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Zhou, V. CLCNKA Gene. Encyclopedia. Available online: (accessed on 23 June 2024).
Zhou V. CLCNKA Gene. Encyclopedia. Available at: Accessed June 23, 2024.
Zhou, Vicky. "CLCNKA Gene" Encyclopedia, (accessed June 23, 2024).
Zhou, V. (2020, December 24). CLCNKA Gene. In Encyclopedia.
Zhou, Vicky. "CLCNKA Gene." Encyclopedia. Web. 24 December, 2020.

chloride voltage-gated channel Ka


1. Normal Function

The CLCNKA gene belongs to the CLC family of genes, which provide instructions for making chloride channels. These channels, which transport negatively charged chlorine atoms (chloride ions), play a key role in a cell's ability to generate and transmit electrical signals. Some CLC channels regulate the flow of chloride ions across cell membranes, while others transport chloride ions within cells.

The CLCNKA gene provides instructions for making a chloride channel called ClC-Ka. These channels are found predominantly in the kidneys. ClC-Ka is one of several proteins that work together to regulate the movement of ions into and out of kidney cells. The transport of chloride ions by ClC-Ka channels is part of the mechanism by which the kidneys reabsorb salt (sodium chloride or NaCl) from the urine back into the bloodstream. The retention of salt affects the body's fluid levels and helps maintain blood pressure.

ClC-Ka channels are also located in the inner ear, where they play a role in normal hearing.

2. Health Conditions Related to Genetic Changes

2.1. Bartter syndrome

Several people with Bartter syndrome have had mutations in both the CLCNKA gene and a closely related gene called CLCNKB. The CLCNKB gene provides instructions for making a very similar chloride channel, ClC-Kb, that is also found in the kidneys and inner ear. A combination of CLCNKA and CLCNKB gene mutations causes a life-threatening form of the disorder called Bartter syndrome type IV. This condition is also known as antenatal Bartter syndrome with sensorineural deafness because affected individuals have hearing loss caused by abnormalities in the inner ear.

Mutations in the CLCNKA and CLCNKB genes prevent the ClC-Ka and ClC-Kb channels from transporting chloride ions in the kidneys. As a result, the kidneys cannot reabsorb salt normally and excess salt is lost through the urine (salt wasting). The abnormal salt loss disrupts the normal balance of ions in the body. This imbalance underlies many of the major features of Bartter syndrome, including a failure to grow and gain weight at the expected rate (failure to thrive), dehydration, constipation, and increased urine production (polyuria). A loss of ClC-Ka and ClC-Kb function in the inner ear is responsible for the hearing loss characteristic of Bartter syndrome type IV.

2.2. Other Disorders

Studies suggest that several normal variants (polymorphisms) in the CLCNKA gene may be associated with salt-sensitive hypertension, a form of high blood pressure related to increased levels of salt in the blood. However, this association between CLCNKA polymorphisms and hypertension has not been confirmed. Changes in the CLCNKA gene may affect blood pressure by altering the kidneys' ability to reabsorb salt into the bloodstream.

3. Other Names for This Gene

  • chloride channel Ka
  • chloride channel protein ClC-Ka
  • chloride channel, kidney, A
  • chloride channel, voltage-sensitive Ka
  • ClC-K1
  • CLCK1
  • hClC-Ka


  1. Barlassina C, Dal Fiume C, Lanzani C, Manunta P, Guffanti G, Ruello A, BianchiG, Del Vecchio L, Macciardi F, Cusi D. Common genetic variants and haplotypes in renal CLCNKA gene are associated to salt-sensitive hypertension. Hum Mol Genet.2007 Jul 1;16(13):1630-8.
  2. Kieferle S, Fong P, Bens M, Vandewalle A, Jentsch TJ. Two highly homologousmembers of the ClC chloride channel family in both rat and human kidney. ProcNatl Acad Sci U S A. 1994 Jul 19;91(15):6943-7.
  3. Krämer BK, Bergler T, Stoelcker B, Waldegger S. Mechanisms of Disease: thekidney-specific chloride channels ClCKA and ClCKB, the Barttin subunit, and theirclinical relevance. Nat Clin Pract Nephrol. 2008 Jan;4(1):38-46. Review.
  4. Nozu K, Inagaki T, Fu XJ, Nozu Y, Kaito H, Kanda K, Sekine T, Igarashi T,Nakanishi K, Yoshikawa N, Iijima K, Matsuo M. Molecular analysis of digenicinheritance in Bartter syndrome with sensorineural deafness. J Med Genet. 2008Mar;45(3):182-6. doi: 10.1136/jmg.2007.052944.
  5. Schlingmann KP, Konrad M, Jeck N, Waldegger P, Reinalter SC, Holder M,Seyberth HW, Waldegger S. Salt wasting and deafness resulting from mutations intwo chloride channels. N Engl J Med. 2004 Mar 25;350(13):1314-9.
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Update Date: 24 Dec 2020
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