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Abiotic Stresses Response of Crop
In nature, plants are exposed to an ever-changing environment with increasing frequencies of multiple abiotic stresses. These abiotic stresses act either in combination or sequentially, thereby driving vegetation dynamics and limiting plant growth and productivity worldwide. Most abiotic stresses, occurring either in combination or sequentially, adversely influence the earth crust by modifying the physico-biochemical properties of water, soil, atmosphere, and consequently, plants face hostile conditions. Combined or sequential occurrences of abiotic stresses can damage the crops more significantly than their individual occurrences during various developmental stages. In response to these abiotic stresses, plants develop innumerable physiological, biochemical, cellular and molecular mechanisms to sense and respond against different abiotic stresses.
Until now, most of the the plant-environment interaction studies have been focused on crop responses against individual stress, which usually could not be replicated in a similar manner under actual field conditions where a complex interplay of multiple stresses occur, either in combination or sequentially .
Field conditions are often difficult to mimic experimentally as the outcome of combined or sequential stress significantly depends upon numerous factors, including the developmental stage, stress duration, severity, and sequence of individual stresses . Recent evidence has shownthat combined or sequential stress may affect plant metabolism differently from individual stresses, and hence, shows several unique and common responses . Table 1 presents representative examples where processes associated with changes in transcriptome, proteome, metabolome and morpho-physiology of the plants in response to combined high temperature and drought (HT+D) has been studied.Moreover, various stress regulatory genes and their signaling pathways have already been classified, depending upon the interaction between individual stresses . However, little information is available onthe interaction between multiple stresses in plants .
Table 1. Representative examples showing the physiological and molecular processes studied in plants in response to combined high temperature and drought stress (HT+D).
|3||Morpho-physiological traits||Agricultural crops|||
|4||Morpho-physiological traits||Agricultural crops|||
|5||Reactive Oxygen Species (ROS)||Agricultural crops|||
|6||Physiological and Proteome changes||Maize|||
|7||Proteome changes||Agricultural crops|||
|9||Anti-oxidative enzymes, ABA response and Proteome changes||Maize|||
|10||Physiological and gene expression response||Camellia oleifera|||
|14||Grain growth and starch accumulation||Barley|||
|16||Antioxidant metabolism and lipid
|17||Physiological recovery||Kentucky bluegrass|||
Plants are sessile organisms and have developed a remarkable capability to inhabit ecological niches that are regulated by their edaphic, as well as infrequent, heterogenous and chronic climatic extremes that have cyclic patterns . Therefore, understanding the mechanisms underlying combined or sequential stress responses is crucial for discovering novel strategies and tools for the development of plant-resilient to suboptimal field conditions to ensure global food security and livelihood of billions of people . Tremendous variations exist both within, and across, plant species in their ability to cope with these stresses. Technological advancements and modern genomic strategies developed over the last few decades have substantially improved our understanding of plant stress adaptation and acclimation. This has enhanced our basic understanding ofthe environmental and genetic interactions that play key roles in plant adaptation and yield stability .
2. Impact of Individual, Combined and Sequential Stresses on Plants
Despite a considerable increase in the number of abiotic stress related studies conducted during the past decade, most experiments have been focused on the response of plants to individual stress treatment under controlled conditions . In contrast, under field conditions, numerous stresses can occur in combination or simultaneously, and may specifically alter plant metabolism than by individual stress treatments . Due to higher frequency of the concurrent occurrence of multiple stresses under field conditions, the plant response may vary from that tested under laboratory conditions . Therefore, to understand a holistic survival mechanism of plants, it is essential to study the combined and sequential abiotic stresses under the natural environment, which is still far less investigated . Our knowledge of the molecular basis of the additive responses towards combined and sequential abiotic stresses is considerably less .
Plants, being sessile organisms, have evolved various physiological and biochemical mechanisms to adapt to extreme environmental conditions during their life cycle . The level of plasticity against different stresses is regulated by the plant ’s genetic background, along with the duration and severity of stress . Abiotic stress signaling in plants is complex in nature  and involves different interacting signal transduction pathways especially during multiple stress tolerance, termed as ‘crosstalk’ . Due to this crosstalk, the outcome of combined or sequential stress can either be neutral, additive, antagonistic, synergistic or sometimes unpredictable in nature (Table 2, Figure 1) . For example, plants increase their transpiration rate by stomatal opening during heat stress, while under combined heat and drought stress, they close their stomata to reduce water loss . Therefore, it is necessary to identify the molecular mechanisms behind the perception and adaptation under combined or sequential stresses .
