9, Pro10, Gly12, Arg14
PVVWAAKA −4.3 , Ile461, Gly462, Phe478, Ser508, Gly509, Tyr525, Ala556, Ser602, Gly603, Val604 NMVPGR 20 mM KCl Tyr334, Asn414, Arg415 (4), Ser431, Arg483 (3), Ser555 Tyr334, Ser363, RHGSGR Non-toxin Probable non-allergen CPP
-
DEQIPSHPPR *−4.1 Asn1, Arg6 (2) Asn1, Pro4, Gly5, Arg6
FMFFVYK Lys7 −8.0FMFFVYA −4.3 Arg380, Asn382, Asn414, Arg415, Ser431, Gly433, His436, Gly462, Phe478, Arg483, Ser508, Gly509, Tyr525, Ser555, Ala556, Tyr572, Phe577, Ser602 Arg483 (2) NLEGYR 200 mM KCl −4.1 - Tyr5, Arg6
RHGSGR 20 mM KCl −3.9 Arg1, Arg6 Arg1, Gly5, Arg6
YETLNR Non-toxin Probable non-allergen Non-CPP AGFPLGK 200 mM KCl −3.7 - Phe3, Pro4, Leu5
DFPGAK 200 mM KCl
FSCPLVMKGPNGLR
AGFPLGK Non-toxin Probable non-allergen Non-CPP −3.6 - Pro3, Gly4, Lys6
KVPLAVFSR Non-toxin Probable non-allergen Non-CPP FPLPSF * - −4.6 Phe1, Ser5
TAGASLVAR Non-toxinPhe1, Pro2, Leu3, Pro4, Ser5
Probable allergen Non-CPP WAFAPA * - −4.3
YTWKFKGR Non-toxin- Trp1, Ala4, Pro5
Probable allergen CPP VGPWQK * - −3.9 - Pro3, Trp4, Lys6
AMQQDK Non-toxin Probable allergen CPP MYPGLA * - −3.8 Pro3
MPPKSTR Non-toxin Probable allergen CPP200 mM KCl DFPGAK 317.66 633.33 17 17 67 17 17
Pro3, Leu5, Ala6 KRYFKR 0 mM KCl 0.38352
YETLNR 0.33529
LKKGSPLKR 0 mM KCl 0.32957
PRVRVAGR 0 mM KCl 0.32698
KVPLAVFSR 0 mM KCl 0.32525
TAGASLVAR 200 mM KCl 0.32285
TAPLSSKALKR 0 mM KCl 0.29320
NKVVKLMR 0 mM KCl 0.27437
* Indicates reference peptides.

6. Molecular Docking between CS Peptides and ABTS•+

Docking simulation was performed to clarify the interactions between ABTS•+ and the 10 CS peptides with the best FRS scores. All seven peptides originating from the 0 and 20 mM KCl fractions had higher binding affinities towards ABTS•+ than the two peptides (AGFPLGK and DFPGAK) from the 200 mM KCl fraction (Table 3). Five of the seven peptides (from 0 and 20 mM KCl fractions) were also stronger than NLEGYR (from 200 mM KCl fraction) in binding to ABTS•+. The overall trend is in accordance with the relative levels of in vitro ABTS•+ scavenging activity of the three SPE fractions (Figure 3B). Notably, the binding affinities of all seven peptides from the 0 and 20 mM KCl fractions were more negative than that of reference peptides MYPGLA. The binding energy of three peptides MCFHHHFHK, VHFNKGKKR, and PVVWAAKR was up to 21% more negative than all four reference peptides (Table 3). Taken together, the seven peptides originating from the 0 and 20 mM KCl fractions could bind to ABTS
* Indicates reference peptides. a Number in brackets indicates the number of interactions.
Our LigPlot+ analysis indicates significant participation of aromatic residues in CS peptide-ABTS•+ interactions (Table 3). For instance, aromatic residues in 67% of the aromatic residue-containing peptides could bind to ABTS•+ through hydrophobic interactions. Aromatic residue-ABTS•+ interactions made up 14–100% of the total number of interactions between individual aromatic residue-containing peptides and ABTS
NMVPGR
NDGPSR Non-toxin Probable non-allergen CPP
NLEGYR Non-toxin Probable non-allergen CPP
NMVPGR Non-toxin Probable non-allergen CPP
SSPATGGSLR Non-toxin Probable non-allergen CPP
NANSLAGPQR Non-toxin Probable non-allergen CPP
KRYFKR Non-toxin Probable non-allergen CPP
Lys8 FSCPLVMAGPNGLR −4.2
Arg14 FSCPLVMKGPNGLA −4.7
Arg6 NMVPGA −3.1
NLEGYR Arg6 NLEGYA −3.7
RHGSGR Arg1 AHGSGR −3.8
Arg6 RHGSGA −4.2
DFPGAK Lys6 DFPGAA −3.4
a Peptides are arranged in the same order as in Table 3.

