Liposome-Based Carriers for CRISPR Genome Editing: Comparison
Please note this is a comparison between Version 2 by Camila Xu and Version 1 by Xing Yin.

CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a revolutionary genome editing technology that allows the precise modification of DNA sequences. Liposomes, which are small vesicles composed of lipid bilayers, have emerged as promising carriers for delivering various therapeutic agents, including CRISPR components.

  • liposome
  • CRISPR/Cas9
  • single-guide RNA
  • gRNA

1. Introduction

CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a revolutionary genome editing technology that allows the precise modification of DNA sequences. It has been widely used by scientists and offers great potential for gene therapy for various diseases. CRISPR/Cas9 is one of the most promising major advances in the field of gene therapy [1,2,3][1][2][3]. The CRISPR–Cas9 system consists of a guide RNA (gRNA) and the Cas9 nuclease [4,5,6,7,8][4][5][6][7][8]. The Cas9 protein is the enzyme that acts as the molecular scissors in the CRISPR–Cas9 system, responsible for cutting the DNA strands. The guide RNA (gRNA) is a small RNA molecule. It binds to the Cas9 protein and guides it to the desired location in the genome. Once the Cas9 protein reaches the target gene, it creates a precise cut or break in both strands of the DNA helix. This break triggers the cell’s DNA repair machinery. The DNA repair mechanisms that come into play after the double-strand break can result in different outcomes [9,10,11][9][10][11].
Efficient and targeted delivery of CRISPR components is crucial for successful genome editing. To achieve the desired genetic modifications, Cas9 and guide RNA molecules must be delivered to the specific cells or tissues of interest. However, delivering large biomolecules like CRISPR components into cells is challenging due to their sizes and the natural barriers of the cell membrane. Methods for delivering CRISPR components into cells can be broadly categorized into three types: physical transfection, viral transfection, and non-viral chemical transfection. Physical transfection involves creating temporary pores in the cell membrane, allowing gRNA/Cas9 to enter the cell. Three common physical methods used for introducing CRISPR components into cells are electroporation, nucleofection, and microinjection. Viral transfection utilizes viral vectors to transfer DNA or RNA into cells through a process called transduction. Several types of viruses can be used for transduction, including lentiviruses, adenoviruses, adeno-associated viruses, and herpes viruses. These viruses are engineered to carry the desired CRISPR components and efficiently deliver them into the target cells. Chemical transfection utilizes various chemical compounds to transport molecules into cells, including calcium phosphates, cationic polymers, and cationic amino acids. One of the commonly employed chemical transfection methods for introducing CRISPR components into cells is lipofection using liposomes [12,13,14][12][13][14].
Liposomes, which are small vesicles composed of lipid bilayers, have emerged as promising carriers for delivering various therapeutic agents, including CRISPR components. Their unique structure and properties make liposomes ideal for encapsulating and protecting biomolecules while also facilitating their delivery into target cells.

2. Liposome-Based Delivery System

Liposomes, stable spherical vesicles made of cholesterol and nontoxic phospholipids, have attracted attention and found diverse applications due to their amphiphilic nature, biocompatibility, biodegradability, and facile surface modification. They represent versatile carriers for drug and gene delivery, offering numerous advantages including encapsulation, targeted delivery, protection from degradation and metabolism, controlled release, and biocompatibility. Their ability to overcome biological barriers and enhance drug efficacy makes them an attractive option for the development of novel pharmaceutical formulations [15,16,17,18,19,20][15][16][17][18][19][20]. In the field of gene therapy, liposomes have played a significant role because they can encapsulate and deliver genetic material, such as DNA or RNA, to target cells [21,22,23][21][22][23]. Over the past 50 years, liposome-based gene delivery has achieved significant milestones (Figure 1). Originally discovered in the 1960s [24], the concept of using liposomes as carriers for gene delivery originated in the 1980s [25,26,27][25][26][27]. Despite early challenges of low transfection efficiency, liposome formulations have been developed to deliver siRNA, plasmid DNA, and mRNA for gene silencing, replacement, and protein expression [25,26,27,28,29,30,31,32,33,34][25][26][27][28][29][30][31][32][33][34]. Surface modifications of liposomes with ligands, such as antibodies or peptides, have been a focus of research, enabling selective binding to specific receptors on target cells and improving delivery efficiency [12,13,35,36,37,38][12][13][35][36][37][38]. Additionally, stimuli-responsive liposomes were engineered to release their cargo in response to environmental cues, such as pH changes or ultrasound activity [37,39,40,41][37][39][40][41]. Clinical trials have extensively evaluated liposome-based gene delivery systems, demonstrating positive results for the treatment of diseases [15,16,42][15][16][42]. In recent years, lipid-based nanotechnology has demonstrated significant advancements, offering innovative approaches for gene delivery and therapeutics [43,44,45,46,47][43][44][45][46][47]. Surface modifications, stimuli-responsive liposomes, and clinical trials have further advanced this field. Escaping endosomes remains a challenge, but optimized gene loading, stability, and controlled release may hold promise for increased genome editing efficiency [35,36,40,41,42,43,44,45,46,47][35][36][40][41][42][43][44][45][46][47].
Figure 1.
Schematic illustration of the development of liposome-based gene delivery.
The preparation process involves formulating liposomes with cationic lipids and genetic material, forming complexes for administration to target cells. PEGylation (Polyethylene Glycosylation) is a technique employed to modify the desired material by attaching polyethylene glycol (PEG) chains to them. PEG can improve the pharmacokinetic properties of therapeutic agents through increased half-lives, reduced immunogenicity, enhanced solubility and stability, and improved tissue penetration [48,49][48][49]. Once at the target site, liposomes interact with cell membranes and release genetic material for therapeutic genome editing. Liposomes present advantages for CRISPR delivery, ensuring stability, enhanced cellular uptake, and targeting through surface modifications.