Figure 1. The stress matrix. Different combinations of potential environmental stresses that can affect crops in the field are shown in the form of a matrix. The color of the matrix indicates stress combinations that were studied with a range of crops and their overall effect on plant growth and yield. References for the combined studies are given in the Table 2.
Most of the environmental stresses have similar effects and responses, such as reduction in photosynthesis and growth, hormonal changes, oxidative damage, and the accumulation of stress-related proteins . Besides stomatal closure, root water uptake capacity also plays a significant role in avoiding stress-induced growth reduction during dehydration . Usually, heat stress occurs simultaneously with drought stress under field conditions, which makes studying their combined response indispensable, primarily in drought-stricken and semi-arid regions . Numerous studies have examined the effect of combined heat and drought stress on the development and productivity of maize, barley, sorghum, and different grasses. The co-occurrence of drought and heat stresses would be anticipated largely to alter the physiological and morphological status, and metabolism, especially photosynthesis .
Due to intensive irrigation, secondary salinization increases in semi-arid and arid agricultural regions, representing an excellent example of combined drought and salt stress . Despite various stress-independent commonalities during osmotic stress, several stress-specific signatures have also been reported in different tissues at the level of transcriptome, metabolome and proteome during individual and combined salinity and drought stresses . Under both drought and salinity stress, reduced photosynthesis, improved respiration rate, stomatal closure due to ABA signaling to reduce transpirational water loss and starch breakdown for energy production were observed .
In contrast to flooding, which restricts root growth, drought stress causes extensive or deeper root systems . However, the duration and magnitude of both drought and flooding might be critical in determining species composition as drought may be lethal due to run-away xylem embolism . Similarly, elevating sea levels and intrusion of seawater causes inland salinization, and along with heavy winds and high temperature, results in salt injury during different phases of the growing season . Further, during post-submergence, the limitations on water absorption cause drought-like symptoms, such as leaf wilting, rolling, and decreased relative water content . Irrespective of the common symptoms of low temperature and salinity on plant growth and development , limited information is available about their combined effect on plants .
Table 2. Representative examples showing the specific interactions among various stress combinations on diverse plants.
|Stress Combinations||Crop Plants||Outcomes during Combined Stress||References|
|Negative response||Drought + salinity||Wheat||
|Drought + high temperature||Tobacco||
|Drought + chilling||Sugarcane||
|Drought + pathogen||Arabidopsis||
|Drought + UV||Plants||
|Drought + high light||Arabidopsis||
|Drought + low N||Wheat||
|Drought + heavy metals||Red maple||
|Drought + soil compaction + mechanical stress||Tobacco||
|Drought + nutrient||Mungbean||
|Salinity +high/low temperature
Drought + high/low temperature
|Salinity + high temperature||Suaeda salsa||
|Salinity + pathogen||Rice||
|High temperature + ozone||Silver birch (Betula pendula)||
|High temperature + pathogen||Arabidopsis||
|High temperature + UV-C||Strawberry||
|High temperature + high light||Sunflower
|High temperature + CO2||Soybean and maize||
|Low temperature + pathogen||Plants||
|Low temperature + high light||Dunaliella salina||
|Pathogen + nutrient||Arabidopsis||
|UV-B + Heavy metals||Pea||
|Nutrient + high CO2||Panicum maximum Jacq. ‘Mombaça’ (Guinea grass)||
|Heavy metals + heavy metals||Tomato||
|Positive response||Drought + ozone||Birch||
|beech trees (Fagus sylvatica)||
|Drought + high CO2||Plants||
|salinity + High temperature||tomato||
|Salinity + hypoxia||Salix||
|Salinity + high CO2||lettuce||
|Salinity + boron||Zea mays||
|Ozone + pathogen||Plants||
|Ozone + UV||Escherichia coli||
|Ozone + high CO2||Rice||
|Pathogen + UV||Various plants||
|High CO2 + high light||lettuce||
2.1. Physiological, Growth and Developmental Processes
Plants induce various interacting signal transduction pathways when exposed to different stress combinations . In general, combined or sequential stress evoke distinct responses in plants than individual stresses in physiological, molecular and metabolic networks, which influence nutrient assimilation and distribution , yet share common pathways and responses. Studies applying combined stress scenarios to mimic field conditions are increasing . These studies strongly focus on comparative transcriptomics of abiotic and biotic interactions. The integration of various metabolic pathways and the crosstalk between different sensors and signal transduction pathways further augments combined stress response . Current studies on the transcriptome analysis of combined stress response mainly represent a snapshot of a single time point. The sequential stress exposures induce priming , which allows plant to respond rapidly in future environmental vagaries . Combined stress results in oxidative stresses, which modulate sugar levels, plant growth and stress responses . This has allowed the characterization of genes specific to individual, combined or sequential stress conditions .