7. Molecular Docking of Peptides on Keap1

Food-derived bioactive peptides, in addition to scavenging free radicals, can confer cellular protection by modulating the gene expression and activities of antioxidant and oxidant enzymes [5]. Given this, we conducted a docking-based screening experiment to unravel the potential of the 29 CS peptides identified in this study in interacting with cellular protein targets that can regulate the endogenous oxidant status: Keap1, MPO, and XO. Soy-derived DEQIPSHPPR was predicted in molecular docking study to interact stably with Keap1, in keeping with its demonstrated ability to disrupt Keap1-Nrf2 binding and increase Nrf2 levels in the nucleus [6]. Hence, DEQIPSHPPR was used as a reference peptide for comparison with CS peptides. Our docking results show that 13 of the 29 CS peptides could bind to Keap1 similarly or more stably than DEQIPSHPPR (Table S2 (could be found in https://www.mdpi.com/2076-3921/10/11/1822#supplementary)). Further in silico screening for low toxicity and allergenicity as well as high cell-penetrating potential narrowed down the 13 CS peptides to five, namely NDGPSR, NLEGYR, NMVPGR, SSPATGGSLR, and NANSLAGPQR (Table 5). Screening based on these parameters allows the search for CS peptides that might be able to cross the cell membrane barrier and block the Keap1-Nrf2 interaction in cells with minimal or no harmful effects. Unlike the five CS peptides, the reference peptide DEQIPSHPPR may elicit allergy (Table 5), hence it is less desirable for the application of functional food ingredients.
PVVWAAKR
Non-toxin
Probable allergen
CPP
DFPGAK
Non-toxin
Probable allergen Non-CPP
FMFFVYK Non-toxin Probable allergen Non-CPP
QVASGPLQR Non-toxin Probable allergen Non-CPP
200 mM KCl
0.37938
DEQIPSHPPR * Non-toxin Probable allergen Non-CPP
DTETGVPT * Non-toxin Probable non-allergenNDGPSR 323.15 644.29 0 17 33 0
FQLKPVFR0
0 mM KCl 0.37599 AGFPLGK 345.20 688.41 14 14 86 29 70
ARVPQQSYR 0 mM KCl 0.37580 AMQQDK 360.66 719.32 0 17 33 17 17
YTWKFKGR 0 mM KCl 0.36769 NLEGYR 376.19 750.38 17 17 50 17 65
AMQQDK 200 mM KCl 0.36324 YETLNR 398.20 794.41 17 17 33 17 65
SSPATGGSLR 200 mM KCl 0.35382 MPPKSTR 408.72 815.43 0 29 43 0
THAVKGVVHK0
0 mM KCl 0.35200 TAGASLVAR 423.25 844.49 0 11 67 56 109
MPPKSTR 200 mM KCl SSPATGGSLR 466.74 931.49 0 10 50 20 49
NANSLAGPQR 514.27 1026.55 0 10 50 30 59
a Molecular mass was calculated from the m/z
Non-CPP
VPY *
Non-toxin
Probable allergen
CPP
ACECD *
Non-toxin
Probable allergen
CPP
* Indicates reference peptide. a Number in brackets indicates the number of interactions. Residues in bold are key residues (Tyr334, Arg380, Arg415, Arg483, Tyr525, Tyr572, and Phe577) in the binding site of Keap1 for nuclear factor erythroid 2-related factor 2 [7].

8. Molecular Docking of Peptides on MPO

In this study, CS peptides were compared with the soy tripeptide VPY and false abalone-derived DTETGVPT in their affinity towards MPO. Oral administration of VPY was shown to induce a 4-fold reduction in the MPO activity of mice [22]. Meanwhile, DTETGVPT is a potential inhibitor of MPO, as revealed by molecular docking simulation [23]. Our results revealed that 12 of the 29 CS peptides had up to 23% stronger affinity to MPO when compared with DTETGVPT, but were all weaker than VPY (Table S2). Five of the 12 potential MPO-binding CS peptides, namely NDGPSR, NLEGYR, NMVPGR, KRYFKR, and RHGSGR, were found to have low toxicity, low allergenicity, and cell-penetrating potential (Table 5). The five CS peptides would thus have an advantage over the reference peptide VPY (probable allergen) and DTETGVPT (non-cell-penetrating peptide) (Table 5) in the context of the application as food additives or functional food ingredients.

