References

1. Lorito, M.; Woo, S.L.; Harman, G.E.; Monte, E. Translational research on Trichoderma: From ’omics to the field. Annu. Rev. Phytopathol. 2010, 48, 395–417.
2. Druzhinina, I.S.; Seidl-Seiboth, V.; Herrera-Estrella, A.; Horwitz, B.A.; Kenerley, C.M.; Monte, E.; Mukherjee, P.K.; Zeilinger, S.; Grigoriev, I.V.; Kubicek, C.P. Trichoderma: The genomics of opportunistic success. Nat. Rev. Microbiol. 2011, 9, 749–759.
3. Sanz, L.; Montero, M.; Grondona, I.; Vizcaíno, J.A.; Llobell, A.; Hermosa, R.; Monte, E. Cell wall-degrading isoenzyme profiles of Trichoderma biocontrol strains show correlation with rDNA taxonomic species. Curr. Genet. 2004, 46, 277–286.
4. Vizcaíno, J.A.; Sanz, L.; Basilio, A.; Vicente, F.; Gutiérrez, S.; Hermosa, M.R.; Monte, E. Screening of antimicrobial activities in Trichoderma isolates representing three Trichoderma sections. Mycol. Res. 2005, 109, 1397–1406.
5. Keszler, Á.; Forgács, E.; Kótai, L.; Vizcaíno, J.A.; Monte, E.; García-Acha, I. Separation and identification of volatile components in the fermentation broth of Trichoderma atroviride by solid-phase extraction and gas chromatography-mass spectrometry. J. Chromatogr. Sci. 2000, 38, 421–424.
6. Vinale, F.; Sivasithamparam, K.; Ghisalberti, E.L.; Marra, R.; Woo, S.L.; Lorito, M. Trichoderma-plant-pathogen interactions. Soil Biol. Biochem. 2008, 40, 1–10.
7. Monte, E.; Hermosa, R. Deciphering biocontrol qualities and other plant beneficial traits in Trichoderma. In How Research Can Stimulate the Development of Commercial Biological Control Against Plant Diseases. Progress in Biological Control, 1st ed.; De Cal, A., Melgarejo, P., Magan, N., Eds.; Springer: Cham, Switzerland, 2020; Volume 21, pp. 95–108.
8. Illescas, M.; Rubio, M.B.; Hernández-Ruiz, V.; Morán-Diez, M.E.; Martínez de Alba, A.E.; Nicolás, C.; Monte, E.; Hermosa, R. Effect of inorganic N top dressing and Trichoderma harzianum seed-inoculation on crop yield and the shaping of root microbial communities of wheat plants cultivated under high basal N fertilization. Front. Plant Sci. 2020, 11, 575861.
9. Poveda, J.; Hermosa, R.; Monte, E.; Nicolás, C. Trichoderma harzianum favours the access of arbuscular mycorrhizal fungi to non-host Brassicaceae roots and increases plant productivity. Sci. Rep. 2019, 9, 1–11.
10. Hermosa, R.; Viterbo, A.; Chet, I.; Monte, E. Plant-beneficial effects of Trichoderma and of its genes. Microbiology 2012, 158, 17–25.
11. Conrath, U.; Beckers, G.J.M.; Langenbach, C.J.G.; Jaskiewicz, M.R. Priming for enhanced defense. Annu. Rev. Phytopathol. 2015, 53, 97–119.
12. Hermosa, R.; Rubio, M.B.; Cardoza, R.E.; Nicolás, C.; Monte, E.; Gutiérrez, S. The contribution of Trichoderma to balancing the costs of plant growth and defense. Int. Microbiol. 2013, 16, 69–80.
13. Bruce, T.J.A.; Matthes, M.C.; Napier, J.A.; Pickett, J.A. Stressful “memories” of plants: Evidence and possible mechanisms. Plant Sci. 2007, 173, 603–608.
14. Pastor, V.; Luna, E.; Mauch-Mani, B.; Ton, J.; Flors, V. Primed plants do not forget. Environ. Exp. Bot. 2013, 94, 46–56.