As recent research has indicated, temperatures higher than 35 °C affect germination, vegetative, reproductive, grain filling stages and ultimately yields . However, the reproductive stage is more sensitive to combined drought and heat stress, whilst each stress differentially affects reproductive traits . Earlier reports demonstrated that combined drought and heat stress shows similar tolerance mechanism to individual stresses, including the accumulation of compatible solutes, protective proteins, activation of non-enzymatic and enzymatic antioxidant system . Similarly, alterations in physiological processes, including photosynthesis, lipid accumulation, oxidative metabolism, and transcript abundance was observed , affecting membrane stability, stomatal conductance, reduced leaf area and water-use efficiency .
Under field conditions, heat and drought stresses occur simultaneously resulting in strikingly varied responses that cannot be inferred from their individual responses , which is also species specific . High temperature causes stomatal opening to increase transpiration and leaf surface cooling, long, slender leaves with a higher specific leaf area and decreased root development . In contrast, drought reduces leaf stomatal conductance and leaf area, resulting in enhanced canopy temperature by 2–5°C, while improved root development to prevent water loss and ABA accumulation . Whereas, stomata remain closed during combined drought and heat stress, leading to reduced membrane stability, relative water content, plant length, shoot fresh/ dry weight, stem diameter, leaf area, kernels/ear, 100-kernel weight, harvest index, seed abortion and reduced yield in potato, wheat and maize . In addition, enhanced respiration rate due to breakdown of reserved assimilate provides energy for acclimation under combined drought and heat stress to mitigate CO2 assimilation loss . Therefore, under natural field conditions, co-occurrence of heat and drought stress requires different strategies for acclimation .
Global climate change involvesincreased flooding events, which is detrimental to plant growth and productivity in agricultural ecosystems . Different parameters, such as leaf area, shoot dry weight, photosynthesis, transpiration, absorption and transport of nutrients, panicle number, panicle weight, harvest index drastically reduce under turbid floodwater . To confer enhanced adaptation and survival during energy starvation, plants develop mechanisms to survive during transient influx of water, which include energy generation through fermentation under hypoxia, adventitious roots/aerenchyma development for aeration, petiole and internode elongation to outgrow submergence, reduction in epidermal cell wall and cuticle thickness for reduced diffusion resistance . In addition, gas films on the leaf surface hamper the salt entry into leaves . Further, after desubmergence plants were abruptly exposed to higher oxygen and light intensity causing oxidative damage to photosystem II reaction centers and desiccation of leaves due to reduced hydraulic conductivity in shoots and mineral leaching . Coastal flooding causes combined salinity and submergence, causing oxygen deprivation and restricted energy production for ion transport resulting in accumulation of Na+ and Cl- and reduces K+ concentration. Halophytes inhabiting coastal regions preserve more pigment, chloroplast structure , develop aerenchyma and maintain antioxidant systems and activate the hormonal and signaling pathways .
