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Transcriptional Regulation: History
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Contributor: Yu Peng

Transcriptional regulation is the set of molecular processes that determines the timing, cellular location, and rate at which defined genomic loci are transcribed into RNA. It operates through interactions among cis-regulatory DNA elements, including promoters, enhancers, silencers, and insulators; sequence-specific transcription factors; RNA polymerase and its general transcription machinery; cofactors; and the local chromatin environment [1][2]. Regulatory inputs influence the recruitment, assembly, activation, pausing, productive elongation, and termination behavior of RNA polymerase at individual transcription units. DNA accessibility, nucleosome positioning, histone modifications, DNA methylation, three-dimensional chromatin contacts, and regulatory non-coding RNAs contribute to the molecular state through which these inputs are integrated [2][3]. Within a gene regulatory network, transcriptional regulation comprises directed regulatory relationships in which transcriptional regulators modulate the transcriptional output of target genes, forming interconnected circuits that specify gene-expression programs [3].

  • transcription factors
  • cis-regulatory elements
  • chromatin accessibility
  • gene regulatory networks

🔵 Gene Regulatory Network Analysis • 🟣 Molecular Biology • 🟡 Biochemistry, Genetics and Molecular Biology • 🔴 Life Sciences

References

  1. François Jacob; Jacques Monod; Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 1961, 3, 318-356, 10.1016/s0022-2836(61)80072-7.
  2. Tong Ihn Lee; Richard A. Young; Transcriptional Regulation and Its Misregulation in Disease. Cell 2013, 152, 1237-1251, 10.1016/j.cell.2013.02.014.
  3. Eileen E. M. Furlong; Michael Levine; Developmental Enhancers and Chromosome Topology. Science 2018, 361, 1341-1345, 10.1126/science.aau0320.
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