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Bacterial Transcription Machinery: History
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Contributor: Yu Peng

The bacterial transcription machinery comprises the molecular components that synthesize RNA from a DNA template and regulate progression through the transcription cycle [1]. Its catalytic core is the multisubunit RNA polymerase, a five-subunit enzyme that binds template DNA and catalyzes ribonucleotide polymerization [1][2]. Promoter-specific initiation requires association of the RNA polymerase core with a sigma factor, forming the holoenzyme that recognizes promoter sequences and positions the enzyme for DNA opening and transcription start-site selection [1][3]. Regulatory proteins modulate which promoters the polymerase recognizes and how efficiently initiation proceeds through contacts with DNA, RNA polymerase, or both [4]. Activators can stabilize particular transcription-complex arrangements and assist transitions toward RNA synthesis [3]. During termination, signals encoded in the DNA template and nascent RNA mediate intrinsic termination, whereas the ATP-dependent RNA translocase Rho binds nascent RNA and dissociates the elongation complex in Rho-dependent termination [4]. These components and interactions collectively organize DNA opening, template positioning, nucleotide incorporation, and the transitions linking initiation, elongation, and termination [5].

  • RNA polymerase
  • sigma factors
  • promoter recognition
  • transcription initiation

RNA and protein synthesis mechanisms·Molecular Biology·Biochemistry, Genetics and Molecular Biology·Life Sciences

References

  1. Katsuhiko S Murakami; Seth A Darst; Bacterial RNA Polymerases: the Wholo Story. Curr. Opin. Struct. Biol. 2003, 13, 31-39, 10.1016/s0959-440x(02)00005-2.
  2. Douglas F. Browning; Stephen J. W. Busby; The Regulation of Bacterial Transcription Initiation. Nat. Rev. Microbiol. 2004, 2, 57-65, 10.1038/nrmicro787.
  3. Dmytro Kompaniiets; Dong Wang; Yang Yang; Yangbo Hu; Bin Liu; Structure and Molecular Mechanism of Bacterial Transcription Activation. Trends Microbiol. 2023, 32, 379-397, 10.1016/j.tim.2023.10.001.
  4. Ananya Ray-Soni; Michael J. Bellecourt; Robert Landick; Mechanisms of Bacterial Transcription Termination: All Good Things Must End. Annu. Rev. Biochem. 2016, 85, 319-347, 10.1146/annurev-biochem-060815-014844.
  5. Georgi Muskhelishvili; Patrick Sobetzko; Sanja Mehandziska; Andrew Travers; Composition of Transcription Machinery and Its Crosstalk with Nucleoid-Associated Proteins and Global Transcription Factors. Biomolecules 2021, 11, 924, 10.3390/biom11070924.
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