2.2. Photosynthesis and Respiration
Photosynthesis, i.e., photo-assimilate production and carbon assimilation are the most sensitive physiological processes to adverse environmental conditions . Improved integrity of the photosynthetic apparatus often holds the key for stress tolerant genotypes. Photosystem II electron transport is the most sensitive segment of the photosynthetic machinery  and its structural and functional ability gets disrupted under adverse environments . Drought stress regulates photosynthesis through stomatal closure and reduced CO2 uptake and diffusion into mesophyll tissues, favoring oxygenase activity (Figure 2) , decline in ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) and ribulose bisphosphate (RuBP) activity , impairment of ATP synthesis, and photo-phosphorylation resulting in decline in crop biomass and yield . Similarly, at temperatures higher than 35 °C, photosynthesis becomes considerably reduced . At higher temperatures, oxygen solubility and Rubisco activity is reduced, causing higher photorespiration and lower photosynthesis . In addition, high temperature enhances thylakoid membrane fluidity, leading to dislodging of PSII light harvesting complexes from thylakoid membrane, indicated by steep rise in basal level of chlorophyll fluorescence . Similarly, cold and salt stress individually render adverse effects on photosynthetic electron transport chain by impairing performance of photosynthetic rate and photochemical efficiency in crops such as sunflower, bean and maize . However, limited information related to the effects of combined salt and cold on photosynthesis is available . Similarly, salinity and drought also negatively affect photosynthesis by limiting internal CO2 through stomatal closure .
Figure 2. Schematic representation showing the effects of combined stress on plants. Effect of combined stresses on plants is explained taking an example of heat and drought. For example, simultaneous exposure to heat and drought leads to enhanced retardation of physiological processes such as photosynthesis.
Mitochondrial respiration plays a pivotal role in determining the growth and survival of plants and is reduced under drought and temperature stress . However, under field conditions, high temperature stress is associated with soil temperature and drought. Increased respiratory losses by grains or kernels under heat stress can offset the increased influx of assimilation resulting in higher yield losses . Both stresses (heat and drought) increases membrane fluidity, leakiness and reduces integrity of the proteins and membranes. This leads to a decline in photosynthesis before respiration losses and enhanced photorespiration. Therefore, both drought and heat stress combination may, thus, be additive or multiplicative and exacerbates each other effects . Combined drought and heat stress influences diurnal, as well as seasonal patterns of leaf water potential, carbohydrate content, photo-assimilate translocation and stomatal conductance associated with senescence . The response pattern of crops under heat and drought stress during various growth stages can be the basis for selecting multiple stress tolerant variety to solve yield stability and nutritional crisis . Similarly, flooding stress reduces hydraulic conductance of roots , caused either by oxygen deprivation or accumulation of CO2 around the roots . This involves signal transduction from the hypoxic/ anoxic root system to the shoot, and subsequently its perception and conversion into physiological responses, such as drastically reducing energy production through eliminated/ reduced mitochondrial respiration. The energy requirements for survival are produced through fermentation pathways, primarily ethanolic fermentation .
2.3. Reactive Oxygen Species (ROS) Homeostasis
During suboptimal environmental conditions, different pathways are affected differently, which disrupts cellular homeostasis accompanied by the production of reactive oxygen intermediates (ROIs) due to increased electron flow from disrupted pathways to oxygen reduction . Different studies demonstrated that combined and sequential stresses trigger various ion channels leading to hormonal changes, which in turn, generated unique set of reactive oxygen species (ROS), i.e., O2− and H2O2 that causes cellular damages termed as ‘oxidative stress’ (Figure 3) . ROS are produced in almost every cellular organelle, primarily having high oxidized metabolic activity (chloroplasts) or high electron flow rates, during numerous enzymatic reactions and are important signaling molecules within the cell and cellular communication in between different cells . Cellular ROS levels are regulated by antioxidant molecules, i.e., carotenoids, tocopherols, alkaloids, phenolic compounds, flavonols, GSH, ascorbate and enzymes i.e., AOX, CAT, APX, SOD, GPX, glutathione reductase, glutathione-S-transferase and peroxidases that keep ROS levels in balance and protects against redox-regulated defense . It was shown earlier that cytosolic APX1(apx1) or ABA function deficient mutants and ROS-regulated protein PP2Cs (abi-1) are sensitive to combined heat and drought stress response .
Figure 3. Reactive oxygen species (ROS) signature during abiotic stress combination. (A) Abiotic stress is shown to result in the formation of a ROS signature that mediates plant acclimation or cell death. (B) A combination of two different stresses (heat and drought stress) is shown to generate a ROS signature that is unique to the stress combination and is the result of combining three different ROS signature (ROS signature for heat stress, ROS signature for drought stress and ROS signature generated from the combination of heat + drought stress).
