Imprinted SNORD small nucleolar RNAs (snoRNAs) within the PWS-locus were originally identified two decades ago
[128]. Based on the presence of conserved C and D sequence motifs, these snoRNAs were assigned to the subclass of 2′-O-methylation guide C/D box snoRNAs. However, due to the apparent lack of any significant complementarities to classical snoRNA target molecules (rRNAs, snRNA) they are referred to as “orphan” snoRNAs
[129]. The human PWS region harbors seven
SNORD genes and families:
SNORD107,
SNORD64,
SNORD108,
SNORD109A,
SNORD116,
SNORD115 and
SNORD109B. The corresponding mouse locus contains the orthologous genes
Snord107,
Snord64,
Snord116 and
Snord115. Most snoRNAs from the PWS-locus are processed from introns of a long primary non-protein coding U-UBE3A-AS transcript (U-Ube3a-AS in mouse) (). Both the human and murine genes are paternally imprinted. In human, SNORD116 and SNORD115 genes represent tandemly repeated arrays comprised of 29 and 48 copies, respectively
[129].
SNORD116 copies are located within introns flanked by the repetitive
IPW-A exons of the
U-UBE3A-AS transcript (A).
SNORD115 copies are embedded between repetitive
IPW-G exons (A). In mice, 66 copies of
Snord116 are distributed in the introns of 67
Ipw-A exons (C). However, due to an assembly gap of approximately 50 kb inside the mouse
Snord116 region, the exact number of repeats is yet to be determined. Although
SNORD116 displays a high degree of sequence similarity between different mammalian species
[130], conventional targets on rRNAs cannot be identified
[128][129]. In rodents, expression of the PWS locus encoded snoRNAs is restricted to neurons, while in humans they are most abundant in brain but also expressed in other tissues
[127].
11.1. The First Mouse Model Harboring the Deletion of the PWS Critical Region (PWScrm+/p−)
Analysis of the aforementioned mouse models that abolished the expression of single or multiple genes predicted PWS critical region (
PWScr) within the
Snord116 gene cluster
[131]. To investigate the putative contribution of
Snord116 to the PWS phenotype in vivo, two mouse models were generated. The first model harbored a ~300 kb genomic deletion (UCSC, GRCm39/mm39 chr7:59,277,590-59,580,881) of the
Snord116 and
Ipw-A gene arrays and was designated as
PWScr deletion model ( C,D; )
[42].
PWScrm+/p− pups displayed significant growth retardation starting from postnatal day 5 lasting into adulthood, i.e., up to one year of monitoring. Growth retardation was observed independent of the following genetic backgrounds: 129SV × C57BL/6 (>85% C57BL/6 contribution), 129SV × C57BL/6 × FVB/N (~50% FVB/N contribution) as well as 129SV × C57BL/6 × BALB/c (~50% BALB/c contribution). A slight increase in postnatal lethality of about 15% as well as between P1 and P22 was observed for the 129SV × C57BL/6 genetic background. Because no difference in bodyweight was detected for embryos at E12.5, E15.5 or E18.5, the failure to thrive was most likely caused by reduced feeding capabilities.
PWScrm+/p− mice were fertile, bred in the expected Mendelian ratio and did not become obese at any point in time
[42]. Expression of other genes in the PWS locus remained unaffected, except for a small decrease of the
Snord115 and
Ipw-G exon expression
[97].
In addition, magnetic resonance imaging revealed a decrease of grey-matter volume in the ventral hippocampus and septum areas of
PWScrm+/p− mice
[89]. Orexin and melanin concentrating hormone systems in the lateral hippocampus were impaired in mutant mice, as the deletion of
Snord116 gene cluster causes a 60% reduction in orexin expressing neurons
[88]. Consequently, expression of
pOx (prepro-orexin) and
Peg3 (paternally imprinted gene 3) were significantly upregulated in
PWScrm+/p− [88]. The analysis of RNA-seq data led to the identification of >4000 differentially regulated genes in the hypothalamus of
PWScrm+/p− mice compared to wild-type controls
[88]. Among the upregulated genes were those related to neurotransmitter transport, synaptic organization and cytokine production pathways
[88].
PWScrm+/p− mice also exhibited dysregulated “rapid eye movement” (REM) sleep, reduced peripheral thermoregulatory response, as well as an increase of peripheral body temperature compared to wild-type littermates during the light phase of the day. Those observations suggested that in addition to
Ndn, PWScr derived non-protein coding RNAs also contribute to the regulation of sleep physiological measures in PWS
[88].