15. Shi, S.; Li, S.; Asim, M.; Mao, J.; Xu, D.; Ullah, Z.; Liu, G.; Wang, Q.; Liu, H. The Arabidopsis calcium-dependent protein kinases (CDPKs) and their roles in plant growth regulation and abiotic stress responses. Int. J. Mol. Sci. 2018, 19, 1900.
16. Conrath, U. Molecular aspects of defence priming. Trends Plant Sci. 2011, 16, 524–531.
17. Conrath, U.; Beckers, G.J.M.; Flors, V.; García-Agustín, P.; Jakab, G.; Mauch, F.; Newman, M.A.; Pieterse, C.M.J.; Poinssot, B.; Pozo, M.J.; et al. Priming: Getting ready for battle. Mol. Plant-Microbe Interact. 2006, 19, 1062–1071.
18. Pumplin, N.; Voinnet, O. RNA silencing suppression by plant pathogens: Defence, counter-defence and counter-counter-defence. Nat. Rev. Microbiol. 2013, 11, 745–760.
19. Sahu, P.P.; Pandey, G.; Sharma, N.; Puranik, S.; Muthamilarasan, M.; Prasad, M. Epigenetic mechanisms of plant stress responses and adaptation. Plant Cell Rep. 2013, 32, 1151–1159.
20. Pieterse, C.M.J.; Zamioudis, C.; Berendsen, R.L.; Weller, D.M.; Van Wees, S.C.M.; Bakker, P.A.H.M. Induced systemic resistance by beneficial microbes. Annu. Rev. Phytopathol. 2014, 52, 347–375.
21. Mattoo, A.J.; Nonzom, S. Endophytic fungi: Understanding complex cross-talks. Symbiosis 2021, 1–28.
22. Mendoza-Mendoza, A.; Zaid, R.; Lawry, R.; Hermosa, R.; Monte, E.; Horwitz, B.A.; Mukherjee, P.K. Molecular dialogues between Trichoderma and roots: Role of the fungal secretome. Fungal Biol. Rev. 2018, 32, 62–85.
23. Ramírez-Valdespino, C.A.; Casas-Flores, S.; Olmedo-Monfil, V. Trichoderma as a model to study effector-like molecules. Front. Microbiol. 2019, 10, 1030.
24. Alfiky, A.; Weisskopf, L. Deciphering Trichoderma–plant–pathogen interactions for better development of biocontrol applications. J. Fungi 2021, 7, 61.
25. Navazio, L.; Baldan, B.; Moscatiello, R.; Zuppini, A.; Woo, S.L.; Mariani, P.; Lorito, M. Calcium-mediated perception and defense responses activated in plant cells by metabolite mixtures secreted by the biocontrol fungus Trichoderma atroviride. BMC Plant Biol. 2007, 7, 1–9.
26. Omann, M.; Zeilinger, S. How a mycoparasite employs G-protein signaling: Using the example of Trichoderma. J. Signal Transduct. 2010, 2010, 1–8.
27. Zhong, C.L.; Zhang, C.; Liu, J.Z. Heterotrimeric G protein signaling in plant immunity. J. Exp. Bot. 2019, 70, 1109–1118.
28. Pandey, S. Heterotrimeric G-protein signaling in plants: Conserved and novel mechanisms. Annu. Rev. Plant Biol. 2019, 70, 213–238.
29. Tseng, Y.-H.; Rouina, H.; Groten, K.; Rajani, P.; Furch, A.C.U.; Reichelt, M.; Baldwin, I.T.; Nataraja, K.N.; Uma Shaanker, R.; Oelmüller, R. An endophytic Trichoderma strain promotes growth of its hosts and defends against pathogen attack. Front. Plant Sci. 2020, 11, 573670.
30. Bailey, B.A.; Bae, H.; Strem, M.D.; Crozier, J.; Thomas, S.E.; Samuels, G.J.; Vinyard, B.T.; Holmes, K.A. Antibiosis, mycoparasitism, and colonization success for endophytic Trichoderma isolates with biological control potential in Theobroma cacao. Biol. Control 2008, 46, 24–35.