Previous research has revealed a regulatory network of submergence-induced signal transduction through hormonal regulators, ROS, and ethylene regulating metabolic responses besides morphological adaptations for survival . Post-submergence stress is caused by sudden reoxygenation after prolonged hypoxia/ anoxia and re-illumination, after acclimation to low light under water. This causes electron leakage in membranes and electron-transport chains leading to inactivation of photosystem reaction centers and burst of ROS production . Less ROS-accumulating genotypes display better recovery after de-submergence . The production of ROS singlet oxygen (1O2) under excessive light inhibits D1 protein synthesis and hampers the repair of photodamaged PSII, dampened carbohydrate replenishment and senescence. Similarly, under heat stress, electrons from NADH produced by the soluble, membrane-bound complexes at the inner mitochondrial membrane are disrupted or uncoupled . During stress acclimation, plants undergo metabolite changes that involve reactive oxygen intermediates (ROI) production and defense regulated genes during stress, such as ROI scavenging enzymes and heat shock proteins . Various studies have demonstrated that plants display higher ROS burst and antioxidant enzyme activity under individual and combined cold and salt stress  or drought and salinity , such as rice , Azolla , wheat , and barrel clover . Previous studies have also shown dehydration and submergence tolerance through ROS detoxification regulatory enzyme and their transcriptional regulation in tobacco, rice, and Arabidopsis .
2.4. Multi-Omics Approach: New Potential Key Mechanisms
Significant developments have been made in plant genomics, particularly contributing to the development of stress tolerant crops. Transcript profiling under individual and combined stresses showed significant differences in plants , indicating differential regulation of combined and sequential stresses under individual and combined stresses . Yet, little is known about the overlapping stress combinations and their genetic interplay of unique-differentially expressed genes (DEGs) during plant acclimations the well-documented phenomena of “cross tolerance” . Therefore, the major challenge is to develop multiple stress tolerant cultivars with lack of information on physiological and molecular mechanisms. The complex signaling pathways associated with stress sensing and activation of defense and acclimation pathways involve mitogen-activated protein kinase cascades, calcium-regulated proteins, ROI, and cross talk among various transcription factors . Interestingly, different stress conditions can trigger similar stress response pathways . Various studies have been conducted to delineate the cellular metabolism of crop species, but despite recent advancements in genomics, metabolic adaptations under multiple stresses remain poorly characterized and require a systematic understanding ofhighthroughput “omics” combined within silico metabolic modeling .
Despite the continuous generation of transcriptomic data from various studies, our understanding of plant responses against combined or sequential stress is incomplete. Comparative transcriptomic studies have revealed molecular cross talks due to differential accumulation of both “unique genes” or “shared genes” during individual or combined or sequential stress (Figure 4) . Shared genes between individual and combined stress have mostly demonstrated the differential expression of transcription factor (TF)-encoding genes, polyamine and primary carbon metabolism related genes and phytohormone pathway-related genes . Comparative transcriptomics in Arabidopsis plants treated with six abiotic stresses (osmotic, oxidative, salinity, drought, heat and cold) and one biotic stress (Botrytis cinerea) revealed upregulation of 3 genes and downregulation of 12 genes under individual stresses and 13 genes commonly upregulated under heat/salinity/osmotic stress/B. cinerea stress, while 29 genes were commonly down-regulated . Previous workers have demonstrated that members of MAPK family were differentially regulated during various abiotic and biotic stresses and differentially regulate their downstream gene expression and signaling responses . MAPK pathways also show cross talk with ABA signaling pathways, ROS and ethylene . In previous studies, the altered expression of various micro-RNAs and their gene regulation in transgenic plants have been observed during various stress experiments . In addition, Ca2+ ions also play a key role during abiotic stress signaling, where they enter the cell through Ca2+-permeable channels to regulate specific downstream responses, such as protein interactions and stress-responsive gene expression .
Figure 4. Unique characteristics of multi-omics studies under heat, drought and combined heat + drought stress. Venn diagram showing the overlap between (A) transcripts, (B) proteins, (C) metabolites (up-regulated or down-regulated) during heat or drought stress, or a combination of heat and drought stress. The total number of transcripts or metabolites is indicated in parenthesis. The stress-induced expression was based on a significant linear regression (p < 0.01) and a threshold of ≥1.5-fold (log2) over control .