11.2. The Second Mouse Model Harboring the Deletion of the PWS Critical Region (Snord116del)
The second mouse model featured an ~350 kb deletion of the
Snord116 gene cluster (UCSC, GRCm39/mm39 chr7:59,275,265-59,624,663—based on the location of genotyping primers). This eliminates an ~50 kb longer upstream region as opposed to the
PWScrm+/p− model (C,D; )
[43]. Gene targeting was performed by homologous recombination in BRUCE4 ES cells, thereby introducing
LoxP sites flanking the
Snord116 gene array. Selected ES cell clones were injected into C57Bl/6J-Tyr
c−2J/J albino blastocysts. Heterozygous offspring derived from the chimeras were mated with a transgenic C57BL/6J strain expressing Cre-recombinase. In a second experimental approach, targeted ES cells were transfected with a Cre expressing vector prior to blastocyst injection
[43].
Offspring from both lines exhibited a similar phenotype and transmitted the paternal deletion through the germline. Although the entire cluster consisting of
Ipw-A exons and
Snord116 genes was paternally deleted, the mouse model was named
Snord116del. The expression of other genes in the
PWS-locus remained unaffected by the deletion, except for the neighboring genes flanking the deletion. Thus, an approximate 35% decrease and a 33% increase in expression of
Snord107 and
Snord115 genes was observed, respectively
[43]. Notably, this is in contrast to a slight decrease of the
Snord115 gene expression in
PWScrm+/p− mice compared to WT littermates [
97]. Similarly, to the
PWScrm+/p− model, newborn
Snord116delm+/p− pups P0 harboring the paternally inherited deletion were indistinguishable from WT littermates. Growth retardation was detected from postnatal day 2 onwards.
In
Snord116del mice, which were homozygous for the deletion (
Snord116delm−/p−), reduced bone and fat mass relative to their bodyweight accompanied by an increase in lean mass was reported
[95].
Snord116del mice were fertile and bred normally, although the female sexual maturation was delayed. Interestingly, postnatal lethality was not reported for this
Snord116del model and mice were healthy during the 18-month observation. It was hypothesized that the failure to thrive was due to hypotonia and insufficient suckling, but neither hypotonia nor empty stomachs were observed in
Snord116del pups. However, the livers and stomachs of
Snord116del pups weighed less at P5 and P13 than those of their WT littermates, which might indicate a decreased rather than absent milk intake. An overall decreased stomach weight was also observed in the
PWScrm+/p− model, but the effect was not statistically significant when the reduced bodyweight of the animals was taken into account (Skryabin et al., unpublished)
[42]. Igf1 levels were significantly lower in mice lacking Snord116 expression, although there were no detectable anomalies of the pituitary gland itself
[43].
The onset of locomotive abilities was delayed in
Snord116del mice; yet, no differences in motor abilities were detected when reflex-related tasks were tested
[90]. Furthermore,
Snord116del mice exhibited an impairment in the recognition of novel objects and the memory of object location. In addition, the mice demonstrated a tendency towards increased anxiety-related behavior.
Food consumption was normal in the paternally deleted
Snord116del m+/p− mice, both on regular chow and high-fat diet. Indeed, the mutants were even somewhat resistant to obesity, as— compared to WT siblings—they displayed significantly lower bodyfat percentages after 4 months on a high-fat diet
[43]. Despite these findings, initial analysis of
Snord116delm+/p− mice revealed an increase in food intake relative to their lower bodyweight, which was interpreted as hyperphagia
[43]. Forthcoming studies revealed altered diurnal energy regulation in
Snord116del mice, thereby showing decreased respiratory exchange rates (a result of increased fat oxidation as opposed to carbohydrate) during the 12-h light period
[94]. Ghrelin levels in
Snord116del with
ad libitum access to food were significantly increased and comparable to the level observed in WT mice after a 24h fast, whereas insulin sensitivity was normal in mutant females but increased in males
[94]. In late adulthood (28–34 weeks of age), increased glucose tolerance and insulin sensitivity were detected independent of
Snord116delm−/p− gender
[95].
Snord116delm−/p− mice exhibited ~11% and ~31% higher calories per gram of bodyweight uptake in early (12–16 weeks of age) and late adulthood (28–34 weeks of age)
[95]. In early adulthood,
Snord116delm−/p− mice showed lower activity levels during the 12-h dark phase and increased energy expenditure during the light phase. However, in late adulthood, this profile was inverted, leading to increased activity during the dark phase
[95]. Core body temperature was also reduced in mutant mice in early adulthood.