31. Galletti, S.; Burzi, P.L.; Cerato, C.; Marinello, S.; Sala, E. Trichoderma as a potential biocontrol agent for Cercospora leaf spot of sugar beet. BioControl 2008, 53, 917–930.
32. Guo, Y.; Ghirardo, A.; Weber, B.; Schnitzler, J.-P.; Benz, J.P.; Rosenkranz, M. Trichoderma species differ in their volatile profiles and in antagonism toward ectomycorrhiza Laccaria bicolor. Front. Microbiol. 2019, 10, 891.
33. Oszako, T.; Voitka, D.; Stocki, M.; Stocka, N.; Nowakowska, J.A.; Linkiewicz, A.; Hsiang, T.; Belbahri, L.; Berezovska, D.; Malewski, T. Trichoderma asperellum efficiently protects Quercus robur leaves against Erysiphe alphitoides. Eur. J. Plant Pathol. 2021, 159, 295–308.
34. Rocha, S.L.; Evans, H.C.; Jorge, V.L.; Cardoso, L.A.O.; Pereira, F.S.T.; Rocha, F.B.; Barreto, R.W.; Hart, A.G.; Elliot, S.L. Recognition of endophytic Trichoderma species by leaf-cutting ants and their potential in a Trojan-horse management strategy. R. Soc. Open Sci. 2017, 4, 160628.
35. Kadota, Y.; Shirasu, K.; Zipfel, C. Regulation of the NADPH oxidase RBOHD during plant immunity. Plant Cell Physiol. 2015, 56, 1472–1480.
36. Morán-Diez, M.E.; Cardoza, R.E.; Gutiérrez, S.; Monte, E.; Hermosa, R. TvDim1 of Trichoderma virens is involved in redox-processes and confers resistance to oxidative stresses. Curr. Genet. 2010, 56, 63–73.
37. Montero-Barrientos, M.; Hermosa, R.; Cardoza, R.E.; Gutiérrez, S.; Monte, E. Functional analysis of the Trichoderma harzianum nox1 gene, encoding an NADPH oxidase, relates production of reactive oxygen species to specific biocontrol activity against Pythium ultimum. Appl. Environ. Microbiol. 2011, 77, 3009–3016.
38. Morán-Diez, E.; Hermosa, R.; Ambrosino, P.; Cardoza, R.E.; Gutiérrez, S.; Lorito, M.; Monte, E. The ThPG1 endopolygalacturonase is required for the Trichoderma harzianum-plant beneficial interaction. Mol. Plant-Microbe Interact. 2009, 22, 1021–1031.
39. Alonso-Ramírez, A.; Poveda, J.; Martín, I.; Hermosa, R.; Monte, E.; Nicolás, C. Salicylic acid prevents Trichoderma harzianum from entering the vascular system of roots. Mol. Plant Pathol. 2014, 15, 823–831.
40. Morán-Diez, E.; Rubio, B.; Domínguez, S.; Hermosa, R.; Monte, E.; Nicolás, C. Transcriptomic response of Arabidopsis thaliana after 24h incubation with the biocontrol fungus Trichoderma harzianum. J. Plant Physiol. 2012, 169, 614–620.
41. Feys, B.J.; Moisan, L.J.; Newman, M.A.; Parker, J.E. Direct interaction between the Arabidopsis disease resistance signaling proteins, EDS1 and PAD4. EMBO J. 2001, 20, 5400–5411.
42. Salminen, A.; Kauppinen, A.; Kaarniranta, K. AMPK/Snf1 signaling regulates histone acetylation: Impact on gene expression and epigenetic functions. Cell. Signal. 2016, 28, 887–895.
43. Shoresh, M.; Spivak, M.; Bernstein, N. Involvement of calcium-mediated effects on ROS metabolism in the regulation of growth improvement under salinity. Free Radic. Biol. Med. 2011, 51, 1221–1234.
