Gene mutations have been observed to be one of the many factors implicated in apoptosis evasion by cancer cells. This involves the generation of abnormal transcription products, leading to a loss or gain of function for several proteins, dysregulation of cellular homeostasis, and resistance to apoptosis. Examples of gain function mutations are represented by the catalytic subunit of PI3K (PI3KCA) mutations (E542K, E545K and H1047K) that cause sustained PI3K pathway activation. Instead, loss function mutations can occur at the expense of BAX, p53, and Phosphatase Tensin Homolog (PTEN) genes
[123,124,125,126][74][75][76][77].
The modulation of extrinsic and intrinsic apoptotic signals effects can be reconducted to a family of structurally distinct inhibitor of apoptosis proteins (IAPs): cellular (cIAP1, cIAP2), surviving, X-linked (XIAP), neuronal (NIAP), livin, BIR-ubiquitin conjugating enzyme (BRUCE), and testis specific (Ts-IAP). IAPs expression is specifically upregulated during diseases progression and DR onset, hence the interest towards IAPs as potential targets for resistant cancer treatment
[127,128][78][79]. For instance, X-linked IAP (XIAP) is upregulated in LC cells and enhances apoptosis inhibition.
Several approaches have been explored to date on the use of pro-apoptotic NPs as potential chemoresistance therapy in human LC. For instance, a novel pro-apoptotic drug–drug conjugate was obtained by Shim and co-workers through the conjugation of the pro-apoptotic peptide drug (SMAC; Ala-Val-Pro-Ile-Ala-Gln, AVPIAQ) and cathepsin B-cleavable peptide (Phe-Arg-Arg-Gly, FRRG) to DOX, resulting in SMAC-FRRG-DOX that self-assembled into NPs. Upon cellular uptake, the NPs were cleaved to obtain pro-apoptotic SMAC and cytotoxic DOX specifically in cancer cells that overexpress cathepsin B, inducing a synergic effect of the combined molecules in a metastatic LC model
[133][80].
2.6. Alteration of Drug Targets
Resistance to chemotherapeutic agents can be due to alteration in their targets at the tumor sites. These changes occur due to molecular modifications that may begin by mutation in DNA and alterations in protein expression, resulting in a decrease in the affinity of the drugs with their binding targets and DR (
Figure 4). For example, treatment of SCLC with DOX in combination with platinum drugs inhibits the topoisomerase enzymes in the cells by intercalation between the DNA bases, causing inhibition to the enzyme gyrase that is responsible unwinding the structure of DNA during the DNA replication and ultimately causing DNA breakage. Many of resistant cancer cells can survive this treatment by modifying topoisomerase II gene expression and hence altering the target of DOX
[78,139][60][81].
A similar DR mechanism was also reported for anticancer drugs that target specific signaling kinases, such as the epidermal growth factor receptor (EGFR) family
[26,140,141][22][82][83]. In this case, a mutation commonly occurs in the receptor kinase, leading to over-activation of these kinases and their downstream signaling molecules such as Ras, Src, and MEK. Many of these kinases become constitutively active and promote uncontrollable cell growth. In some cancers, if the drug targets molecules of the signaling pathways, the resistant cancer cells tend to activate alternative molecules. The mutations in the EGFR in anaplastic lymphoma kinase (ALK) fusion gene-positive LC after the patient was treated with crizotinib serve as an example. Acquired resistance to the drug occurred via (ALK)-mutations, such as EGFR (L1196M and C1156Y), and some patients had other mechanisms of resistance with both mutations and increase in ALK gene copy number
[142,143,144][84][85][86]. The single-nucleotide mutations, such as L1196 and G1269A, were reported in some cases to cause crizotinib resistance in NSCLC
[145][87]. However, sometimes, the same effect of the mutation that causes over-activation can be found via gene overexpression. Overexpression of certain receptors in some LCs with a mutation in the EGFR tyrosine kinase domain causes drug-acquired resistance that may occur after the long-term use of drugs inhibitors targeting this kinase
[145][87]. EGFR-targeted liposomal nanoparticles (EGFR-LP) were developed for the treatment of NSCLC resistance to drugs as erlotinib and afatinib, determined by mutations in the tyrosine kinase (TK) domain of EGFR
[146][88]. Ramanathan and colleagues have re-ported a novel DNA-based colorimetric assay for the detection of early EGFR mutation using unmodified gold nanoparticles (GNPs)
[147][89].
