Potential Infectivity of the Water Samples

Effect on Vero E6 Cultures and Production of Putative Viral Particles

Thirty-four concentrated samples from water collected in 2019, between January and August, and covering all sampling sites, were considered for infectivity assays in Vero E6 cultures. Only samples previously identified by RT-qPCR as positive for HEV RNA were selected, except when the related sample (collected on the same date in the associated water matrix) was positive.

Most cultures (19 in 32), each one inoculated with 0.5 mL of a water sample, did not develop cytopathic effects (CPEs) during the incubation period (15 days). Nevertheless, putative viral particles (pVPs) from this first passage were collected (supernatants of "infected" cultures) and used to "infect" new Vero E6 cultures. From these, 17 developed CPEs within 2–6 days post-inoculation; these second passage pVPs in the supernatants from cultures displaying, or not, CPEs, were collected, concentrated (for 6 h at 17,000× g, and 4 ⁰C) and subjected to RNA extraction and purification.

RT-qPCR Evaluation of Putative Infectious HEV Produced in Vero E6 Cultures

RNA extracted from pVPs produced as referred to above, was subjected to RT-qPCR, carried out with CeeramTools Hepatitis E kit (bioMérieux; Marcy-l’Etoile, France). HEV infectivity was confirmed by RT-qPCR positive results that met the quality criteria established by the mentioned kit.

From the samples evaluated, 18 were related samples from the river and WTP_R (eight from each) (Table 3), eight from the dam reservoir and WTP_D (four from each) (Table 4), and six were from the sampling point in the distribution network (Table 5). HEV infectivity was confirmed in samples from all matrices (globally 25%): 3/13 (23.0%) from surface water were positive (two from the river and one from the dam reservoir) as well as 5/18 (27.7%) from drinking water (three from WTP_R, one from WTP_D and one from the sampling point in the distribution network) (Table 3, Table 4 and Table 5). 

Table 3. Evaluation of related concentrated water samples (river and WTP_R) for the presence of HEV RNA and infectious particles.

Table 4. Evaluation of related concentrated water samples (dam reservoir and WTP_D) for the presence of HEV RNA and infectious particles.

Table 5. Evaluation of concentrated water samples from a sampling point in the distribution network, for the presence of HEV RNA and infectious particles.

It was possible to determine that 1) most positive samples for HEV infectivity had also tested positive for HEV RNA (exceptions were WTP_R from August and dam reservoir from June) and 2) positive samples for HEV infectivity were frequently found in related samples, i.e., in river/WTP_R and dam reservoir/WTP_D sampled on the same date; one exception was found in river/WTP_R from May (only WTP_R was positive for infectious HEV) (Table 3, Table 4 and Table 5). Moreover, a relationship was not evidenced between the number of RNA copies detected in a water sample and its potential infectivity because, from the 11 samples presenting more than 1000 gc/L, only one (river from June) evidenced infectivity; values of gc/L between 0 and 428 had been found in all the others able to produce infectious HEV in Vero E6 cells.

Discussion

This study followed a complex approach to assess the presence of HEV, starting from high volumes of water (EPA Method 1615 of the United States Environmental Protection Agency [41]) and combining, in the same procedure, the possibility to detect viral RNA by RT-qPCR as well as evaluate infectivity. The use of cell cultures overcame the limitation of evaluations based only on RT-qPCR. In fact, RT-qPCR has been increasingly used to detect enteric viruses in water and food samples, with high specificity/sensitivity and the possibility of obtaining results in less than four hours [3,48,49]. However, this methodology does not allow assessing the infectivity associated with the viral genomes detected in the reaction [3,25,40]. Beyond the confirmation of viral genomes, it is crucial in the evaluation of risks to public health, to determine whether they correspond to viral particles with the ability to infect human cells [48,49,50,51]. Despite being expensive and time consuming, relying on cell cultures is the most used standard method for assessing the infectivity of viral particles [3,6,52].

This one-year survey evaluated the presence of HEV in concentrated samples from two bodies of water (a river and a dam reservoir) and from the drinking water sampled on their water treatment plants (WTP_R and WTP_D, respectively) at the end of the treatment process. A mammal cell line (Vero E6) derived from African green monkey (Cercopithecus aethiops) kidney was used, for the first time, to assay the potential infectivity of water samples where HEV RNA had been detected by RT-qPCR. The rationale for the utilization of this cell line was its capability to replicate many different viruses [46,53], also taking into account that HEV has a large host range [12,15]. This approach effectively resulted in the detection of infectious HEV in several samples, by more or less evident induction of CPEs in cultured cells and subsequent confirmation of HEV replication through RT-qPCR to RNA extracted from extracellular putative viral particles. Our results agree with a recent study [54] demonstrating that a wild-derived HEV strain replicated in Vero cells, the cell line from which Vero E6 was derived (46).

HEV RNA was detected in concentrated samples from the two bodies of water and from drinking water (Entry _HEV genomic RNA detection), and in an infectious state in several of these samples.

Although the peak HEV RNA concentration was found in April, both in the river and in the dam reservoir, infectious HEV was only detected in June, when HEV RNA concentrations were high in the river (>1000 gc/L) and zero in the dam reservoir, suggesting inexistence of a direct association between the number of detected RNA copies and potential infectivity.

Out of the 18 concentrated drinking water samples selected for evaluation of HEV infectivity, five were positive. Drinking water from WTP_R presented the highest number of infectious samples (three), followed by WTP_D and the water from the point in the distribution network, both with only one infectious sample. Infectious HEV was detected in samples collected between May and August, after the peak of HEV RNA copies, as also observed in the bodies of water. Once again, no clear relationship was found between infectivity and number of HEV RNA copies detected per liter of sampled water.

Even though most of the results did not evidence contradictory aspects, a few should be discussed. One unexpected result was the infectivity of two samples (one from the dam reservoir and the other from WTP_R) originally identified as negative for HEV RNA. This may be explained by eventual mishaps during original RNA extraction procedures and emphasizes the relevance of evaluating results achieved by independent approaches. The detection of an infectious drinking water sample (WTP_R) was also unexpected, when the sampled water from its source (river) did not show infectivity. This may be explained by the large differences in the water volumes subjected to sampling: 1300 L in WTP_R and 152 L in the river. It should be noted that the positive result of infectivity in WTP_R means that HEV was also present in the river to such an extent that infectivity remained after treatment.

The results showing the presence of infectious HEV in concentrated samples of drinking water evidence the need to further investigate eventual threats to human health. It is worth noting that Vero E6 cultures were inoculated with 0.5 mL of concentrated (40×, in average) drinking water samples, equivalent to approximately 17.5 L of the sampled water (from a total of 1400 L, in average), while healthy individuals drink approximately two liters of water each day [60].

Finally, climate change will certainly increase the frequency of pathogens in water systems worldwide, whether due to the occurrence of floods, sewage contamination or the scarcity of safe drinking water sources [3]. In this context and considering the results obtained in this study, monitoring the presence of HEV and other viruses in water supply and distribution systems is strongly advisable. Similar approaches should be conducted in the future, increasing the sampling effort and implementing the application of the quantitative microbial risk assessment (QMRA) [69].

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The article has been published on 10.3390/microorganisms8050761