3. Liposome-Based CRISPR Delivery

Liposomes have been extensively engineered to optimize the delivery of CRISPR/Cas and gRNA [12,13,35,36,37,40,50,51,52][12][13][35][36][37][40][50][51][52]. The combination of the CRISPR-based system with liposome delivery technology enables precise and efficient genetic modifications in cells and tissues. In the context of the CRISPR combination approach, liposomes are modified to carry CRISPR components, such as Cas9 and gRNA. CRISPR has been extensively utilized for making accurate and precise modifications to the genetic code [4,5,6,7,8][4][5][6][7][8]. It utilizes gRNA to target a specific DNA sequence, which is then recognized and cleaved by an enzyme called Cas9. Subsequently, the cell’s own DNA repair mechanisms can be harnessed to introduce desired genetic modifications. CRISPR has shown remarkable potential in gene therapy, exhibiting promising results in treating conditions like sickle cell anemia and cystic fibrosis [1,2,3][1][2][3]. However, the effectiveness of the CRISPR/Cas system has been limited by the lack of efficient delivery methods. An essential prerequisite for successful gene editing is the development of a delivery strategy that can effectively deliver the CRISPR cargo to the target for effect. Liposomes, made of lipids like cell membranes, can encapsulate diverse agents (e.g., hydrophobic/hydrophilic molecules, proteins, peptides, and nucleic acids) [42,53,54,55,56][42][53][54][55][56]. By modifying their surface with ligands or antibodies that recognize specific receptors or markers on the target cells, liposomes can be targeted to specific cells or tissues thereby enhancing the specificity and efficacy of the therapy while minimizing off-target effects. Furthermore, liposomes can be designed to respond to specific environmental cues, such as pH, temperature, or other stimuli, to trigger payload release at the desired location [42,55,56][42][55][56]. Overall, liposomes have shown great promise as CRISPR delivery.

3.1. Enhanced Targeting and Cellular Uptake In Vitro and In Vivo

Liposome-based vectors provide a versatile and efficient means of delivering CRISPR components into cells for genome editing in vitro [13,36,37,57][13][36][37][57]. The liposomes can fuse with the cell membrane or be internalized via endocytosis, facilitating the release of the encapsulated CRISPR components into the cell’s cytoplasm. Before entering the nucleus to induce gene editing, the Cas9 enzyme and gRNA form a complex. The gRNA guides the Cas9 enzyme to the specific target site in the genome by binding it to the complementary DNA sequence. The use of liposomes as delivery vehicles presents their biocompatibility, protection from degradation, and enhanced cellular uptake [58,59][58][59]. Liposome-based vectors have exhibited the ability for in vivo CRISPR-based genome editing, delivering CRISPR components into living organisms for precise modifications in specific cells or tissues [40,51][40][51]. The liposomes are typically safe for use in living organisms and can be modified to optimize their stability and targeting capabilities. Also, they can be engineered to incorporate ligands or surface modifications that allow specific recognition and uptake by target cells, enhancing the delivery efficiency. The effectiveness of liposome-based vectors for in vivo CRISPR-based genome editing depends on several factors, including the choice of lipids, the efficiency of encapsulation, the stability of the liposomes in the physiological environment, and the specificity and efficacy of targeting the desired cells or tissues. CRISPR/Cas9 components can be effectively delivered to cells and/or tissues using liposome-based vectors and delivery methods (Figure 2).
Figure 2. Schematic illustration of the liposome for CRISPR-based components delivery. (A) Liposome preparation. Liposome preparation includes various designs without/with surface ligands for specific binding. (B) Delivery of CRISPR/Cas9 components in plasmid, mRNA, or ribonucleoprotein (RNP) forms. (C) Liposome-based carriers to create a dependable and versatile delivery system for CRISPR/Cas9. (D) The liposome-based vector delivers CRISPR components to target cells or tissues, with/without controlled release based on specific stimuli sensitivity. The formed Cas9/gRNA RNP then enters the nucleus and interacts with target DNA, initiating genome editing through PAM and gRNA recognition of specific chromosomal DNA sequences. This enables precise genetic manipulation techniques like CRISPR with Double-Stranded Break (DSB), Base Editing, or Prime Editing.
Liposomes in CRISPR combination therapy carry additional agents like CRISPR-Cas9 components, chemotherapeutic drugs, siRNA, immunomodulatory, and gene regulatory components [13,36,37,40,51,57][13][36][37][40][51][57]. They possess the capability of being tailored with specific ligands, allowing for the targeted delivery of CRISPR components and other therapeutic agents to particular cells or tissues. This targeted approach enhances the overall effectiveness of treatment while minimizing the risk of off-target effects. The liposome-based CRISPR combination approach shows promise in treating diseases by combining CRISPR precision with synergistic effects. Table 1 below summarizes the various liposome modifications and lipid compositions that have been used to specifically target and modulate gene expression both in vitro and in vivo.
Table 1.
Summary of Various Studies in vitro and in vivo Using Different Liposome Modifications and Lipid Compositions.

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