Concerns about water, food, and energy systems are rapidly growing due to differing regional availabilities and their impact on the interdependences amongst themselves [15,18]. WEF elements are essential for human life, sustainable development, and social equality [19]. In this sense, ensuring their security is a crucial activity concerning every individual worldwide.

Given that, the need for the integrated analysis of natural elements is not a novelty in the scientific literature. In this sense, some authors affirmed that WEF elements should be evaluated in an integrated manner. This concept is considered the first attempt at this new approach [20,21,22,23]. However, the WEF nexus concept was only launched in 2011, when it was incorporated into an international discussion on sustainable development by the Stockholm Environment Institute [12] and the World Economic Forum [13]. According to Hoff [12], the WEF nexus implies that water availability, energy production/consumption, and food security are inextricably linked. Consequently, actions in any one area have impacts on the others [19]. In addition, the World Economic Forum [13] affirms that focusing on the joint promotion of food security, in addition to water and energy accessibility, is the meaning of nexus thinking. These interlinkages, and the criticality of the scarcity of any of the three resources and its impact on the others, emphasize the need to manage them jointly and more efficiently [24].

Such a nexus approach can support the transition to implement the Sustainable Development Goals (SDGs)—Agenda 2030 [25]. In this sense, scientific literature has plenty of studies linking WEF nexus implementation with the SDGs, performing better in regional sustainability [26], for legal challenges [27], and for rural communities [28], among other uses. Furthermore, this addition should reduce environmental impacts and generate additional benefits that outweigh the integration across sectors, enhancing, for instance, circular economy implementation [29]. Such gains should appeal to national interest and encourage governments, private sectors, and civil society to engage [30]. In practical terms, this approach can represent the action required in bioeconomy to implement real solutions in sustainability actions [31].

Many scientific articles have tried to express some practical examples of how to implement this methodology. Saladini et al. [26] selected 12 indicators to monitor the Mediterranean area called the Partnership for Research and Innovation in the Mediterranean Area, based on the Sustainable Development Goals, which can be directly related to boosting sustainable business innovation [32]. Hussien et al. [33] assessed the impact of WEF elements using a risk-based method. Bijl et al. [34] showed differences in physical trade production, distance, and volume using indicators. Karan et al. [35] created indices based on the UN-Habitat’s City Prosperity Index that specifically integrate the nexus-relevant indices into a weighted equity index. El-Gafy [36] proposed six indicators in order to quantify the nexus as a strategic tool applied to crop production. AbdelHady et al. [37] proposed three output indicators, agriculture, aquaculture, and net energy production, to assess the value of different ecosystem health conditions under three water management scenarios.

Additionally, managing water, energy, and food without efficient and synergistic actions may increase the risk of shortages. Consequently, one opportunity to improve the sustainable use of these sources is investigating the integration of the water–energy–food nexus with quality and business excellence initiatives.

Given the mentioned scientific gap in integrating the WEF nexus with the principles of quality and excellence, the use of BEMs has been considered. This decision is based on the understanding that these frameworks offer a clear opportunity for the development of a quality and continuous improvement mindset that can be aligned with needs and the best sustainability practices [8,38,39]. Regarding the agro-industrial sector, they are aligned with a major impact [40], and their actions can be responsible for proper natural resource management [41]. In this sense, excellence initiatives center on meeting stakeholders’ needs and expectations, widening previous scopes of quality-oriented initiatives [42] and focusing on creating sustainable value for all “interested” parties. They have been used by organizations worldwide to improve their performance and achieve improved business results.

Excellence models are most widely used by organizations for self-assessment and improvement, including targeting sustainability [39], with companies opting to adapt and customize them in search of competitive advantages [17]. They promote a longitudinal management philosophy, highlighting a set of principles that orient managers’ and associates’ behaviors in the long-term, fostering continuous improvement [43]. BEMs focus on offering insights for organizations to manage processes, tools, or techniques, both old or new, with the goal of building value from new opportunities and achieving superior organizational results [44].

However, and regardless of their extensive use, there is still limited integration of the topic of environmental sustainability in excellence frameworks, in this particular case tackling the use of the WEF nexus approach. Despite other scientific authors cited in this research showing a growing pressure for the development of new models, the truth is that economic, social, and environmental sustainability are still often left outside of the scope of some major excellence models [45], although this situation is also changing. Thus, research on business and operational excellence does not usually include a clear focus on environmental sustainability.

Accordingly, there is a clear aim for promoting specific models for the deployment of sustainability-focused excellence in different industrial sectors. In the specific scope of this work—focusing on water, energy, and food as critical issues and looking specifically at the agro-industrial sector—this model proposes to integrate excellence and sustainability because of the WEF nexus.