Previous studies on heat and drought stress revealed altered physiological changes that are reflected in their gene expression patterns subjected to combined stress . In wheat, large overlaps were reported in commonly up-regulated or down-regulated genes during individual and combined stress . Similarly, in other plants, the unique transcript profile was observed in response to combined heat and drought stress acclimation . Further, rapid changes in various transcription factor families (DREB, NAC, MYB, bZIP) was observed, which further activated downstream stress response pathways and were coordinated through synergistic or antagonistic interactions of metabolic and hormonal pathways under different abiotic stresses .
To improve the productivity of rice in coastal areas, genotypes tolerant to both water stagnation and salinity stress together can improve breeding efficiency . It was reported earlier that submergence tolerance gene SUB1A imparts tolerance only under the vegetative stage, neither in germination nor at the reproductive phases . A polygenic locus encoding two APETALA2/ Ethylene Response Factor (AP2/ERF) DNA binding proteins, SNORKEL1 and SNORKEL 2 (SK1 and SK2) provides an escape response by downregulating brassinosteroid synthesis and promoting gibberellic acid regulated internode elongation in deep-water rice . In contrast, submergence1A-1 (Sub1A-1) restricts shoot elongation for adaptation and induces alcohol dehydrogenase genes for carbohydrate production . A traditional rice cultivar “Baliadhan,” with SUB1 QTL is flooding tolerant during reproductive stage more than Swarna and Swarna-Sub1 . However, cultivar FR13A (Dhalaputia) tolerates flooding even more easily because of long stature  and retaining airy zones (gas films) around their leaves for longer durations . These gas films help in maintaining the carbohydrate status and internal aeration in rice during submergence. In contrast, FR13A is susceptible to salinity, but showed similar response during submergence and salinity in coastal areas . It shows that submergence tolerance is independent of submergence inducible genes SUB1B and SUB1C, located at SUB1 locus in rice . SUB1A was also reported to delay chlorophyll and carbohydrate breakdown in aerial tissue under prolonged darkness  and the loss of function mutants (prt6-1 and ged1) showed starch accumulation in leaves during submergence, providing enhanced survival .
During sequential submergence and post-submergence stress, ethylene is produced rapidly and accumulates in the cell membrane. Here, it binds with ethylene receptors and stabilizes ETHYLENE-INSENSITIVE3-LIKE1 (EIL1) and ETHYLENE-INSENSITIVE3 (EIN3) transcription factors and regulates downstream genes leading to a sequential stress response, including leaf hyponasty, shoot elongation, and adventitious root formation . SUB1A, avoids unnecessary energy consumption due to gibberellin (GA)-mediated elongation of submerged tissues . SUB1A also increases brassinosteroids (BR) production, which enhances SLENDER RICE1 (SLR1, a DELLA protein) accumulation and further bioactive GA degradation . OsETOL1 was found to negatively regulate ACC and ethylene production under drought and inhibits carbohydrate transportation to the developing seeds from leaves, leading to reduced grain filling and spikelet fertility. In contrast, OsETOL1 promotes carbohydrate consumption and energy production during submergence causing leaf elongation . Similarly, sucrose-nonfermenting1-related protein kinase1A (SnRK1A), an ortholog of mammalian adenosine monophosphate-activated protein kinase (AMPK) and yeast sucrose nonfermenting1 (SNF1) is reported as a carbohydrate starvation/energy depletion sensor during submergence. Further, trehalose-6-phosphate (T6P) inhibits SnRK1 activity and conversion of T6p into trehalose-6-phosphate phosphatase (TPP7, located at submergence tolerance QTL, qAG-9-2), increases sink strength in coleoptiles and germinating embryos, thereby, improving starch mobilization and seed germination under submergence .
SUB1A was also reported to act as convergence point during sequential drought after de-submergence in rice through detoxification of ROS, and stress-inducible gene expression and prevents reduction of hydraulic conductivity in leaves after de-submergence . Microarray and qPCR studies have shown that ethylene biosynthesis and signaling genes gets suppressed under drought stress and overexpression of homeobox (HB) genes regulated by different clades of HD-Zip type transcription factor, enhanced tolerance against various abiotic stresses . Numerous transcription factors were identified having functional roles in transcriptional regulation under drought stress such as DREB/CBF, ABRE, AREB/ABF, NAC and ERF . SUB1A induces accumulation of these transcription factors along with SLR1 and SLRL1 in ABA-dependent or ABA-independent manner for providing dehydration tolerance .