44. Chen, J.; Harman, G.E.; Comis, A.; Cheng, G.-W. Proteins related to the biocontrol of Pythium damping-off in maize with Trichoderma harzianum Rifai. J. Integr. Plant Biol. 2005, 47, 988–997.
45. Yedidia, I.; Benhamou, N.; Chet, I. Induction of defense responses in cucumber plants (Cucumis sativus L.) by the biocontrol agent Trichoderma harzianum. Appl. Environ. Microbiol. 1999, 65, 1061–1070.
46. De Palma, M.; D’Agostino, N.; Proietti, S.; Bertini, L.; Lorito, M.; Ruocco, M.; Caruso, C.; Chiusano, M.L.; Tucci, M. Suppression Subtractive Hybridization analysis provides new insights into the tomato (Solanum lycopersicum L.) response to the plant probiotic microorganism Trichoderma longibrachiatum MK1. J. Plant Physiol. 2016, 190, 79–94.
47. Morán-Diez, M.E.; Tranque, E.; Bettiol, W.; Monte, E.; Hermosa, R. Differential response of tomato plants to the application of three Trichoderma species when evaluating the control of Pseudomonas syringae populations. Plants 2020, 9, 626.
48. De Palma, M.; Salzano, M.; Villano, C.; Aversano, R.; Lorito, M.; Ruocco, M.; Docimo, T.; Piccinelli, A.L.; D’Agostino, N.; Tucci, M. Transcriptome reprogramming, epigenetic modifications and alternative splicing orchestrate the tomato root response to the beneficial fungus Trichoderma harzianum. Hortic. Res. 2019, 6, 1–15.
49. Zehra, A.; Meena, M.; Dubey, M.K.; Aamir, M.; Upadhyay, R.S. Synergistic effects of plant defense elicitors and Trichoderma harzianum on enhanced induction of antioxidant defense system in tomato against Fusarium wilt disease. Bot. Stud. 2017, 58, 1–14.
50. Aamir, M.; Kashyap, S.P.; Zehra, A.; Dubey, M.K.; Singh, V.K.; Ansari, W.A.; Upadhyay, R.S.; Singh, S. Trichoderma erinaceum bio-priming modulates the WRKYs defense programming in tomato against the Fusarium oxysporum f. sp. lycopersici (Fol) challenged condition. Front. Plant Sci. 2019, 10, 911.
51. Herrera-Téllez, V.I.; Cruz-Olmedo, A.K.; Plasencia, J.; Gavilanes-Ruiz, M.; Arce-Cervantes, O.; Hernández-León, S.; Saucedo-García, M. The protective effect of Trichoderma asperellum on tomato plants against Fusarium oxysporum and Botrytis cinerea diseases involves inhibition of reactive oxygen species production. Int. J. Mol. Sci. 2019, 20, 2007.
52. Gullner, G.; Komives, T.; Király, L.; Schröder, P. Glutathione S-transferase enzymes in plant-pathogen interactions. Front. Plant Sci. 2018, 9, 1836.
53. Fernández, I.; Cosme, M.; Stringlis, I.A.; Yu, K.; Jonge, R.; van Wees, S.M.; Pozo, M.J.; Pieterse, C.M.J.; van der Heijden, M.G.A. Molecular dialogue between arbuscular mycorrhizal fungi and the nonhost plant Arabidopsis thaliana switches from initial detection to antagonism. N. Phytol. 2019, 223, 867–881.
54. Xu, Y.; Zhang, J.; Shao, J.; Feng, H.; Zhang, R.; Shen, Q. Extracellular proteins of Trichoderma guizhouense elicit an immune response in maize (Zea mays) plants. Plant Soil 2020, 449, 133–149.
55. Koornneef, A.; Pieterse, C.M.J. Cross talk in defense signaling. Plant Physiol. 2008, 146, 839–844.
56. Carrero-Carrón, I.; Rubio, M.B.; Niño-Sánchez, J.; Navas-Cortés, J.A.; Jiménez-Díaz, R.M.; Monte, E.; Hermosa, R. Interactions between Trichoderma harzianum and defoliating Verticillium dahliae in resistant and susceptible wild olive clones. Plant Pathol. 2018, 67, 1758–1767.