Snord116delm−/p− mice were partially resistant to high fat diet-induced obesity, which subsequently, did not lead to a significant increase in bodyweight compared to normal chow, although the fat mass was increased
[95]. In stark contrast, recent analysis uncovered that paternally inherited
Snord116del mice displayed no significant differences (compared to the WT controls) in the 24-h food intake of animals that had
ad libitum access or those following a 24-h fast
[91]. However, when the Snord116 cluster was specifically eliminated in the mediobasal hypothalamus of adult mice, hyperphagia leading to obesity in a subset of animals was detected
[91].
However
, when the
Snord116del-based model harboring a mosaic partial deletion of the
Snord116 gene cluster was investigated in adult animals, the 16% reduction of Snord116 expression did not result in any significant effect on bodyweight. In addition, no remarkable change in weight of any major tissue/organ or even the lean mass was identified
[96]. Reduction of Snord116 expression resulted in an increase of small white adipose tissue mass; yet, food intake was reduced during
ad libitum food access or after a 48-h fast
[96]. The mosaic mice displayed an impaired glucose clearance rate and insulin resistance at 13 weeks of age
[96]. There was no detectable difference in energy expenditure or respiratory exchange rate, only a short time delay during the transition from the light, somnolent phase to the dark, active phase.
Changes in expression profiles of selected genes were investigated in
Snord116del mice by various research groups. The analysis of genes representing the leptin/melanocortin pathway revealed inconsistent results. Some approaches uncovered no altered expression profiles for
Npy (neuropeptide Y),
Lepr (leptin receptor),
Agr (agouti-related protein),
Pomc (Proopiomelanocortin),
Pcsk1 (prohormone convertase 1) or its transcription activator
Nhlh2(nescient helix-loop-helix 2) genes
[91]. However, early reports demonstrated reduced expression levels of
Pcsk1 and Nhlh2 genes and a shift in the ratio of active to inactive precursor forms of circulating hormones, e.g., proinsulin-insulin, preproghrelin-ghrelin, an effect which is presumably due to the impairment of the necessary processing pathway
[93]. The same group also reported a significant increase of
Npy and Agr expression in
Snord116del mice after refeeding. The
Snord116 deletion also leads to an impairment of pancreatic development, resulting in a reduction of pancreatic islet size and a decrease of
insulin 1(Ins1) and
insulin 2(Ins2) gene expression
[92]. In addition, expression of Pdx1,
Pax6 and
Nkx6-1 transcription factors, which are important for pancreatic development, was downregulated in adult
Snord116del mice. In the cerebellum of
Snord116del at postnatal day 30, the mean cell body diameter of Purkinje neurons was reduced by 21%. In the cortex of
Snord116del mice, the number of diurnal differentially methylated regions was dramatically reduced, with only 3% of regions showing the same rhythmic methylation pattern that is present in wild-type mice
[132]. Among those genes that were epigenetically dysregulated in
Snord116del mice, functional clusters regulating the circadian entrainment, AMPK (AMP-activated Protein Kinase) signaling, stem cell pluripotency, axon guidance, insulin resistance and dopaminergic synapse function were identified. Interestingly, in
Snord116del mice, altered diurnal methylation of the imprinted
Dlk1-Dio3 locus and upregulation of its maternally expressed genes were reported, suggesting putative “cross-talk” between two imprinted loci
[132].
Results obtained from the
Snord116 KO models are in accordance with the current leading hypothesis that the absence of
SNORD116 gene clusters indeed plays a causative role in the early onset of PWS pathogenesis.
SNORD116 genomic regions became a prime focus following the discovery of PWS patients harboring a rare minimal deletion of the
SNORD116 gene cluster (A)
[34][35][36][37][38][39].
Despite the fact that the IPW-A exons show little sequence conservation among mammals, we cannot completely rule out functional roles of exon-derived large non-protein coding RNAs in the PWScr region. Since SNORD116 genes from this cluster are the only genes from this region that exhibit a high degree of sequence similarities between different mammals, most research is aimed at elucidating their function. However, the PWScr region, as part of a long non-protein coding U-UBE3A-AS transcript, also encodes IPW-A- exons; yet, the functional significance of SNORD116 or non-protein coding IPW-A- exons, or the roles of both in the pathogenesis of PWS are yet to be elucidated.