Among the different therapeutics that can potentially be used to target the microbiome, probiotics is the most commonly studied in the literature. Probiotics exert anti-inflammatory properties in murine models of colitis and maintain the integrity of the gut barrier, rendering them as potential agents in the treatment of IBD [
177]. According to experimental studies, consumption of probiotics can be helpful in the management of depression by downregulating the HPA-axis that is highly activated in depressed patients and by increasing the production of GABA and serotonin, neurotransmitters with antidepressant properties [
178,
179,
180]. Although more evidence exists regarding the management of IBS (psychological interventions, diet, probiotics) [
181], a recent meta-analysis of 22 RCTs evaluated the role of probiotics in the management of IBD individuals [
182]. The results showed no additional benefit of probiotics as compared to placebo in inducing remission in patients with active ulcerative colitis and equivalent action to ASAs in preventing relapse of the disease [
182]. When the studies examining the probiotic VSL#3 were analyzed separately, there was a significant benefit for patients with active ulcerative colitis (RR: 0.74; 95% CI: 0.63‒0.87) [
182]. However, in patients with Crohn’s disease, probiotics did not exert a beneficial effect in preventing relapse of the disease, even after surgically inducible remission, or bringing the disease to a quiescent state [
182].
Flatulence, bloating, diarrhea, constipation and abdominal pain are common symptoms in patients with IBS, functional GI disorders and IBD that impair their QoL [
183]. Even patients with IBD in remission experience gastro-intestinal symptoms that fulfill the criteria for concurrent diagnosis of IBS [
183,
184]. New evidence suggests that a diet high in FODMAPs (Fermentable, Oligosaccharides, Disaccharides, Monosaccharides and Polyols) is responsible for generating abdominal symptoms in patients with IBS-like symptoms and IBD [
185,
186]. FODMAPs are poorly absorbed short-chain carbohydrates that stay in the gut lumen and are fermented by colonic bacteria in gas products that trigger the abdominal IBS-like symptoms [
187,
188]. Clinical evidence suggests that a low FODMAP diet exerts a beneficial effect in the symptoms of patients with IBS and currently is indicated in the management of the disease [
189,
190,
191]. In a RCT of 78 patients with IBD with IBS-like symptoms in remission or with mild-to-moderate disease, a low FODMAP diet for 6 weeks resulted in significant reduction of IBS symptoms and improvement of QoL as compared to patients that followed a normal diet [
192]. Following a subgroup analysis, the results showed greater benefit in symptoms improvement in patients with Crohn’s disease with a history of bowel surgery and in those with quiescent disease, while a trend toward reduction of disease activity was seen in patients with ulcerative colitis [
192]. An RCT of 88 patients investigating the efficacy of low FODMAP diet in IBD individuals with functional gastro-intestinal symptoms noted a significant control of symptoms in the majority of patients and a reduction in reported symptoms of any severity, such as abdominal pain, flatulence, bloating, incomplete evacuation or heartburn, as well as improvement in stool consistency in most patients [
193]. In a randomized, double-blinded, placebo-controlled, cross-over, re-challenge trial, 32 patients with IBD followed a low FODMAP diet with adequate relief of their symptoms [
194]. Patients were randomly assigned to 3-day FODMAP challenges with subsequent assessment of stool output and symptom severity [
194]. There was a significant increase in incidence and severity of IBS-related symptoms in the fructan challenge group as compared to the placebo group (glucose), findings that were not observable in sorbitol and galacto-oligosaccharides challenge groups [
194]. Two other studies have shown an improvement on symptoms of abdominal pain, bloating and diarrhea in IBD individuals, but not on constipation in which the response was inadequate [
195,
196]. Even though there are clinical studies, and especially RCTs showing a beneficial effect of low FODMAP diet in IBS-related symptoms in patients with IBD, larger studies should be conducted in order to introduce this novel strategy in patient management.
Given the role of fecal microbiota in the pathogenesis of IBD, another management strategy that has gained ground recently is fecal microbiota transplantation [
197]. Fecal microbiota transplantation has demonstrated high efficacy in the treatment of recurrent Clostridium difficile infection with inadequate response to standard treatment [
198]. In a meta-analysis of patients with active ulcerative colitis, a higher proportion of patients receiving fecal microbiota transplantation achieved combined clinical/endoscopic remission as compared to those receiving placebo with a good safety profile [
199]. However, the effect was short-term and further studies are needed to prove the efficacy of fecal microbiota transplantation as a maintenance treatment and establish the safety of the procedure in order to be introduced in the treatment of patients with IBD [
199].