57. Beckers, G.J.M.; Jaskiewicz, M.; Liu, Y.; Underwood, W.R.; He, S.Y.; Zhang, S.; Conrath, U. Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana. Plant Cell 2009, 21, 944–953.
58. Su, J.; Yang, L.; Zhu, Q.; Wu, H.; He, Y.; Liu, Y.; Xu, J.; Jiang, D.; Zhang, S. Active photosynthetic inhibition mediated by MPK3/MPK6 is critical to effector-triggered immunity. PLoS Biol. 2018, 16, e2004122.
59. Pitzschke, A.; Schikora, A.; Hirt, H. MAPK cascade signalling networks in plant defence. Curr. Opin. Plant Biol. 2009, 12, 421–426.
60. Wiermer, M.; Feys, B.J.; Parker, J.E. Plant immunity: The EDS1 regulatory node. Curr. Opin. Plant Biol. 2005, 8, 383–389.
61. Shoresh, M.; Gal-On, A.; Leibman, D.; Chet, I. Characterization of a mitogen-activated protein kinase gene from cucumber required for Trichoderma-conferred plant resistance. Plant Physiol. 2006, 142, 1169–1179.
62. Contreras-Cornejo, H.A.; López-Bucio, J.S.; Méndez-Bravo, A.; Macías-Rodríguez, L.; Ramos-Vega, M.; Guevara-García, Á.A.; López-Bucio, J. Mitogen-activated protein kinase 6 and ethylene and auxin signaling pathways are involved in Arabidopsis root-system architecture alterations by Trichoderma atroviride. Mol. Plant-Microbe Interact. 2015, 28, 701–710.
63. Liu, Y.; Zhang, S. Phosphorylation of 1-aminocyclopropane-1-carboxylic acid synthase by MPK6, a stress-responsive mitogen-activated protein kinase, induces ethylene biosynthesis in Arabidopsis. Plant Cell 2004, 16, 3386–3399.
64. Meng, X.; Xu, J.; He, Y.; Yang, K.Y.; Mordorski, B.; Liu, Y.; Zhang, S. Phosphorylation of an ERF transcription factor by Arabidopsis MPK3/MPK6 regulates plant defense gene induction and fungal resistance. Plant Cell 2013, 25, 1126–1142.
65. Birkenbihl, R.P.; Diezel, C.; Somssich, I.E. Arabidopsis WRKY33 is a key transcriptional regulator of hormonal and metabolic responses toward Botrytis cinerea infection. Plant Physiol. 2012, 159, 266–285.
66. Mayo, S.; Cominelli, E.; Sparvoli, F.; González-López, O.; Rodríguez-González, A.; Gutiérrez, S.; Casquero, P.A. Development of a qPCR strategy to select bean genes involved in plant defense response and regulated by the Trichoderma velutinum–Rhizoctonia solani interaction. Front. Plant Sci. 2016, 7, 1109.
67. Jung, H.W.; Tschaplinski, T.J.; Wang, L.; Glazebrook, J.; Greenberg, J.T. Priming in systemic plant immunity. Science 2009, 324, 89–91.
68. Spoel, S.H.; Dong, X. How do plants achieve immunity? Defence without specialized immune cells. Nat. Rev. Immunol. 2012, 12, 89–100.
69. Pitzschke, A.; Datta, S.; Persak, H. Salt stress in Arabidopsis: Lipid transfer protein AZI1 and its control by mitogen-activated protein kinase MPK3. Mol. Plant 2014, 7, 722–738.
70. Segarra, G.; Van Der Ent, S.; Trillas, I.; Pieterse, C.M.J. MYB72, a node of convergence in induced systemic resistance triggered by a fungal and a bacterial beneficial microbe. Plant Biol. 2009, 11, 90–96.