The interactions between the five CS peptides and MPO active site residues were highly similar to those between the reference peptides (VPY and DTETGVPT) and MPO (Table 7). With the exemption of NLEGYR, CS peptides and reference peptides were all forming only the hydrophobic interaction with the key residues in MPO active site. Likewise, similar to the reference peptides, each CS peptide could interact with 4–5 of the seven key residues in the active site of MPO. These key residues contributed to the stability of the interaction between 7-benzyl-1H-[1,2,3]triazolo[4,5-b]pyridin-5-amine, the bound inhibitor in the MPO crystal, and the active site of MPO [24]. As observed in the two reference peptides, all the five CS peptides could bind directly to the heme moiety of MPO (Table 7). Blockage of the heme pocket of MPO could preclude the access of substrates to the MPO active site, suppressing the enzyme’s action-driving ROS production [25].

Table 7. Binding affinities and types of interactions between myeloperoxidase (MPO) and five corn silk peptides predicted as non-toxic, non-allergenic and cell-penetrating peptides, in comparison with two reference peptides.

PeptidesBinding Affinity

(kcal/mol)		Interaction with MPO
a
 
Hydrogen BondHydrophobic InteractionSalt Bridge
NMVPGR-6.6-
Phe99
, Thr100, Glu102, Glu116, Pro145, Phe147, Leu216, Pro220,
Arg239
, Glu242,
Phe366
,
Phe407
, Met411, Arg424, Hec606-
NLEGYR-6.5
His95
His95
,
Phe99
, Glu102, Glu116, Pro145, Phe146, Phe147, Pro220, Thr238,
Arg239
, Glu242,
Phe407
, Val410, Met411, Leu420, Hec606-
NDGPSR-6.3Glu102
Phe99
, Glu102, Glu116, Pro145, Phe146, Phe147, Pro220, Thr238,
Arg239
, Glu242,
Phe366
,
Phe407
, Met411, Leu415, Leu420, Hec606-
RHGSGR-6.2Thr100, Thr238
Phe99
, Thr100, Glu102, Pro145, Phe146, Phe147, Leu216, Pro220, Thr238,
Arg239
, Glu242,
Phe366
,
Phe407
, Met411, Leu415, Hec606Glu102 (5)
KRYFKR-5.5Thr100, Thr238
His95
,
Phe99
, Thr100, Glu102, Glu116, Pro145, Phe147, Pro220, Thr238,
Arg239
, Glu242,
Phe366
,
Phe407
, Val410, Met411, Leu415, Leu420, Hec606Glu102 (2)
VPY *-7.4-
His95
,
Phe99
, Thr100, Glu102, Pro220, Thr238,
Arg239
, Glu242,
Phe366
, Hec606-
DTETGVPT *-5.5Thr238
Phe99
, Thr100, Glu102, Phe147, Pro220, Thr238,
Arg239
, Glu242,
Phe366
,
Phe407
, Met411, Leu415, Leu420, Hec606-

* Indicates reference peptides. a Number in brackets indicates the number of interactions. Residues in bold are key residues (Gln91, His95, Phe99, Arg239, His336, Phe366, and Phe407) in the active site of MPO [24].

9. Molecular Docking of Peptides on XO

Only 14 of the 29 CS peptides were docked onto XO successfully, yielding negative values for binding affinity (Table S2). Docking of NDGPSR and DFPGAK onto XO involved the lowest binding energy, thus the strongest affinity, among the 14 peptides. Furthermore, NDGPSR and DFPGAK were predicted to bind equally stably to XO as was ACECD, the reference peptide. ACECD, an XO inhibitory peptide derived from Skipjack tuna hydrolysate, was reported to exert its inhibition by binding to the active site of XO [26]. In light of the predicted allergenicity and non-cell-penetrating potential of DFPGAK (Table 5), we proceeded to analyze the intermolecular interactions in only the NDGPSR-XO docked model.