Salinity and drought alters the ionic and osmotic signal pathways respectively in different crops. Various QTLs and transcription factors have been characterized for salt stress (osmotic and ionic) tolerance during different developmental stages such as NAC , PDH45 , Saltol , Hardy , HKT , NHX  in rice and SOS  in Brassica. SOS signaling pathway is mostly explored during osmotic stress signaling , since identification of first two-component phosphorelay system (TCS) osmosensor in plant AHK1 . Heterologous expression of various genes in rice showed better ROS detoxification mechanism and reduce membrane damage during salinity and drought stress such as OsMT , OsCPK9 , MDCP , CrRLKs  and TPSP . Similarly, Open Stomata1 (OST1), a member of SNF1-related protein kinases2 (SnRK2) protein kinase family is a central regulator of cold signaling pathway  besides ABA dependent stomatal closure during osmotic stress . OST1 phosphorylates BTF3 (Basic Transcription Factor3) and ICE1 (Inducer of CBF expression1) transcription factors, leading to the expression of COR (Cold-Regulated) genes . Similar studies have demonstrated that unsaturated triacylglycerols accumulation through Phospholipid: Diacylglycerol Acyltransferase1 (PDAT1) increases membrane fluidity during high temperature .
Abiotic stress has profound impacts on plant proteomes, which include alterations in their localization, post-transcriptional and post-translational modifications, molecular cross-talks and biochemical interactions. Therefore, proteins shape novel phenotype and altered biological traits under environmental vagaries, which include transcriptional regulation of osmotins, dehydrins, LEA, and NAC transcription factors . Various functions of proteins have been reported under individual stress while their response under combined stress is still very less. Different reports have confirmed upregulation of enzyme pathways leading to enhanced accumulation of osmoprotectants under salinity and drought stress . The signaling pathways related to differentially expressed proteins during individual and combined stress responses were reported to be different from each other. Of these, some exclusively responded during individual and combined stress, while few showed similar function during individual and combined stress, such as protein kinases, phosphatases, LEA, dehydrins, osmotins, and HSPs . Osmotic (drought and salinity) stress sensory proteins are mostly localized in the plasma membrane and demonstrate similar response individually but differ during combined stress . Similar reports were observed during proteomics and western blot analysis in response to combined drought and heat stresses as glycolate oxidases, catalases and dehydrins were up-regulated during drought, while thioredoxin peroxidase is up-regulated during heat stress. However, during combined stress, ascorbate peroxidases were specifically down-regulated, while HSPs, alternative oxidase, glutathione peroxidase, cyclophilin, WRKY, phenylalanine ammonia lyase, and ethylene-responsive element-binding protein were upregulated .
Climate change has exacerbated the unpredictability and severity of environmental vagaries that are sub-optimal for plant growth and survival. Plant resilience to environmental extremes continuously adjust plant metabolism to regulate growth and development within a highly dynamic, and often, inhospitable environment, as well as after the removal of stress. Numerous inter-connected signaling pathways that regulate metabolic networks revealed differential regulation of physiological and biochemical production of secondary metabolites during abiotic stresses, as well as contribute markedly to antioxidant defense response . Unfortunately, previous studies on plant metabolites have been focused on individual stresses , which were later found to differ during combined and sequential stress response . However, few studies on individual and combined abiotic stress reported some uniquely accumulated metabolites during individual stress such as proline, while few compounds accumulated under combined stress, such as sucrose, maltose, and glucose . Therefore, metabolic plasticity may activate appropriate defense responses to cope with multiple environmental stresses . The metabolite profiling of samples during individual and combined abiotic stresses led to the identification of metabolic markers which were closely related .
It was hypothesized that secondary metabolite accumulation and related gene expression during drought and salt stress may stimulate osmotic adjustment . Different stress-inducible metabolic networks and signal transduction pathways are triggered during early and later stages of stress to achieve global metabolic homeostasis . This reveals greater crosstalk between the metabolic pathways of individual or combined abiotic stresses during different developmental stages .
The entry is from 10.3390/ijms22116119
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