71. Mathys, J.; De Cremer, K.; Timmermans, P.; Van Kerckhove, S.; Lievens, B.; Vanhaecke, M.; Cammue, B.P.A.; De Coninck, B. Genome-wide characterization of ISR induced in Arabidopsis thaliana by Trichoderma hamatum T382 against Botrytis cinerea infection. Front. Plant Sci. 2012, 3, 108.
72. Brotman, Y.; Landau, U.; Cuadros-Inostroza, Á.; Takayuki, T.; Fernie, A.R.; Chet, I.; Viterbo, A.; Willmitzer, L. Trichoderma-plant root colonization: Escaping early plant defense responses and activation of the antioxidant machinery for saline stress tolerance. PLoS Pathog. 2013, 9, e1003221.
73. Sáenz-Mata, J.; Salazar-Badillo, F.B.; Jiménez-Bremont, J.F. Transcriptional regulation of Arabidopsis thaliana WRKY genes under interaction with beneficial fungus Trichoderma atroviride. Acta Physiol. Plant. 2014, 36, 1085–1093.
74. Medeiros, H.A.; De Araújo Filho, J.V.; Freitas, L.G.; Castillo, P.; Rubio, M.B.; Hermosa, R.; Monte, E. Tomato progeny inherit resistance to the nematode Meloidogyne javanica linked to plant growth induced by the biocontrol fungus Trichoderma atroviride. Sci. Rep. 2017, 7, 1–13.
75. Rubio, M.B.; Martínez de Alba, A.E.; Nicolás, C.; Monte, E.; Hermosa, R. Early root transcriptomic changes in wheat seedlings colonized by Trichoderma harzianum under different inorganic nitrogen supplies. Front. Microbiol. 2019, 10, 2444.
76. Dou, K.; Wang, Z.; Zhang, R.; Wang, N.; Fan, H.; Diao, G. Cloning and characteristic analysis of a novel aspartic protease gene Asp55 from Trichoderma asperellum ACCC30536. Microbiol. Res. 2014, 169, 915–923.
77. Yu, W.; Mijiti, G.; Huang, Y.; Fan, H.; Wang, Y.; Liu, Z. Functional analysis of eliciting plant response protein Epl1-Tas from Trichoderma asperellum ACCC30536. Sci. Rep. 2018, 8, 1–13.
78. Banerjee, A.; Roychoudhury, A. WRKY proteins: Signaling and regulation of expression during abiotic stress responses. Sci. World J. 2015, 2015, 807560.
79. Wang, D.; Amornsiripanitch, N.; Dong, X. A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. PLoS Pathog. 2006, 2, e123.
80. Zhang, Y.; Lee, C.-W.; Wehner, N.; Imdahl, F.; Svetlana, V.; Weiste, C.; Dröge-Laser, W.; Deeken, R. Regulation of oncogene expression in T-DNA-transformed plant cells. PLoS Pathog. 2015, 11, e1004620.
81. Gao, X.; Cox, K.L.; He, P. Functions of calcium-dependent protein kinases in plant innate immunity. Plants 2014, 3, 160–176.
82. Alvarez-Venegas, R.; Abdallat, A.A.; Guo, M.; Alfano, J.R.; Avramova, Z. Epigenetic control of a transcription factor at the cross section of two antagonistic pathways. Epigenetics 2007, 2, 106–113.
83. Jaskiewicz, M.; Conrath, U.; Peterhälnsel, C. Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response. EMBO Rep. 2011, 12, 50–55.
84. Phukan, U.J.; Jeena, G.S.; Shukla, R.K. WRKY transcription factors: Molecular regulation and stress responses in plants. Front. Plant Sci. 2016, 7, 760.
85. Barco, B.; Clay, N.K. Hierarchical and dynamic regulation of defense-responsive specialized metabolism by WRKY and MYB transcription factors. Front. Plant Sci. 2020, 10, 1775.
86. Shim, J.S.; Choi, Y.D. Direct regulation of WRKY70 by AtMYB44 in plant defense responses. Plant Signal. Behav. 2013, 8, e24509.