As shown in Table 8, our LigPlot+ analysis revealed that NDGPSR could interact with catalytically critical residues (Glu802 and Arg880), substrate binding-residue (Phe914, Phe1009, and Thr1010), and the residues associated with the extended solvent-accessible channel leading to the molybdenum active center (Leu873, Val1011, Phe1013, and Leu1014) [27]. Most of such interactions are hydrophobic in nature. The dominance of hydrophobic interactions was also observed in our ACECD-XO docked model (Table 8). Meanwhile, NDGPSR could form hydrophobic interaction with Glu1261, an amino acid around the active center of XO, and contribute to the catalytic reaction of XO [26]. Moreover, as observed in ACECD, NDGPSR could also interact with Leu648 and Phe649 through hydrophobic interactions. The two residues are at the gate of the aforementioned solvent-accessible channel [27]. Interactions with Leu648 and Phe649 were reported to enhance the potency of quercetin as an XO inhibitor [27]. Altogether, our results suggest that NDGPSR can potentially occupy the catalytic center of XO, hindering the entry of XO substrates, thereby suppressing XO activity and ROS generation. In addition to their protective role in cells, antioxidant peptides with XO inhibitory activity are useful in reducing milk-fat oxidation in the dairy industry [28]. Thus, NDGPSR may also be developed into a potent antioxidant for the formulation of dairy products and other oxidation-prone foods.

Table 8. Binding affinity and types of interactions between xanthine oxidase (XO) and corn silk peptide NDGPSR, which was predicted to be a non-toxic, non-allergenic, and cell-penetrating peptide, in comparison with a reference peptide.

PeptidesBinding Affinity

(kcal/mol)		Interaction with XO
a
 
Hydrogen BondHydrophobic InteractionSalt Bridge
NDGPSR-5.2Ser876,
Thr1010
,
Val1011
Leu648, Phe649, Gly799,
Glu802
,
Leu873
, His875, Ser876,
Arg880
,
Phe914
,
Phe1009
,
Thr1010
,
Val1011
, Pro1012,
Phe1013
,
Leu1014
, Ala1078, Ala1079, Glu1261His875, Glu1261 (2)
ACECD *-5.2His875, Ser876Leu648, Phe649,
Glu802
,
Leu873
, His875, Ser876, Glu879,
Phe914
,
Phe1009
,
Thr1010
,
Val1011
, Pro1012,
Phe1013
,
Leu1014
-

* Indicates reference peptide. a Number in brackets indicates the number of interactions. Residues in bold are key residues (Glu802, Leu873, Arg880, Phe914, Phe1009, Thr1010, Val1011, Phe1013, and Leu1014) in the active site of XO [27].

Our in silico analysis revealed three multifunctional peptides that are also non-toxic, non-allergenic, and have cell-penetrating potential, namely NDGPSR, NLEGYR, and NMVPGR. Among the three, NDGPSR could be a potential inhibitor of Keap1-Nrf2 interaction, MPO, and XO. Models of NDGPSR docked to the three protein targets are shown in Figure 4. Moreover, NLEGYR and NMVPGR could be potential dual-function inhibitors of Keap1-Nrf2 interaction and MPO (Table S2). Antioxidant peptides possessing multiple functionalities likely have greater versatility and commercial value when compared to other antioxidant peptides [29]. In this context, the three multifunctional peptides, with their safety and cell-penetrating properties, are desirable candidates for the future development of functional food ingredients and/or health supplements.

Antioxidants 10 01822 g004 550

Figure 4. The docked models of NDGPSR interacting with (A) Keap1, (B) MPO, and (C) XO in 3D (top) and 2D (bottom) diagrams. In the 3D diagrams, NDGPSR is displayed in red; the heme moiety of MPO in (B) is displayed in blue. In the 2D diagrams, bonds of proteins are in orange, whereas those of peptides are in purple. Hydrophobic interactions, hydrogen bonds, and salt bridges are represented in red spoked arcs, green dashed lines, and red dashed lines, respectively.

10. Conclusions

In this study, 29 potential antioxidant peptides were purified and identified, for the first time, from a CS hydrolysate. The prevalence of aromatic and basic residues, in addition to binding affinity to ABTS·+, as revealed by molecular docking simulation, may account for the antioxidant activities of the peptides. Our in silico study also unraveled the potential of the peptides as inhibitors of Keap1-Nrf2 interaction, MPO and XO. NDGPSR stood out among the 29 peptides for its concurrent affinities towards the three protein targets, besides being predicted as non-toxic, non-allergenic, and having cell-penetrating potential. Taken together, our findings highlight the potential of CS as a source of antioxidant peptides with desirable properties for future applications in functional food and drug discovery. Future investigations by using in vitro and in vivo models are warranted for more in-depth exploration of CS-derived antioxidant peptides highlighted in this study.

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