2.7. Enhancing DNA Repair
DNA repair involves a tangled network of repair mechanisms dictated by the specific kind of stimuli and damage to which cells are exposed (
Figure 4). These mechanisms include mismatch repair (MMR), nucleotide excision repair (NER), base excision repair (BER), direct reversal (MGMT, ABH2, ABH3), homologous recombination (HR) and nonhomologous end joining (NHEJ) pathways. For instance, ionizing radiation induces double-strand breaks (DSBs) mainly repaired by nonhomologous end joining (NHEJ) pathways. On the other hand, mono- and bifunctional alkylators can induce DNA-base modifications interfering with DNA synthesis, which can be reversed in a mismatched repair-dependent manner
[44,164,165][37][90][91].
Inhibition of DNA repair systems may be a potential strategy to sensitize cancer cells to chemotherapeutic drugs and increase their efficacy. However, even if disrupting DNA repair systems may block the resistance to chemotherapeutic agents, it can also be responsible for the development of new mutations due to genomic instability
[166][92].
CIS-resistant cancer cells showed higher levels of DNA damage repair. In addition, it was noted that inhibition of NER pathways can significantly enhance tumor cells’ sensitivity to CIS. The enhanced DNA repair capability in lung-CSCs was associated with an extensive activation of DNA repair genes in response to CIS treatment, suggesting it may be the main mechanism involved in resistance insurgence
[167,168][93][94]. Studies have also highlighted an inverse correlation of ERCC1 (NER pathways) with response to platinum therapy in LC
[169][95]. Apurinic/apyrimidinic endonuclease 1 (APE1) is considered a crucial BER pathway protein due to its activity as intermediate in the processing of potentially cytotoxic DNA damage sites. Moreover, APE1 seems to have a dual role, depending on its cellular localization, where it carries out DNA repair in the nucleus. However, in the cytoplasm, its primary role is assumed to be the regulation of mitochondrial DNA repair, possibly together with the regulation of various transcription factors. In LC cells, APE1 is often overexpressed, especially in CIS-resistant cancers
[170,171][96][97].
2.8. Gene Amplification
DR due to gene amplification is estimated to occur in 10% of the cancers. It involves an increase in the number of copies of certain oncogenes inside the resistant cancer cells to several hundred times more than the drug-sensitive cancer cells. This eventually lead to the production of related oncoproteins in large amounts per cell (
Figure 4). For instance, the MET gene amplification is found to affect 5–20% of EGFR-TKI-treated NSCLC patients who develop resistance to TKI drugs. HER2 amplification also has been recognized as a rare resistant mechanism in lung adenocarcinoma occurring in 1–2% of total cases in patients and tends to be up to 13% in NSCLC patients with resistance to EGFR-TKIs
[176,177,178,179][98][99][100][101]. The MET is a proto-oncogene that encodes itself into MET proteins (c-MET), which can result in an increase in tyrosine kinase signaling and excessive cellular division
[180][102]. There is a link between the MET and the third-generation EGFR-TKIs resistance in the EGFR mutant (EGFRm) NSCLC cell line (HCC827/ER). Acquired resistance to erlotinib due to the amplified MET gene in the cells and associated with hyperactivated MET protein also leads to resistance to both osimertinib and rociletinib
[181][103]. The use of a small-molecule MET inhibitor or genetic knockdown to the expression of MET successfully increased the sensitivity of HCC827/ER cells to osimertinib and effectively inhibited the cell growth in vitro and in vivo
[181,182][103][104].
