Lassa virus (LASV) is the causative agent of Lassa fever (LF). The virus was first isolated from two missionary nurses who died from LF in Nigeria in 1969
[1,2,3][1][2][3]. A third nurse was infected and brought to the United States; her plasma was used to treat a fourth patient who was exposed by handling infected blood samples
[1]. LASV is a mammarenavirus from the
Arenaviridae family and has a single-stranded, negative-sense, bisegmented RNA genome. LASV is endemic throughout Western Africa, especially in Nigeria, Liberia, Guinea, and Sierra Leone, where it is transmitted by the Natal mastomys (
Mastomys natalensis) rodent, although recent work suggests viral presence in the reddish-white mastomys (
Mastomys erythroleucus) and the “African wood mouse” (
Hylomyscus pamfi) rodents as well
[2,4][2][4]. LASV isolates of different geographic and host origins are highly diverse in genomic sequences and phylogenetically classified into up to seven lineages, with each lineage predominately localized in specific countries (refer to
Table 1 for the LASV isolates covered here)
[5,6,7,8,9][5][6][7][8][9]. A recent deep sequencing analysis revealed that the sequence variations could be as high as 25% and 32% in the viral genomic small (S) and large (L) segments, respectively, among different strains
[5]. LASV causes zoonotic infections in humans, typically through the ingestion of contaminated food and/or water or inhalation of tainted aerosols from infected rodents; person-to-person transmission occurs via contact with bodily fluids
[2]. Estimates from the Centers for Disease Control and Prevention (CDC) place the number of new LASV infections each year as high as 300,000 with around 5000 deaths from LF
[2,10][2][10]. The average case fatality rate is approximately 1%, which can dramatically elevate to 15–20% for hospitalized cases
[2]. However, a more recent report indicated only 633 confirmed cases and 171 deaths in Nigeria in 2018, with a 27% case fatality rate
[11]. In the recent 2018–2019 Nigerian LF outbreaks, approximately 25% of patients died from the infection
[12,13,14][12][13][14]. Therefore, it is necessary to re-evaluate the annual incidence of LASV infections and deaths.
There are no FDA-approved vaccines against LASV. Current clinical treatments are limited to an off-label use of ribavirin
[2,14][2][14]. However, ribavirin treatment is expensive and only effective if administered within the first six days after the onset of symptoms
[15]. When considering the high rate of misdiagnosis of LF for other endemic infections, such as typhoid or falciparum malaria
[1[1][2][16][17],
2,16,17], this time frame for effective LF treatment is extremely challenging
[16]. Moreover, ribavirin has a high rate of side effects, such as hemolysis, that often require further medical intervention
[15].