87. Shin, R.; Burch, A.Y.; Huppert, K.A.; Tiwari, S.B.; Murphy, A.S.; Guilfoyle, T.J.; Schachtman, D.P. The Arabidopsis transcription factor MYB77 modulates auxin signal transduction. Plant Cell 2007, 19, 2440–2453.
88. Van der Ent, S.; Verhagen, B.W.M.; Van Doorn, R.; Bakker, D.; Verlaan, M.G.; Pel, M.J.C.; Joosten, R.G.; Proveniers, M.C.G.; Van Loon, L.C.; Ton, J.; et al. MYB72 is required in early signaling steps of rhizobacteria-induced systemic resistance in Arabidopsis. Plant Physiol. 2008, 146, 1293–1304.
89. Kranz, H.D.; Denekamp, M.; Greco, R.; Jin, H.; Leyva, A.; Meissner, R.C.; Petroni, K.; Urzainqui, A.; Bevan, M.; Martin, C.; et al. Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. Plant J. 1998, 16, 263–276.
90. Kazan, K.; Manners, J.M. MYC2: The master in action. Mol. Plant 2013, 6, 686–703.
91. Abe, H.; Urao, T.; Ito, T.; Seki, M.; Shinozaki, K.; Yamaguchi-Shinozaki, K. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 2003, 15, 63–78.
92. Zhai, Q.; Li, C. The plant Mediator complex and its role in jasmonate signaling. J. Exp. Bot. 2019, 70, 3415–3424.
93. Çevik, V.; Kidd, B.N.; Zhang, P.; Hill, C.; Kiddle, S.; Denby, K.J.; Holub, E.B.; Cahill, D.M.; Manners, J.M.; Schenk, P.M.; et al. MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis. Plant Physiol. 2012, 160, 541–555.
94. Caarls, L.; Van Der Does, D.; Hickman, R.; Jansen, W.; Van Verk, M.C.; Proietti, S.; Lorenzo, O.; Solano, R.; Pieterse, C.M.J.; Van Wees, S.C.M. Assessing the role of ETHYLENE RESPONSE FACTOR transcriptional repressors in salicylic acid-mediated suppression of jasmonic acid-responsive genes. Plant Cell Physiol. 2017, 58, 266–278.
95. Liu, Y.; Du, M.; Deng, L.; Shen, J.; Fang, M.; Chen, Q.; Lu, Y.; Wang, Q.; Li, C.; Zhai, Q. MYC2 regulates the termination of jasmonate signaling via an autoregulatory negative feedback loop. Plant Cell 2019, 31, 106–127.
96. Wang, H.; Li, S.; Li, Y.; Xu, Y.; Wang, Y.; Zhang, R.; Sun, W.; Chen, Q.; Wang, X.J.; Li, C.; et al. MED25 connects enhancer–promoter looping and MYC2-dependent activation of jasmonate signalling. Nat. Plants 2019, 5, 616–625.
97. Chen, R.; Jiang, H.; Li, L.; Zhai, Q.; Qi, L.; Zhou, W.; Liu, X.; Li, H.; Zheng, W.; Sun, J.; et al. The Arabidopsis Mediator subunit MED25 differentially regulates jasmonate and abscisic acid signaling through interacting with the MYC2 and ABI5 transcription factors. Plant Cell 2012, 24, 2898–2916.
98. Raya-González, J.; Ortiz-Castro, R.; Ruiz-Herrera, L.F.; Kazan, K.; López-Bucio, J. Phytochrome and flowering time1/mediator25 regulates lateral root formation via auxin signaling in Arabidopsis. Plant Physiol. 2014, 165, 880–894.
99. Peñuelas, M.; Monte, I.; Schweizer, F.; Vallat, A.; Reymond, P.; García-Casado, G.; Franco-Zorrilla, J.M.; Solano, R. Jasmonate-related MYC transcription factors are functionally conserved in Marchantia polymorpha. Plant Cell 2019, 31, 2491–2509.