The amplification of genes was also detected in the MDR1/ABCB1 chromosomal region that encodes the P-gp (P-gp/ABCB1) with overexpression of the ATP-binding cassette pumps in resistant LC cells after being treated with PTX. This resulted in a decrease in cellular accumulation of PTX, an increase in its efflux out of the cancer cells, and the development of resistance to the drug
[47,183,184,185][40][105][106][107]. The encapsulation of chemotherapeutic agents into NPs or their conjugation to polymeric carriers allow them to evade the ABC drug efflux pumps as they become unrecognizable as substrates to be exported. In one study, anti-MRP-1 and anti-Bcl2 siRNA were encapsulated in combination with DOX in liposomes. The DDS targeted both pump and non-pump mediated cellular LC resistance, leading to suppression of efflux pumps and an increase in drug accumulation inside resistant LC cells
[186][108].
2.9. Epigenetic Alteration Caused Drug Resistance
Although all cells of the human body have the same exact genes, epigenetic alterations regulate the way genome can be read. These are changes in the chemical structure of DNA that do not change the nucleotide coding sequence but have a profound effect on gene expression. Epigenetic alterations may occur due to the adding of and exposure to environmental factors, such as diet, exercise, drugs, and chemicals
[187,188,189][109][110][111]. Methylation and acetylation of DNA are two well-studied epigenetic events that significantly alter the expression of genes, resulting in the upregulation of oncogenes and/or downregulation of tumor suppressor genes and development of cancer DR
[190][112].
In eukaryotes, histones mainly serve as a structure guide for several enzymes to provide the necessary platform for RNA polymerase access to its target. Histone acetyltransferases (HATs) and histone deacetylases (HDACs) are essential enzymes that regulate histone acetylation, which is the pivotal focus of several studies on post-translational modification mechanisms. Most of the common features displayed by cancerous cells, such as the evasion of apoptosis, increased angiogenesis, and metastasis progression can be linked to epigenetic modulation and to HDAC. A number of studies highlighted the multiple roles of HDAC, suggesting it as a potential target for chemotherapy and establishing the basis for the development and use of HDAC inhibitors (HDACi) as co-adjuvant for many anticancer agents for treatment of NSCLC
[191,192][113][114]. PTX co-administration with HDACi SNOH-3 showed reversed DR in PTX-resistant NSCLC cells characterized by overexpression of HDAC1
[193][115]. Sharma et al. demonstrated the ability of a subset of stem-like cells in NSCLC cell lines to undergo chromatin remodeling following treatment with erlotinib and CIS, which allow the development of drug insensitivity
[194][116]. However, despite the myriad of pre-clinical work supporting HDACi efficacy as adjuvant of chemotherapy in treatment of NSCLC, they have demonstrated modest efficacy as single agents in clinical trials.
The use of nanocarriers for the delivery of epigenetic agents has noticeably enhanced their ability as co-adjuvants to re-sensitize cancer cells after the onset of anticancer DR. Studies on using HDACi-loaded NPs in combination with chemotherapy and radiotherapy demonstrated the enhancement of anti-proliferative effects
[195][117]. For example, to improve the bioavailability of the histone deacetylase inhibitor vorinostat (VOR) and its efficacy in the treatment of multidrug resistant cancers, solid lipid NPs (SLNs) were used as carriers. Treatment of resistant LC cell line with VOR-SLNs resulted in improved efficacy, elevated payload capacity, and a sustained release profile. The results also showed that lower doses of VOR-SLNs were required to obtain the same cytotoxic effect as free-VOR
[196][118].
2.10. Clinical Studies Using Nanotechnology for Management of DR in LC
In 2012, the FDA approved the first nano-formulation for treatment of NSCLC patients, Abraxane, which consists of solvent-free albumin-bound PTX-NPs based on its significant improved clinical trial outcomes [212][119]. Other nano-formulations have been the subject of various clinical trials and showed promising therapeutic outcomes in the treatment of resistant LC (http://www.clinicaltrials.gov).